processing-scripts
processing-scripts > questions about NUISANCE SIGNAL REGRESSION
May 14, 2014 04:05 AM | peter lee
questions about NUISANCE SIGNAL REGRESSION
Hi guys,
when I use the batch_process.sh from fcon_1000,
I have a question about NUISANCE SIGNAL REGRESSION, there are some errors occurred.
I am a very beginner, looking forward to your help.
thank you so much.
--------------------------------------------
!!!! RUNNING NUISANCE SIGNAL REGRESSION !!!!
--------------------------------------------
Splitting up sub19738 motion parameters
Extracting global signal for sub19738
++ 3dmaskave: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
+++ 61534 voxels survive the mask
Extracting signal from csf for sub19738
++ 3dmaskave: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
+++ 160 voxels survive the mask
Extracting signal from white matter for sub19738
++ 3dmaskave: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
+++ 2628 voxels survive the mask
Modifying model file
Running feat model
Running film to get residuals
-r: Option doesn't exist!
try: film_gls --help
++ 3dTstat: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
++ Authored by: KR Hammett & RW Cox
** FATAL ERROR: Can't open dataset /home/peter/fcon_1000/Baltimore/sub19738/func/nuisance/stats/res4d.nii.gz
** Program compile date = Apr 24 2014
++ 3dcalc: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can't open dataset /home/peter/fcon_1000/Baltimore/sub19738/func/nuisance/stats/res4d.nii.gz
** Program compile date = Apr 24 2014
Image Exception : #22 :: ERROR: Could not open image /home/peter/fcon_1000/Baltimore/sub19738/func/rest_res
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/home/peter/fcon_1000/scripts/5_nuisance.sh: line 95: 5030 Aborted (core dumped) flirt -ref ${reg_dir}/standard -in ${func_dir}/${rest}_res -out ${func_dir}/${rest}_res2standard -applyxfm -init ${reg_dir}/example_func2standard.mat -interp trilinear
when I use the batch_process.sh from fcon_1000,
I have a question about NUISANCE SIGNAL REGRESSION, there are some errors occurred.
I am a very beginner, looking forward to your help.
thank you so much.
--------------------------------------------
!!!! RUNNING NUISANCE SIGNAL REGRESSION !!!!
--------------------------------------------
Splitting up sub19738 motion parameters
Extracting global signal for sub19738
++ 3dmaskave: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
+++ 61534 voxels survive the mask
Extracting signal from csf for sub19738
++ 3dmaskave: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
+++ 160 voxels survive the mask
Extracting signal from white matter for sub19738
++ 3dmaskave: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
+++ 2628 voxels survive the mask
Modifying model file
Running feat model
Running film to get residuals
-r: Option doesn't exist!
try: film_gls --help
++ 3dTstat: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
++ Authored by: KR Hammett & RW Cox
** FATAL ERROR: Can't open dataset /home/peter/fcon_1000/Baltimore/sub19738/func/nuisance/stats/res4d.nii.gz
** Program compile date = Apr 24 2014
++ 3dcalc: AFNI version=AFNI_2011_12_21_1014 (Apr 24 2014) [64-bit]
++ Authored by: A cast of thousands
** FATAL ERROR: can't open dataset /home/peter/fcon_1000/Baltimore/sub19738/func/nuisance/stats/res4d.nii.gz
** Program compile date = Apr 24 2014
Image Exception : #22 :: ERROR: Could not open image /home/peter/fcon_1000/Baltimore/sub19738/func/rest_res
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/home/peter/fcon_1000/scripts/5_nuisance.sh: line 95: 5030 Aborted (core dumped) flirt -ref ${reg_dir}/standard -in ${func_dir}/${rest}_res -out ${func_dir}/${rest}_res2standard -applyxfm -init ${reg_dir}/example_func2standard.mat -interp trilinear
Threaded View
| Title | Author | Date |
|---|---|---|
| peter lee | May 14, 2014 | |
| Maarten Mennes | May 14, 2014 | |
| peter lee | May 15, 2014 | |
| Maarten Mennes | May 15, 2014 | |
| peter lee | May 15, 2014 | |
