My research is about aging, so what I need is healthy MRI of the elderly. I saw some data from CORR that didn't give some information about the researcher, for example

LMU 2 - Ludwig-Maximilians-University (Blautzik, Meindl) and 

LMU 2 - Ludwig-Maximilians-University (Blautzik, Meindl)

, I wonder if all the data given on CORR are healthy people. thank you

Dear Sir/Madam, kindly help me get ABIDE brain image mask data to identify the vulnerable region of interest. 

Dear All, 
I'm looking for a dataset of HS scanned at least twice at least 4 Year (mean) a part.
I just need brain 3DT1W images with a FOV that covers at least C2-C3 vertebral spine. 
I will check the ABIDE II dataset, bui I was wondering if there are other repository with these characteristics
Thank you very much for your help

Hello all, 

I am looking for a longitudinal dataset of healthy controls. I am not able to find them. Preferably, the dataset would already have been processed by FreeSurfer. Any idea of where to find them and how to download them? While the NITRC is very kind to provide this data to us, it is quite a convoluted to find processed FreeSurfer scans. 

Thanks for any reply or insight.

Hi
are the subjects in this cohort neurotypical? Especially children?

thanks
Bassam

I notice in NYU cocaine cohort, they said some of HC are included in NYU_a. But which part are included in NYU_a? Or are all subjects in NYU_a HCs and scanning in same MRI scanner, same parameters and same protocol to cocaine cohort?

I saw that in the ADHD-200 NeuroImage paper there should be behavioral/phenotype information from these partcipants on here...but I can't find them. Can someone point me in the right direction?

Best,
Michael

Hello I am looking for a autism MRI (sMRI and fMRI) dataset of early age below 3 years. and

Hi, recently I downloaded data of Beijing EOCO, and want to use it to do some analysis exercises.

but, i didn't find the information about whether the subjects is a non-right-handed or right-handed.

I am really appreciate if someone could provide these information!

looking forward to your warmhearted reply!

Hello everyone!

Is there anyone who has published articles based on abide dataset? If you have, please send me a copy. Thank you!

Hello 

I'm a PHD student,I need the ADHD-200 data to do my work. There are two problem. First, I can't  get the ADHA-200 data from the website 'http://fcon_1000.projects.nitrc.org/indi/adhd200/'. When I login the NITRC at the bottom right corner of website, the page displays a response and returns to the page. Hence, I attempt to download data from  the website 'https://www.nitrc.org/ir/app/template/XDATScreen_report_xnat_projectData.vm/search_element/xnat:projectData/search_field/xnat:projectData.ID/search_value/adhd_200' But the second question, when get data, I found the subject information include the Sex, Hand, MR Sessions, but there in no age information.   To do my research at the highest level of quality, I need the age information. It would be helpful if you could guide us to access this information.

Thanks

Hi

I tried to use ICBM dataset for my purpose，I found there are three rest files for each subject. How should I use that set or does rest-1-2-3 has any difference from each other?



Thanks

Hello,

I am trying to locate the COBRE Schizophrenia dataset. Can someone please point me to the download site. I am registered with fcon and NITRC.

thank you
Jim

Hello,
I am a student from Mondragon university and I need functional and diffusion connectivity matrices for a practical work. Where can I find this?
Thanks

Hi all,

I've downloaded some images of the ABIDE I (preprocessed by DPARSF) dataset but I am having difficulties in the analysis. 
Basing on my research's aim I would like to use dynamic casual modelling with SPM to confirm (or not) my hypothesis.
Although it seems that it is not possible with preprocessed data I've dowbloaded from this site, then I would like to know if there is a way to obtain not processed images or DICOMs or some alternatives to my problems (e.g. .mat file with processing output, motion correction file, alternative methods, etc...)
From some researches or questions in this forum it seems that there is a way to obtain raw data (correct me if I am wrong), is there a particular site or method to obtain some useful file or data for my aim.

Thanks for the attention,
Sincerely,

Roberto

I am trying to use the ABIDE data processed by C-PAC pipe line. I downloaded the ABIDE I Preprocessed data that has the dimension of <61×73×61×T> (T is the number of time points). I also downloaded the Harvard-Oxford (HO) atlas, which has a dimension of <65×77×63>. The voxel sizes for fMRI data and HO atlas are same (3mm*3mm*3mm).

How can I get the voxel time series by using fMRI data and non-overlapping atlas? Thank you.

I downloaded the ABIDE I Preprocessed data for calculating distance correlation between the voxel time series of a pair of ROIs. But I found the preprocessed data has non-overlapping volumes from the masker(atlas). For example, I found the dimension of the Preprocessed functional image is <61×73×61×T> (T is the number of time points). But the dimension of the ROI atlases such as Harvard-Oxford (HO) is <65×77×63>. Is there other Harvard-Oxford (HO) atlas has overlapping volumes with the preprocessed functional image? Thank you.

The data I downloaded is from the folllowing link of ABIDE
http://preprocessed-connectomes-project....
The Harvard-Oxford atlas downloaded is from the folllowing link of ABIDE
http://preprocessed-connectomes-project....
Best
Erick Zhou

I  have download the prepossessed ABIDE I data. I can import the time series data (*.1D) by matlab. But I try to use the command "load" to load the time series, it does not work. Details of using "load" to load the prepossessed ABIDE I data can be found as follows


load('G:/ABIDE1_File/Outputs/cpac/filt_global/rois_cc400/Caltech_0051456_rois_cc400.1D');
??? Error using ==> load
Unknown text on line number 1 of ASCII file G:/ABIDE1_File/Outputs/cpac/filt_global/rois_cc400/Caltech_0051456_rois_cc400.1D
"#1".

Would you please give me some suggestions? Thank you

I found a list of neuroimaging data sharing in translational neuroimaging. The link is as follows https://www.nature.com/articles/nn.4478/tables/1

Would you please tell me which dataset provide the fMRI time series. I know ABIDE I provides the fMRI time series. Are there any others providing the data of time series. Thank you.

Hello, 

I am currently working on the NewYork_a_part1 and part2. 
I would like to know if the acquisition parameters (TR, TE, etc...) and the scanner (3T?, siemens?) concerning the T1 and the BOLD could be found somewhere? a paper of reference?
Thank you very much!
Clément

Hi, I needed access to the abide database asap but it has not been approved yet. I requested this a while ago. Any help would be appreciated!

Hi NITRC, I've a question about how to relate old data set to updated data set.
I analyzed old data set years ago, referring to NKI.1-39.phenotypic.csv. Now I want to include more subjects. 

My question is:
The participant IDs in NKI.1-39.phenotypic.csv and participants.tsv look very different.
How can I determine the correspondence between the two files. I hope that I do not have to re-analyze the subjects that I've already analyzed before.

Or is there any cutoff in participants.tsv so that the participant ID larger than some number indicates new subjects and lower than that number indicates old subjects (registered in NKI.1-39.phenotypic.csv)?

Thanks for you help in advance, Jimmy ~

ABIDE UM_1 subjects 0050279 and 0050286 have the same data.  mprage.nii.gz and rest.nii.gz are each different between the subjects, but the unzipped data files are identical.

Christian

The Group of Psychiatric Neuroscience at the University of Bari Aldo Moro (Italy) aims to discover
the biological sources of differences between individuals that make them at risk of - or resilient to -
psychiatric disorders.
We will publish 3 calls for research fellowships in neuroimaging in different projects with
multiple PIs. One of the positions is reserved for magnetoencephalography (1 year renewable up to
4 years, funding already secured; official call here), the other two for fMRI (1 for 1 year renewable,
1 for 2 years renewable; official call pending). The positions are targeted at postdoctoral fellows.
Outstanding predoctoral candidates will be evaluated. The expected starting dates are between
March and July 2020.
Expressions of interest are welcome before December 31st.

The group is headed by Prof. Alessandro Bertolino and investigates the association of genetic
variability with brain phenotypes, with a special focus on subjects at risk for psychiatric
disorders (for recent articles from the lab, see [1], [2], [3]). Successful candidates will work in the
lab of Brain Imaging, Networks, and Data mining (BIND) directed by Dr. Giulio Pergola. The
department has an in-house Elekta Triux magnetoencephalography with a dedicated technician.
Two 3T MRI scanners are available in collaborating hospitals. Prof. Giuseppe Blasi and his team
have access to and routinely tests patients, relatives of patients, and individuals at risk for
psychosis. The environment is interdisciplinary, including psychologists, biotechnologists, and
MDs, and internationally oriented, e.g., including Marie Curie awardees Dr. Pergola and Dr.
Linda A. Antonucci, along with several other members trained for > 1 year in UK, USA, and
Finland.
The ideal applicant is a neuroimager with international experience and a PhD in Neuroscience,
Cognitive Sciences, Neuropsychology, Computational Science, or any quantitative research field.
Coding experience (Matlab, Python, or R) is required, whereas machine learning and graph
theory expertise are a plus. Successful candidates are expected to have at least one
published/submitted lead author paper. We expect the successful candidate to be motivated
and research-oriented. It is equally important to have a team-working attitude and a motivation to fit
in the group. Proficiency in Italian is not required.
Consider applying even if you only have strong coding and analytic skills – definitely apply if you
think you have smart ideas on how to analyze multimodal neuroimaging data from hundreds
of subjects.
The University of Bari Aldo Moro is one the largest Italian universities (50.000 students, 1500
permanent professors and researchers, 1500 units of technicians and administrative staff). Bari is a
sunny city located by the sea, and the third largest Italian city south of Rome. The cost of living is
low relative to Italian standards.
Please contact Dr. Giulio Pergola sending a CV and the contact details of at least two references
if you would like to have more information on the positions and on the ongoing projects
(giulio.pergola@uniba.it).

Hi all

I’m analyzing the ADHD-200 data. What is the gender assignment for the 0 or 1 encoding?

Thanks

Dave

I need to download ABIDE II dataset. I have created an account on NITRC.

From his link, I have requested access to ABIDE II dataset on 18/10/2019. I haven't got access to ABIDE II dataset until this day. can somebody help me to get the dataset?

Hi 1000 Functional Connectomes team,

I found some issues with the Healthy Brain Network MR data:

• Subject NDARUW904FMQ in Release 2.1: anat/sub-NDARUW904FMQ_acq-HCP_T1w.nii.gz is corrupt
• Subject NDARUP908XUJ in Release 4: fmap/sub-NDARUP908XUJ_acq-fMRI_run-01_epi.json is empty
• Subject NDARJF517HC8 in Release 5: anat/sub-NDARJF517HC8_acq-VNav_T1w.nii.gz is corrupt

Christian

In EEG protocol description, (resting state)

"Participants are instructed to open or close their eyes at various points."

Q1. What is the point of closing or opening the participant's eye?
      - We want to know when the participant's eyes are opened or closed.
      - What are the various points?

Q2. If you give instructions to participant in the resting state to open or close their eyes, can we get that point (instructed timing)? 

Thanks

Did the subjects in Baltimore data (available at http://fcon_1000.projects.nitrc.org/fcpC...) have ASD? Where can I get more information about the subjects and experimental design (e.g., block design etc.)?

Thanks in advance,
Mamun

My name is Kaio and I am a master's student in Brazil. My intention to study is about cerebral vasoreactivity in aging, as well as a processing methodology with resting state images.
How can I get the task block in the acquisition of Breath Holding? The "Vision Egg" software does not have any recent updates to compile the available routine.
I have already realized that there are 176 volumes in the acquisition (TR = 1400ms, Multiband). However I need the blocks of the task to do the other analyzes.

Thank you in advence for your support.

I read the paper 'MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites' and noticed the 'Please note that each vendor reported a different definition for TR and TE, thus their values are not directly comparable.' So, I want to resample the original ROI time series for processing. Any Idea?

Dear experts, 

I notice that only BMI information is available now in the ABIDE website. Since most of the subjects in ABIDE are children and adolescents, it might be better to use BMI z score (http://www.who.int/growthref/who2007_bmi...) in some analyses. Therefore can I apply for the weight and height information of the ABIDE subjects, which are necessary input to calculate the BMI z score.

Bests,

Lingli

Dear experts,

We used the T1-weighted anatomical scans generously provided as part of the 1000 Functional Connectomes Project data. 
Our paper has now returned from review, and we were requested by a reviewer to provide information regarding the image protocols used to obtain the anatomical scans in the different sites. I looked over the 1000 FCP resources and unfortunately could not find information about the acquisition of the anatomical scans.
Does anyone know where can I obtain these parameters? 
Any help would be much appreciated.

Thank you!
Zoi

I downloaded your share of schizophrenia patients and healthy control group fMRI image data in 1000FCP website,
thank you very generous to share, thank you!
Your data has been perfect, but I need more information,
such as education level, age at onset, length of illness, PANSS total, and Neuropsychological test data et al.
If you convenient, may I have it?
Help my master research papers completed, thanks!

Hello!
I need the phenotype complete file from ABIDE II, but when I click the link (ftp://www.nitrc.org/fcon_1000/htdocs/ind...) it keeps asking me to log in. I put my password but it doesn't accept. I believe maybe this file is not available now. Could anyone give me another link to this file? I have all data files from ABIDE II, but I need the phenotype file to use it.

Thanks a lot!

Dear Experts

Where could I locate both time points and slice number for raw rest fMRI in ABIDE data sets?

