Hi Mac

No problem, something along these lines should work:

nsubjects=175;
SubjectFolder=arrayfun(@(x)['/data/patients/x',num2str(x,'%03d')],1:nsubjects,'uni',0);
SessionSubFolder={'functional'};
StructuralFolder='structural';
for nsub=1:numel(SubjectFolder)
    for nses=1:numel(SessionSubFolder)
        files=conn_dir(fullfile(SubjectFolder{nsub},SessionSubFolder{nses},'vol*.img'));
        batch.New.functionals{nsub}{nses}=files;
        fprintf('Subject %d, Session %d: %d functional files in %s\n',nsub,nses,size(files,1),fullfile(SubjectFolder{nsub},SessionSubFolder{nses}));
    end
    files=conn_dir(fullfile(SubjectFolder{nsub},StructuralFolder,'anat*.img'));
    if size(files,1)~=1, error('no anatomical file found'); end
    batch.New.structurals{nsub}=files;
end
(please change the reference to 'anat*.img' to something appropriate for the filename of your structural volumes)
Hope this helps

Best
Alfonso


Originally posted by Mac Shine: