open-discussion > Network construction
Jun 2, 2015  04:06 AM | joana pereira - KI
Network construction
Dear all,

I have ran the full pipeline of PANDA on Siemens DTI gated data with 64 directions on Mac OS X Yosemite 10.10.2.

I used the full pipeline and no errors came out.

However, when I loaded the white matter tracts built using FACT on trackvis, I saw they were not being reconstructed correctly, probably due to the issues related to how the bvecs are saved in siemens scanners.

Since my main interest in using PANDA is to make network constructions I thought of using the Test Bvecs and Tracking & Network options instead of the full pipeline.

The tracts were reconstructed correctly after using the previous options.

However, the network construction did not finish due to problems with the T1 image.
After I launch the Tracking & Network option, the T1 image disapears from the folder were I kept it and the error below comes out. I tried it several times and the T1 image always disappears.

***************************************************************************

JobName: CopyT1_00010
Status: failed
***************************************************************************
******************************
Log of the (matlab) job : CopyT1_00010
Started on 02-Jun-2015 11:45:07
User: joaper
host : NVNGC02NXAHTG3QD.hs.sll.se
system : unix
******************************
********************
The job starts now !
********************
cp: /Users/joaper/Desktop/FINAL/T1/subj01.nii.gz: No such file or directory
****************
Checking outputs
****************
The output file or directory /Users/joaper/Desktop/FINAL/T1/subj01.nii.gz has not been generated!
**********************************************
02-Jun-2015 11:45:07 : The job has FAILED
Total time used to process the job : 0.01 sec.
**********************************************
ans =
1

Does anyone know how to solve this?

Many thanks!

Threaded View

TitleAuthorDate
Network construction
joana pereira Jun 2, 2015
romane legrand May 28, 2019
cui zaixu Jun 8, 2015
joana pereira Jun 9, 2015
Zaixu Cui Jun 12, 2015
joana pereira Jun 14, 2015