open-discussion
open-discussion > RE: FSL jobs failing inconsistently
Jun 21, 2014 01:06 PM | Chenxi Zhao - Beijing Normal University
RE: FSL jobs failing inconsistently
Dear Miguel,
Have you tried to restart your matlab or computer and run the pipeline again to see if anything changes?
If the problem still occurs, please do as follows:
#1 Please input $FSLOUTPUTTYPE in the terminal and check if it is properly set
#2 Input getenv('FSLOUTPUTTYPE') in your matlab command window if the value returned is not NIFTI_GZ, then please run this line in your matlab : setenv('FSLOUTPUTTYPE','NIFTI_GZ')
Also you may refer tothis web page https://www.ibic.washington.edu/wiki/dis...
Best,
Chenxi
Have you tried to restart your matlab or computer and run the pipeline again to see if anything changes?
If the problem still occurs, please do as follows:
#1 Please input $FSLOUTPUTTYPE in the terminal and check if it is properly set
#2 Input getenv('FSLOUTPUTTYPE') in your matlab command window if the value returned is not NIFTI_GZ, then please run this line in your matlab : setenv('FSLOUTPUTTYPE','NIFTI_GZ')
Also you may refer tothis web page https://www.ibic.washington.edu/wiki/dis...
Best,
Chenxi
Threaded View
| Title | Author | Date |
|---|---|---|
| Miguel Burgaleta | Jun 10, 2014 | |
| Zaixu Cui | Jun 14, 2014 | |
| Miguel Burgaleta | Jun 16, 2014 | |
| Zaixu Cui | Jun 18, 2014 | |
| Miguel Burgaleta | Jun 18, 2014 | |
| Chenxi Zhao | Jun 21, 2014 | |
| Miguel Burgaleta | Jun 22, 2014 | |