processing-scripts > questions about NUISANCE SIGNAL REGRESSION
May 14, 2014  04:05 AM | peter lee
questions about NUISANCE SIGNAL REGRESSION
Hi guys,
when I use the batch_process.sh from fcon_1000,
I have a question about NUISANCE SIGNAL REGRESSION, there are some errors occurred.
I am a very beginner, looking forward to your help.
thank you so much.




--------------------------------------------
!!!! RUNNING NUISANCE SIGNAL REGRESSION !!!!
--------------------------------------------
Splitting up sub19738 motion parameters
Extracting global signal for sub19738
++ 3dmaskave: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
+++ 61534 voxels survive the mask
Extracting signal from csf for sub19738
++ 3dmaskave: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
+++ 160 voxels survive the mask
Extracting signal from white matter for sub19738
++ 3dmaskave: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
+++ 2628 voxels survive the mask
Modifying model file
Running feat model
Running film to get residuals
-r: Option doesn't exist!
try: film_gls --help
++ 3dTstat: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
++ Authored by: KR Hammett & RW Cox
** FATAL ERROR: Can't open dataset /home/peter/fcon_1000/Baltimore/sub19738/func/nuisance/stats/res4d.nii.gz
** Program compile date = Apr 24 2014
++ 3dcalc: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can't open dataset /home/peter/fcon_1000/Baltimore/sub19738/func/nuisance/stats/res4d.nii.gz
** Program compile date = Apr 24 2014
Image Exception : #22 :: ERROR: Could not open image /home/peter/fcon_1000/Baltimore/sub19738/func/rest_res
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/home/peter/fcon_1000/scripts/5_nuisance.sh: line 95:  5030 Aborted                 (core dumped) flirt -ref ${reg_dir}/standard -in ${func_dir}/${rest}_res -out ${func_dir}/${rest}_res2standard -applyxfm -init ${reg_dir}/example_func2standard.mat -interp trilinear

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TitleAuthorDate
questions about NUISANCE SIGNAL REGRESSION
peter lee May 14, 2014
Maarten Mennes May 14, 2014
peter lee May 15, 2014
Maarten Mennes May 15, 2014
peter lee May 15, 2014