MONSTR Multi Contrast Brain Stripping
It is a patch-based method. Multiple atlas images are first registered to a subject. Then based on the similarities between multiple atlas patches and a given subject patch, the corresponding label (i.e. brain or non-brain) of the subject patch is estimated.
In addition to the software, we also provide 3 sets of atlas images, having 17 subjects in total. Each atlas contains T1, T2, (FLAIR for one set), and their manually delineated brainmasks.