Hello Alfonso,
Thanks for your quick reply! The patch did change the prompt to occur prior to the process starting, however, a new error is occurring that is not happening with the original 15.g (on the same subjects). Any idea what could be causing this error (see below):

ERROR DESCRIPTION:

Error using /
Matrix dimensions must agree.
Error in conn_jobmanager (line 425)
ns=Ns/N;
Error in conn_jobmanager (line 221)
info=conn_jobmanager('createjob',job,N);
Error in conn_setup_preproc (line 370)
info=conn_jobmanager('submit','setup_preprocessing',subjects,parallel_N,[],...
Error in conn (line 755)
ok=conn_setup_preproc('',varargin{2:end});
Error in conn_menumanager (line 119)
feval(CONN_MM.MENU{n0}.callback{n1}{1},CONN_MM.MENU{n0}.callback{n1}{2:end});
CONN v.15.g
SPM12 + DEM FieldMap MEEGtools wfupickatlas
Matlab v.2014a
storage: 1399171.2Gb available