NITRC R

Neuroimaging Resources Registry

NITRC I R

Neuroimaging Data Repository

NITRC C E

Cloud Computing Environment

| Register | Help

This repository is under review for potential modification in compliance with Administration directives.

dcm2nii

dcm2nii is a popular tool for converting images from the complicated formats used by scanner manufacturers (DICOM, PAR/REC) to the simple NIfTI format used by many scientific tools. dcm2nii works for all modalities (CT, MRI, PET, SPECT) and sequence types. Note: dcm2nii has traditionally been included with MRIcron downloads. This project describes the next generation version which we refer to as dcm2niix. Future releases will supersede the (legacy) dcm2nii distributed with MRIcron.

Execution Options

Download Now:

Execute Now:

See All Execution Options

Specifications

License:

Diagnosis:

Amyotrophic Lateral Sclerosis, Aphasia, Attention Deficit Disorder with Hyperactivity, Autistic Disorder, Brain Concussion, Brain Injuries, Alzheimer Disease, Depression, Dyslexia, Epilepsy, Multiple Sclerosis, Parkinson Disease, Schizophrenia, Stroke, Cocaine-Related Disorders, Tourette Syndrome

Domain:

CT, MR, PET/SPECT

Natural Language:

Operating System:

MacOS, Windows, OS Independent, Linux

Programming Language:

Supported Data Format:

Associations

is part of:

is installed on:

works well with:

Recent Activity - Documents

PubMed Mentions documentation

Integrating MRI radiomics and transcriptomics to predict IDH mutation status and prognosis in glioma. posted by Nobody on Sep 12

PubMed Mentions documentation

Resting-state fMRI-based machine learning for predicting SSRI treatment response in major depressive disorder. posted by Nobody on Sep 12

PubMed Mentions documentation

Magnetic Resonance Imaging-Based Cortical and Subcortical Volumetric Changes in Alzheimer's Disease: Association with Clinical Severity. posted by Nobody on Sep 12

PubMed Mentions documentation

Divergent recovery trajectories after mild traumatic brain injury are characterized by distinct acute profiles of neurofilament light, 4R-tau, and white matter diffusivity. posted by Nobody on Sep 12

PubMed Mentions documentation

EP3 Receptor Deficiency Improves Vascular Remodeling and Cognitive Impairment in Cerebral Small Vessel Disease. posted by Nobody on Jul 18

PubMed Mentions documentation

Differences in resting-state brain networks and gray matter between APOE epsilon2 and APOE epsilon4 carriers in non-dementia elderly. posted by Nobody on Jul 18

PubMed Mentions documentation

Integrating optogenetic fMRI and spatial transcriptomics to reveal circuit-specific gene signatures in fronto- and hippo-thalamic networks. posted by Nobody on Jul 18

PubMed Mentions documentation

Deep learning-based synthetic brain MRI for the assessment of regional atrophy patterns in neurodegenerative diseases. posted by Nobody on Jul 18

PubMed Mentions documentation

Critical role of high-dose Astragalus in Buyang Huanwu Decoction for enhancing neurovascular coupling in a Qi Deficiency and Blood Stasis animal model. posted by Nobody on Jul 18

PubMed Mentions documentation

The Association Between Changes in White Matter Microstructure and Cognitive Function in Older Adults with Mild Cognitive Impairment. posted by Nobody on Jul 18

Recent Activity - Trackers

Inconsistent qform and sform offsets with 3d crop posted by Christopher Kovach on Nov 7, 2024

Support tracker

Can I generate json files without accompanying nii files? posted by Chris Rorden on Apr 6, 2020

Support tracker

Can I generate json files without accompanying nii files? posted by James Waltz on Apr 6, 2020

dcm2niix and DICOM from Siemens Prisma VE11b posted by Chris Rorden on Jun 29, 2016

dcm2niix and DICOM from Siemens Prisma VE11b posted by Jonathan Brooks on Jun 28, 2016

Elimination of isotropic volume Philips data posted by Chris Rorden on Jul 15, 2015

Elimination of isotropic volume Philips data posted by Martijn Froeling on Jul 15, 2015

occasionally wrong bvec for DTI data Philips posted by Martijn Froeling on Jul 15, 2015

Recent Activity - Forums

questions forum

RE: Option -f %H seems to trip over spaces in StudyDescription in version 1.0.20260724 posted by Paul Wright 17 hours ago

questions forum

Option -f %H seems to trip over spaces in StudyDescription in version 1.0.20260724 posted by Paul Wright on Sep 23

questions forum

RE: GLIBC version error posted by Paul Wright on Sep 23

questions forum

RE: Siemens XA images exported as classic dicom posted by Jason Craggs on Sep 22

questions forum

RE: GLIBC version error posted by Chris Rorden on Sep 22

questions forum

RE: Siemens XA images exported as classic dicom posted by Chris Rorden on Sep 22

questions forum

Siemens XA images exported as classic dicom posted by Jason Craggs on Sep 21

questions forum

GLIBC version error posted by Paul Wright on Sep 21

questions forum

RE: Extracting TotalReadOutTime from Siemens XB DICOM files posted by Chris Rorden on Jul 31

questions forum

Extracting TotalReadOutTime from Siemens XB DICOM files posted by Stuart O'Connor on Jul 31

Recent Activity - Files

dcm2nii: dcm2nii (source code, please download MRIcroGL for compiled version) release

GitHub posted by Chris Rorden on Sep 21, 2016

Statistics more information

RRID: SCR_014099

Funding: NIH R01DC009571, NIH U01DC011739

Documents: 2

PubMed Mentions: 208

Forums: 900 messages in 1 forum

News Items: 0

Task Manager: 0 open / 0 total

Tracker: 0 open / 0 total

Total Downloads: 13380

Registered: Sep 24, 2014

Organization: University of South Carolina

Center: McCausland Center for Brain Imaging

Assessments more information

User Reviews (0)

Be the first to review this tool/resource:

Participate!

Monitor a file release

Subscribe to RSS feed

Bookmark this page