help > RE: loading 4D data
Jan 28, 2013  10:01 PM | Hanchuan Peng
RE: loading 4D data
First, it is unclear what you meant by "4D". There are several cases.

(1) If the 4D means X,Y,Z,C where C is color channel, then you can simply visualize in a 3D view window. However, when C is greater than 3, you will need a blending function. In Vaa3D theer are several ways to do that, e.g. the atlas manager.

(2) If 4D means X,Y,Z, and T, where T is time, then you can use the 3D viewer to see it, the time scrollbar will appear at the bottom of a 3D viewer.

(3) If 4D means X,Y, C and T, then similar to (2), you can use the time scroll bar to see the data.

Second, if your files have the sequence like xxx_01.tif, xxx_02.tif, ... instead of using the 5D stack converter, you can import the sequence using Main Menu -> File -> Import -> Impotrnt general Image Series (the first menu item i=there). Then if your data is temporal data , then select the bottom option in the pop-up dialog to be "Pack in Channel". Then when you produce the 3D viewer, you can see the temporal scroll bar, while you are visualizing data in 3D.

-Hanchuan



Originally posted by Crystal Davey:
Hi,
I am having trouble viewing 4D single channel images. I have tried both "packing files in channel dimension" and using the 5D stack converter. My file naming convention is xxxx_z01t01.tif, xxxx_z01t02.tif, etc. In the user guide xxxx_001.tif, xxx_002.tif is suggested. But how do you distinguish z versus t? Does the 1 and 2 in the example correspond to t or z?
Thanks,
Crystal

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TitleAuthorDate
Crystal Davey Jan 28, 2013
RE: loading 4D data
Hanchuan Peng Jan 28, 2013
Crystal Davey Jan 28, 2013
Hanchuan Peng Jan 28, 2013
raju bhai Jul 19, 2016
Hanchuan Peng Jul 19, 2016
raju bhai Jul 25, 2016
Alessandro Bria Jul 25, 2016
Hanchuan Peng Jul 25, 2016