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help > Cluster computing - SLURM jobmanager test fails
Apr 28, 2021 08:04 PM | Amy Hegarty - University of Colorado - Boulder
Cluster computing - SLURM jobmanager test fails
Hello!!
I am new to CONN and trying to integrate it with my computing cluster - SLURM. I have added the configuration settings for my cluster computing; however, when I go to test the configuration it hangs indefinitely.
The test does run successfully under the following scenarios:
1. submit sbatch command from terminal with generated shell script $ sbatch .qlog/210427151716257/node.0001210427151716257.sh
2. in matlab: conn_jobmanager('rexec','.qlog/210427151716257/node.0001210427151716257.mat')
3. in matlab: system('sbatch .qlog/210427151716257/node.0001210427151716257.sh')
So its perplexing as I understand the 'con jobmanager test' command and / or the test profile button in the gui under HCP Option >> Configuration both in essence execute option 3 above.
Any ideas why the embedded test does not work while these other intermediate checks do?
Thanks
Amy
I am new to CONN and trying to integrate it with my computing cluster - SLURM. I have added the configuration settings for my cluster computing; however, when I go to test the configuration it hangs indefinitely.
The test does run successfully under the following scenarios:
1. submit sbatch command from terminal with generated shell script $ sbatch .qlog/210427151716257/node.0001210427151716257.sh
2. in matlab: conn_jobmanager('rexec','.qlog/210427151716257/node.0001210427151716257.mat')
3. in matlab: system('sbatch .qlog/210427151716257/node.0001210427151716257.sh')
So its perplexing as I understand the 'con jobmanager test' command and / or the test profile button in the gui under HCP Option >> Configuration both in essence execute option 3 above.
Any ideas why the embedded test does not work while these other intermediate checks do?
Thanks
Amy
Threaded View
Title | Author | Date |
---|---|---|
Amy Hegarty | Apr 28, 2021 | |
Alfonso Nieto-Castanon | May 3, 2021 | |
Amy Hegarty | May 4, 2021 | |
Alfonso Nieto-Castanon | May 4, 2021 | |
Amy Hegarty | May 6, 2021 | |
Alfonso Nieto-Castanon | May 6, 2021 | |
Amy Hegarty | May 7, 2021 | |