Hello,

does anybody has expierence with using CONN for analysing functional MRI data from animals ? (Dog and cat)

We used for the anatomical strutcture a "T1-MPRAGE" (0,7x 0,7x 0,7) and for the functional Sequences a bold-moco.

Now we have some issuses because we are not sure what preprocessing steps we need.
Do we have to isolate the brain (remove muscels, bones....)? And how can we add a brain mask für dogs and cats into CONN (because it looks for me that there is a human brain mask (white and grey matter) already added)?


Do you have perhaps a step-by-step guide or can you give us a hint what we have to do with our data =).

Thank you in advance
Christiane