Hi,

Apparently PANDA is not able to invoke FSL, but in an inconsistent way.

I ran the whole pipeline for a sample of subjects and everything was OK (with FSL programs running) until all jobs appeared in 'wait' status (mainly when getting to the deterministic tractography step). I terminated all jobs, quitted and loaded the last .PANDA file in order to resume the pipeline. Now all FSL programs failed.

If I go to Matlab and type system('fslroi') I see the correct output. So Matlab is able to talk to FSL.

I am running PANDA with Matlab R2012a on Mac OS 10.9.3. Please find attached the logs folder (I have excluded WM_label and WM_tract_prob folders to reduce file size).

Any help will be greatly appreciated.

Best regards,
Miguel