In addition, were DPARSF configuration files also available?

http://preprocessed-connectomes-project....


Thanks for considering my request.


Best wishes
Larry

I am working with a dataset from CoRR (UM - University of McGill (Bellec, Breitner); found here: http://fcon_1000.projects.nitrc.org/indi/CoRR/html/um_1.html

It says the scan parameters are pending for this dataset. Does anyone have access to this information?

Also, I haven't found information regarding the diagnostic status of these participants (i.e. healthy, MCI patients, etc). Has anyone found this information?

Thanks!
Corey

Hi, I want to download the ABIDE datasets to do some research on autism. But I have no permission. Besides, I also sent a request and there is no reply.
Can you help me?
Thank you very much.

Best wishes,
Zi-Rui

Hello: I am trying to download the adhd-200 dataset from this project, but when I click download images and direct download- my screen just says download images in the header with no files actually downloading. How can I download the dataset correctly?

Following the url for that file
http://www.nitrc.org/frs/downloadlink.ph...
leads to Error 550 : Failed to change  directory

Hi, thanks for sharing ABIDE data.

I download ABIDE data from loni, and want to link the subject ID back to site (scan location, e.g Caltech) to get the scan parameters, such like TR, TE, slice order, anyone can tell me how to link these data from LONI back to site, e.g. which site subject 50002 belongs to?

Thanks for  your help.

I am doing regressing analysis on the senior age ranges of this dataset.
The internetwork FC were generally decreased with ageing, with was not agree with the U shape of lifespanstrategy.
I checked the head motion parameters and found a significant linear relationship between head motion level with age.
I want to know, if this dataset has been affected by great level of head motion.
Thank you.

I am doing regressing analysis on the senior age ranges of this dataset.
The internetwork FC were generally decreased with ageing, with was not agree with the U shape of lifespanstrategy.
I checked the head motion parameters and found a significant linear relationship between head motion level with age.
I want to know, if this dataset has been affected by great level of head motion.
Thank you.

This is a duplicate post from my phone =/ looking how I can delete it. sorry for spam.

Hi all, I hope I have found the correct place to gather some information. Our company Bixal (I  will not link. I don't know the rules of this forum, but google search of 'bixal solutions' will lead you to a very real company based in fairfax, VA) has given a few of us developers some time to reach out and do a project for learning. In our research we came across the S3 datastore you all seem to use to aggregate data. 

One of the ideas we had was to help take some of this data, and create a web application to index, sort, and compare datasets based on metadata provided. From a developer point of view this has a few topics that we'd like to learn and are interesting for different members of the team.

My question/request is the following though, we're looking for a person(s) to help us understand how you are actually using this data. We are not subject matter experts and we have no clue if a tool like this would even be useful. If anyone was interested it could be as simple as a few emails or threads on a forum, or we could set up a short call as needed.

If this isn't the best place to find a contact like that, could anyone point us in the correct direction? We'd just like to make something helpful for someone, rather than a purely theoretical web application, that nobody would find useful!

Is there any database for first episode and chronic stage of schizophrenia

We have been using the NKI Rockland data from the FCONN-1000 study on NITRC for some time. We would like to update our studies to use the most recent release of the NKI Rockland study that is available via COINS. We are having difficulty matching up the subject numbers between the releases. Is there a document that describes how to convert between the codes or provides a table of corresponding subjects ID's?

From the FCONN-1000, we have ID's of the form:
Subject: 3895064
Session: MR_3895064_743f

From COINS, we are finding ID's of the form:
Anonymized ID: A00033735

Thank you,
Bennett

Hi all,

I am planning a project which will involve Freesurfer segmentation of 14 datasets from the CoRR. Before embarking on this, I wanted to ask if anyone has already done it and is willing to share the results. Please let me know!

The datasets in question are BNU1, IPCAS1, IPCAS2, IPCAS8, MRN, NYU2, SWU4, Utah1, HNU1, IPCAS3, JHNU1, SWU1, Utah2, and XHCUMS. I intend to post segmentation results to NITRC after I have done it (unless by luck they should be available already).

Thanks on beforehand,

Gustav

Anybody knows where is the creativity phenotype data of SLIM (Southwest University Longitudinal Imaging Multimodal) project please? I cant not find it.

Hello. I have download all the nifty files of ADHD 200. It includes 988 subjects right now. But I still could not find out where I could download phenotypic.csv files...

In the website of ADHD 200, there is old versions of phenotypic.csv files, which only include a limited samples' information.

Could anyone help me?

Thank you


Regards
Zening Fu