NeoSegPipeline - MultisegPipeline

This tool allows you to do multi-modality multi-atlas brain MRI segmentation. Two separate strategies are possible: a) a subject-specific atlas segmentation generated from multiple atlases, as well as b) a multi-atlas segmentation (based on ANTS joint label fusion) of regional label definitions. The tool is quite customizable and users can provide their own multi-atlas libraries. A quick demo of an older version of the tools is here: https://www.youtube.com/watch?v=yTr3NJZa... .

Publication https://www.spiedigitallibrary.org/confe...

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Specifications

Category:

Segmentation

License:

Apache License 2.0

Development Status:

5 - Production/Stable/Mature

Domain:

Environment:

X11 Applications

Intended Audience:

End Users

Operating System:

Linux

Programming Language:

C++, Python

Associations

execution requires:

Neoseg
NIRAL Utilities

works well with:

UNC Human Brain Atlas

Recent Activity - Documents

Main Folder documentation

NeosegPipeline User Tutorial posted by Marie Cherel on Jan 28, 2015

Recent Activity - Files

MultiSegPipeline: Version 2.2.1 - RHEL 7 compatible release

MultiSegPipeline_v2.2.1_RHEL_7.zip posted by Martin Styner on Jan 31, 2020

MultiSegPipeline: Atlases for tissue and subcortical structures segmentation. release

atlas_subcortical_roi_24mo.tar.gz posted by Juan Prieto on Mar 28, 2019

MultiSegPipeline: Atlases for tissue and subcortical structures segmentation. release

atlas_tissue_gm_wm_csf_24mo.tar.gz posted by Juan Prieto on Mar 28, 2019

MultiSegPipeline: MultiSegPipeline 2.1.0 release

MultiSegPipeline-2.1.0-Linux.tar.gz posted by Juan Prieto on Mar 28, 2019

MultiSegPipeline: MultiSegPipeline 2.1.0 release

MultiSegPipeline-2.1.0-Darwin.dmg posted by Juan Prieto on Mar 23, 2019

Statistics more information

Home Page

RRID: SCR_014145

Funding: Mechanisms Of Risk And Resilience In ASD: Ontogeny, Phylogeny And Gene Disruption (P50MH100029), Developmental Brain Atlas Tools And Data Applied To Humans And Macaques (R01MH091645), Fetal Programming Of The Newborn And Infant Human Brain (R01MH091351), A Longitudinal MRI Study Of Infants At Risk For Autism (R01HD055741), A Longitudinal MRI Study Of Brain Development In Fragile X Syndrome (R01HD059854), National Alliance for Medical Image Computing (U54EB005149), Early Brain Development In One And Two Year Olds (R01HD053000), Early Brain Development In Twins (R01MH070890).

Documents: 1

PubMed Mentions: 0

Task Manager: 0 open / 0 total

Total Downloads: 741

Registered: Jun 17, 2014

Organization: NIRAL