NeoSegPipeline - MultisegPipeline

This tool allows the tissue segmentation of brain MRI using a subject-specific atlas, as well as a generic multi-atlas based segmentation of regional label definitions. For the tissue segmentation, it generates a subject-specific atlas based on an atlas population propagated to the individual subject image (using optionally also using diffusion images). Then we run a single atlas method with this atlas and obtain some good results. A quick demo on how to use the tool can be seen here: https://www.youtube.com/watch?v=yTr3NJZa... . The MultisegPipeline version allows also regional generic multi-atlas segmentation.

Recent publication https://www.spiedigitallibrary.org/confe...

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MR
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