help
help > RE: Edges: Changing Colormap Min/Max Value
Jul 30, 2016 09:07 AM | Mingrui Xia
RE: Edges: Changing Colormap Min/Max Value
Hi,
The Option > Colormap Editor is only for the volume to surface mapping. To fix the edge color range, you have to modify the codes of BrainNet.m
in about line 420, the original codes are:
"tmp = surf.cylinder(:,5);
if max(tmp) ~=min(tmp)
k = 63 /(max(tmp)-min(tmp));
b = 64 - k*max(tmp);
else
k = 0;
b = 64;
end
tmp = round(tmp * k + b);
tmp(tmp < 1) = 1;
tmp(tmp > 64) = 64;
surf.cylinder(:,5) = tmp;"
modify them as:
"tmp = surf.cylinder(:,5);
if max(tmp) ~=min(tmp)
k = 63/(10) ;
b = 64 - k*5;
else
k = 0;
b = 64;
end
tmp = round(tmp * k + b);
tmp(tmp < 1) = 1;
tmp(tmp > 64) = 64;
surf.cylinder(:,5) = tmp;"
After these changes, Please ignore the numbers of colorbar in the final figure. Just ps it to -5 and 5, because at least four other places have to be modified to change the number. It is not necessary.
Best,
Mingrui
The Option > Colormap Editor is only for the volume to surface mapping. To fix the edge color range, you have to modify the codes of BrainNet.m
in about line 420, the original codes are:
"tmp = surf.cylinder(:,5);
if max(tmp) ~=min(tmp)
k = 63 /(max(tmp)-min(tmp));
b = 64 - k*max(tmp);
else
k = 0;
b = 64;
end
tmp = round(tmp * k + b);
tmp(tmp < 1) = 1;
tmp(tmp > 64) = 64;
surf.cylinder(:,5) = tmp;"
modify them as:
"tmp = surf.cylinder(:,5);
if max(tmp) ~=min(tmp)
k = 63/(10) ;
b = 64 - k*5;
else
k = 0;
b = 64;
end
tmp = round(tmp * k + b);
tmp(tmp < 1) = 1;
tmp(tmp > 64) = 64;
surf.cylinder(:,5) = tmp;"
After these changes, Please ignore the numbers of colorbar in the final figure. Just ps it to -5 and 5, because at least four other places have to be modified to change the number. It is not necessary.
Best,
Mingrui
Threaded View
Title | Author | Date |
---|---|---|
Ekarin Pongpipat | Jul 1, 2016 | |
Mingrui Xia | Jul 30, 2016 | |
Noora T | Oct 27, 2016 | |
Mingrui Xia | Oct 27, 2016 | |
Noora T | Oct 27, 2016 | |
Mingrui Xia | Oct 27, 2016 | |
Noora T | Oct 27, 2016 | |
kara | Sep 23, 2020 | |
Mingrui Xia | Sep 25, 2020 | |
kara | Sep 26, 2020 | |
Mingrui Xia | Dec 14, 2020 | |
kara | Sep 26, 2020 | |
kara | Sep 26, 2020 | |