Thanks for the response Andrew,

So there's no sort of standalone client for JIST? I was operating under the impression that I should be able to find some sort of client so no wonder I was confused.

To answer your question as to what I plan on doing, I honestly have no idea. I just started as an research assistant and was instructed to install all sorts of neuroimaging related stuff but my boss isn't in the country for another week so I'm just sort of blundering my way through.

I have already installed the JIST plugin into MIPAV and it appears to work. So my next step would be to install the CLI? Or is that included automatically? Does PyJIST have a GUI or is it just to simplify the CLI commands?