help
help > RE: Question reg second level results
Dec 9, 2015 09:12 AM | Macià Buades-Rotger
RE: Question reg second level results
Hi Johnson,
I'm only a CONN user but I think I can answer your question. Usual whole-brain acceptable thresholds are p<0.005 or p<0.001 uncorrected at the peak level, with a cluster-wise FDR or FWE correction of p<0.05. If you use a peak-level p<0.05 threshold, as you have seen, you get huge clusters which, of course, survive cluster-level correction because it is statistically unlikely that such big clusters appear by chance. However, these massive clusters actually arise because you used an excessively liberal peak-level threshold, and they are furthermore not informative because they are very widespread and don't actually take advantage of the spatial resolution of fMRI.
Bottomline: you want to obtain small but reliable clusters, so use more astringent thresholds.
I hope that helped!
All the best,
Macià
I'm only a CONN user but I think I can answer your question. Usual whole-brain acceptable thresholds are p<0.005 or p<0.001 uncorrected at the peak level, with a cluster-wise FDR or FWE correction of p<0.05. If you use a peak-level p<0.05 threshold, as you have seen, you get huge clusters which, of course, survive cluster-level correction because it is statistically unlikely that such big clusters appear by chance. However, these massive clusters actually arise because you used an excessively liberal peak-level threshold, and they are furthermore not informative because they are very widespread and don't actually take advantage of the spatial resolution of fMRI.
Bottomline: you want to obtain small but reliable clusters, so use more astringent thresholds.
I hope that helped!
All the best,
Macià
Threaded View
| Title | Author | Date |
|---|---|---|
| Johnson H | Oct 17, 2011 | |
| Jake Flinthoff | Aug 15, 2018 | |
| Alfonso Nieto-Castanon | Oct 17, 2011 | |
| Johnson H | Oct 17, 2011 | |
| Alfonso Nieto-Castanon | Oct 17, 2011 | |
| Johnson H | Oct 17, 2011 | |
| Macià Buades-Rotger | Dec 9, 2015 | |
| Alfonso Nieto-Castanon | Dec 11, 2015 | |
