Dear all,
Regarding my last posting titled "Starting with realigned/registered images," it appears that the issue was one of missing masks, which I accounted for using the following lines:


process_fmri
% Setup grey/white/CSF masks:
BATCH.Setup.masks.Grey.files{1} = GreyMask;
BATCH.Setup.masks.White.files{1} = WhiteMask;
BATCH.Setup.masks.CSF.files{1} = CSFMask;

My question now is, if I already have the subject's Atlased image, is there a way to use the altased file directly and skip the steps of the mask files?

With thanks,

farras