Dear all,

I have been trying to import already pre-processed (i.e., realigned and normalized) data into CONN (21a). However, I would like to run the complete denoising procedure including scrubbing. The data was preprocessed using custom scripts, so I had to open a new (blank) project. I have successfully imported the functional and structural data and assigned realignment text files (each containing 6 vectors) to each subject as the first-level covariates. I have labelled this covariate as "realignment", hoping ART would recognise it as realignment parameters. Unfortunately, using otherwise default settings, ART identified as outliers almost all volumes, so I assume it not recognise the realignment covariates.

I have searched the forum, but could not find how exactly the external realignment files should be imported (i.e., labelled) to make ART work properly.

Thanks for any comments

Kind regards

Pavel Hok