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help > RE: Error preparing files for coregistration. Mean functional file not found
Nov 15, 2022 05:11 PM | Alfonso Nieto-Castanon - Boston University
RE: Error preparing files for coregistration. Mean functional file not found
Hi Stefano,
This message indicates that CONN is not finding a reference functional image (typically either an image called meanu091223sbj01m_tp2.nii which was generated during the realign and unwarp step, or an image called art_mean_au091223sbj01m_tp2.nii which was generated by the ART outlier identification step) that can be used to perform functional-anatomical coregistration. If that is not available you can simply check the option that reads "first functional volume as reference" in the coregistration preprocessing step so that CONN will use the first image in the functional data as reference instead.
Hope this helps
Alfonso
Originally posted by Stefano D:
This message indicates that CONN is not finding a reference functional image (typically either an image called meanu091223sbj01m_tp2.nii which was generated during the realign and unwarp step, or an image called art_mean_au091223sbj01m_tp2.nii which was generated by the ART outlier identification step) that can be used to perform functional-anatomical coregistration. If that is not available you can simply check the option that reads "first functional volume as reference" in the coregistration preprocessing step so that CONN will use the first image in the functional data as reference instead.
Hope this helps
Alfonso
Originally posted by Stefano D:
Hi list,
I am performing a longitudinal study on surface. It is not the first time that I do it, and I have followed the guidelines at https://www.youtube.com/watch?v=M8njs_Nw...
Anyway the error listed below occurs:
Error preparing files for coregistration. Mean functional file not found (associated with functional data Desktop/Study/CONN/Arithmetic/Arithmetic_RestingState/au091223sbj01m_tp2.nii ; run either realignment or ART first, or select the option "first functional volume as reference" -#coregtomean field- if you prefer to use the first functional volume instead of the mean functional volume as reference)
Waiting for your suggestion.
Thanks
Stefano
I am performing a longitudinal study on surface. It is not the first time that I do it, and I have followed the guidelines at https://www.youtube.com/watch?v=M8njs_Nw...
Anyway the error listed below occurs:
Error preparing files for coregistration. Mean functional file not found (associated with functional data Desktop/Study/CONN/Arithmetic/Arithmetic_RestingState/au091223sbj01m_tp2.nii ; run either realignment or ART first, or select the option "first functional volume as reference" -#coregtomean field- if you prefer to use the first functional volume instead of the mean functional volume as reference)
Waiting for your suggestion.
Thanks
Stefano
Threaded View
| Title | Author | Date |
|---|---|---|
| Stefano D | Nov 15, 2022 | |
| bizo bizon | Dec 18, 2023 | |
| Alfonso Nieto-Castanon | Nov 15, 2022 | |
| Stefano D | Nov 15, 2022 | |
| Hanyang Ruan | Oct 28, 2023 | |