help > CONN batch scripting: How to skip already-done things?
Apr 15, 2021  05:04 PM | Karl Lerud
CONN batch scripting: How to skip already-done things?
Hi Alfonso et al. I am working on using a script to maintain a fairly large CONN project, using v 20b. I only have one preprocessing step specified: Setup.preprocessing.steps={'functional_art'}; (functional data is otherwise already preprocessed). The processing got pretty far, but errored out because of a small mistake in my Results second-level specifications. I fixed this (I think) and switched Setup.isnew, Setup.overwrite, and Denoising.overwrite to 0 thinking that it would skip the preprocessing etc. that it already did and move right to the Analysis and results, but it appears to be starting over and doing all that again. What is the correct way to skip the things it already did? Should I also set Setup.done and Denoising.done to 0? Also if I add just one or two new subjects, I want it to start at the beginning for only the new subjects. I seem to remember in the GUI this worked pretty intuitively with a pull-down that just said "Do not overwrite already-processed subjects/ROIs" or something to that effect. Thanks, 

Karl

Threaded View

TitleAuthorDate
CONN batch scripting: How to skip already-done things?
Karl Lerud Apr 15, 2021
Karl Lerud Apr 27, 2021
Alfonso Nieto-Castanon May 3, 2021
Karl Lerud May 12, 2021
Alfonso Nieto-Castanon May 12, 2021
Karl Lerud Nov 10, 2021
Alfonso Nieto-Castanon Nov 11, 2021
vaishali Apr 22, 2025
Karl Lerud Nov 11, 2021