open-discussion
open-discussion > INIA19 template label maps in MRIcron?
Dec 19, 2013 07:12 PM | Torsten Rohlfing
INIA19 template label maps in MRIcron?
I agree that it would be nice to have the INIA19 template properly
integrated in MRIcron. Unfortunately, no none here is really using
MRIcron, so it's not really supported.
The .txt file you found is intended to work with 3D Slicer (www.slicer.org), not MRIcron, so it is not terribly surprising that it is apparently not in the correct format.
What does confuse me, though, is why MRIcron would look up xyz coordinates in the .txt file. My instinct would be to look up the label for a given location in the NIFTI, then look up that label in the .txt file to get the corresponding name.
Best,
Torsten
The .txt file you found is intended to work with 3D Slicer (www.slicer.org), not MRIcron, so it is not terribly surprising that it is apparently not in the correct format.
What does confuse me, though, is why MRIcron would look up xyz coordinates in the .txt file. My instinct would be to look up the label for a given location in the NIFTI, then look up that label in the .txt file to get the corresponding name.
Best,
Torsten
After reading your 2012 paper on a non-human primate brain
template, I wanted to use the
template
in MRIcron. Placing the template files into the templates folder for
MRIcron, the templates are available for use. Unfortunately though,
MRIcron cannot find the names of the brain areas (listed in
inia19-NeuroMaps.txt) based on the xyz-coordinates.
I was
wondering if this should be possible with your template. I would think
so, judging by the contents of inia19-NeuroMaps.txt. Do I need to
perform an additional step to register the template data to the names of
the brain areas listed in the text file?
in MRIcron. Placing the template files into the templates folder for
MRIcron, the templates are available for use. Unfortunately though,
MRIcron cannot find the names of the brain areas (listed in
inia19-NeuroMaps.txt) based on the xyz-coordinates.
I was
wondering if this should be possible with your template. I would think
so, judging by the contents of inia19-NeuroMaps.txt. Do I need to
perform an additional step to register the template data to the names of
the brain areas listed in the text file?
Threaded View
| Title | Author | Date |
|---|---|---|
| Torsten Rohlfing | Dec 19, 2013 | |
| Li-Ann Leow | Feb 9, 2014 | |
| Torsten Rohlfing | Mar 12, 2014 | |
| Dirk Schuit | Dec 19, 2013 | |
| Torsten Rohlfing | Dec 19, 2013 | |
| Dirk Schuit | Dec 20, 2013 | |
| Torsten Rohlfing | Dec 20, 2013 | |
| Dirk Schuit | Dec 20, 2013 | |
| Torsten Rohlfing | Dec 22, 2013 | |