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help > RE: Custom voxel-level analysis mask
Jul 24, 2012 05:07 AM | Alfonso Nieto-Castanon - Boston University
RE: Custom voxel-level analysis mask
Hello Dan,
Regarding using an external explicit mask, I added that option to the latest release (13l). Using batch scripts you can now set the explicit mask using the batch.Setup.voxelmaskfile field (see the batch manual documentation for additional info)
And regarding the display background images in the GUI, you can also change those by right-clicking on any of the brain displays in the 'second-level results' tab and selecting 'change background anatomical image' (once you change this in one display the same modification will apply to all of the GUI displays as well), or from the command line typing 'conn background_image filename.img' (where filename.img is the desired reference volume filename).
Hope this helps
Alfonso
Originally posted by Dan Mitchell:
Regarding using an external explicit mask, I added that option to the latest release (13l). Using batch scripts you can now set the explicit mask using the batch.Setup.voxelmaskfile field (see the batch manual documentation for additional info)
And regarding the display background images in the GUI, you can also change those by right-clicking on any of the brain displays in the 'second-level results' tab and selecting 'change background anatomical image' (once you change this in one display the same modification will apply to all of the GUI displays as well), or from the command line typing 'conn background_image filename.img' (where filename.img is the desired reference volume filename).
Hope this helps
Alfonso
Originally posted by Dan Mitchell:
Hello,
I would like to use an explicit rather than an implicit analysis mask, but I can't use the default template mask because my data are from macaque. Is it possible to use a custom voxel-level analysis mask? (I'd like to be able to specify this in batch mode.)
Relatedly, is it possible to display a custom volume in the second-level results preview?
Thanks in advance,
Dan
I would like to use an explicit rather than an implicit analysis mask, but I can't use the default template mask because my data are from macaque. Is it possible to use a custom voxel-level analysis mask? (I'd like to be able to specify this in batch mode.)
Relatedly, is it possible to display a custom volume in the second-level results preview?
Thanks in advance,
Dan
Threaded View
| Title | Author | Date |
|---|---|---|
| Dan Mitchell | Jul 23, 2012 | |
| Alfonso Nieto-Castanon | Jul 24, 2012 | |