Hello Peter,

it turns out that the FSL-guys changed the options for film_gls. All options for that command are now -- instead of -.

You can adjust the line with film_gls in the 5_nuisance.sh script so all options have the --

Or alternatively replace that line by the line below

film_gls --rn ${nuisance_dir}/stats --noest --sa --ms 5 ${func_dir}/${rest}_pp.nii.gz ${nuisance_dir}/nuisance.mat ${minVal}

hope this helps,
Maarten