S3DL Sparse Dictionary Learning based MR Image and Lesion Segmentation
There are two parts of the tool, one to create multi-class segmentation from T1-w MR images, another to segment MS lesions from T1-w and FLAIR images. They can be used independently. In addition to the software, some training atlases and test data are provided.
The toolbox is based on the following paper,
S. Roy, Q. He, E. Sweeney, A. Carass, D. S. Reich, J.L. Prince, and D. L. Pham, "Subject-Specific Sparse Dictionary Learning for Atlas-Based Brain MRI Segmentation", IEEE Journal of Biomedical and Health Informatics, 19(5):1598-1609, 2015.
can be extended by:
is from the makers of:
works well with: