Brainstem Navigator
The Brainstem Navigator toolkit is a collection of in-vivo brainstem nuclei atlas labels, MRI templates and documentation. The atlas is in stereotactic space and includes gray matter brainstem regions involved in arousal/sleep, autonomic, motor, sensory and limbic function. The atlas labels of brainstem nuclei were created by semi-automatic and manual segmentations of multi-contrast MRI of living humans at 7 Tesla. This toolkit includes a tutorial of scripts with alignment routines of the brainstem nuclei atlas labels to structural, diffusion and functional MRI data of individual subjects. This package has been made available to enable researchers to identify the location of brainstem nuclei in both conventional and advanced MRI (e.g. 3 Tesla, 7 Tesla).
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Recent Activity - Forums
label descriptions posted by shortface on Jul 9
FSLeyes atlases posted by jtownsend on May 1
(resolved) Do you have atlas with MNI space? posted by Junghyun (Andy) Kim on Jan 3, 2023
Welcome to Open-Discussion posted by Marta Bianciardi on Jan 2, 2022
Welcome to Help posted by Marta Bianciardi on Jan 2, 2022
Recent Activity - News
Release of Brainstem Navigator v1.0 posted by Marta Bianciardi 19 hours ago
Release of Brainstem Navigator v0.9 posted by Marta Bianciardi on Jan 5, 2022
Recent Activity - Files
brainstemnavig: Brainstem Navigator v1.0 release
BrainstemNavigatorv1.0.zip posted by Marta Bianciardi 19 hours ago
brainstemnavig: Brainstem Navigator v0.9 release
BrainstemNavigator.zip posted by Marta Bianciardi on Jan 2, 2022