When performing computational neuroscience-based analysis, it is often beneficial to view the data. Also, as Matlab is a common tool for such analysis, it is beneficial to visualize the data without having to open an external application that does not run in the Matlab environment.

MRIcroS, a Matlab-based tool, provides:
1) surface mesh visualization (PLY, PIAL, NV, STL,VTK, GIFTI formats)
2) Convert NIfTI voxel images to surface meshes (and save as PLY or VTK)
3) track (TRK files) visualization
4) connectome data (BrainNet Viewer .node and .edge files) visualization
5) intuitive GUI
6) all functions available in the GUI are available through scripting. Therefore, automated scripts can be created
7) can export rendered image as bitmap
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Category:Three Dimensional Display, Surface Rendering
License:BSD License
Domain:Clinical Neuroinformatics, Computational Neuroscience, MR
Programming Language:MATLAB
Supported Data Format:ANALYZE, GIfTI, NIfTI-1, Other Format


is from the makers of:
works well with:

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mricros: MRIcroS 9-Sept-2015 release posted by Chris Rorden on Sep 11, 2015

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3d posted by Shunbo HU on Jan 26, 2015

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mricros: MRIcroS 30-Oct-2014 release posted by Chris Rorden on Oct 30, 2014

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Welcome to Open-Discussion posted by John Del Gaizo on Sep 22, 2014

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Welcome to Help posted by John Del Gaizo on Sep 22, 2014