Hi there,

I'm currently running CONN on a HPC cluster that does not have GUI capabilities. Specifically, I ran seed-to-seed and seed-to-voxel first level models on all of my subjects in parallel across a bunch of compute nodes, leaving me with single-subject P##_conn.mat files. I know it's possible to merge conn files using the GUI, but can't figure out how to merge them from batch for second-level modeling on the HPC.

Is it possible to run conn_merge via a Matlab script rather than via the GUI?

Any advice from folks who have done this would be much appreciated!

Cheers,
Jeremy