users > RE: No reformatted files produced from Fiji/CMTK registration
Jun 29, 2019  03:06 PM | Greg Jefferis
RE: No reformatted files produced from Fiji/CMTK registration
Hi Zane,

I suggest you zip up a whole directory and share offline and I'll try to take a look on Mon.

> I've selected only to reformat channel 01, run the command, and still only get the Registration directory as an output.

Is there anything in your Registration directory? Perhaps it is failing at an earlier stage.

> Should I expect a Reformat directory, as in the classic gui?

Yes.

> Also, are there equivalent commands to e.g. "--class-ref label", "dof2mat", or "reformatx" in the gui, or is that functionality not supported here?

You can add extra arguments to be passed straight on to the underlying tools within the gui.

Best,

Greg.

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TitleAuthorDate
Zane Aldworth Jun 28, 2019
Greg Jefferis Jun 28, 2019
Zane Aldworth Jun 28, 2019
RE: No reformatted files produced from Fiji/CMTK registration
Greg Jefferis Jun 29, 2019
Zane Aldworth Jun 29, 2019
Greg Jefferis Jun 30, 2019