Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
973449
2
Nilearn
966006
3
BIDScoin
677108
4
ITK-SNAP
466217
5
FCP/INDI PRIVATE SITE
382226
6
IIT Human Brain Atlas (v.5.0)
221922
7
fMRI-CPCA
206569
8
MRIcroGL
204149
9
CONN : functional connectivity toolbox
201787
10
1000 Functional Connectomes Project
183648
11
BrainNet Viewer
118726
12
DTI-TK
96692
13
BXH/XCEDE Tools
87751
14
NIDB - Neuroinformatics Database
83926
15
IBSR
81838
16
BioImage Suite
79872
17
age-ility
79651
18
Multi-Modal MRI Reproducibility Resource
75890
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
71531
20
Solar Eclipse Imaging Genetics tools
67005
21
WFU_PickAtlas
66523
22
JIST: Java Image Science Toolkit
64760
23
BrainFlow
61139
24
GIFTI
53368
25
PANDA: a pipeline tool for diffusion MRI
52704
26
The Neuro Bureau
50778
27
NITRC Computational Environment (NITRC-CE)
50523
28
3T DWI test-retest reliability dataset
46744
29
Functional Imaging BIRN
46573
30
TOADS-CRUISE Brain Segmentation Tools
41807
31
fNIRS Data Analysis Environment
41446
32
EEGLAB
40066
33
Multimodal Visual Consciousness Study Dataset
39131
34
Generalized PPI Toolbox
38767
35
FreeSurfer
37987
36
QuickNII - Serial section aligner to volumetric atlases
36096
37
BrainMap Database
36064
38
Network-Based Statistic (NBS)
34281
39
MIITRA atlas
32745
40
NeuroImaging Analysis Kit (NIAK)
32228
41
UNC 0-1-2 Infant Atlases
31211
42
Brain Biomechanics Imaging Resources
29764
43
Homer2
29298
44
NeuroDebian
27082
45
DWI/DTI Quality Control Tool: DTIPrep
26801
46
Anima
26705
47
TumorSim
26542
48
NYU CSC TestRetest
26409
49
BrainVisa Morphologist extensions
26365
50
Graph Theory GLM (GTG) MATLAB Toolbox
24886
51
XNAT Extras
24594
52
CBS High-Res Brain Processing Tools
22949
53
Melbourne Subcortex Atlas
22744
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
22530
55
4D UNC Neonatal and Infant Cortical Surface Atlases
22237
56
Neuroimaging Made Easy Blog
22200
57
SPHARM-PDM Toolbox
21619
58
SRI24 Atlas: Normal Adult Brain Anatomy
19792
59
Mango
19324
60
Data Format Tools
19179
61
BrainMask Volume Processing Tool
19006
62
Fast Nonlocal Means for MRI denoising
18929
63
Vaa3D and Vaa3D-Neuron
18928
64
Surf Ice
18720
65
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
18572
66
Automatic Registration Toolbox
18510
67
CANDI Neuroimaging Access Point
18375
68
MITK Diffusion
18312
69
Group ICA Toolbox (GIFT and EEGIFT)
17592
70
GRETNA
17533
71
3DSlicerLupusLesionModule
16980
72
Talairach Daemon
16969
73
Subject Order-Independent Group ICA
16616
74
Diffusion Toolkit / TrackVis
16539
75
Awake Rat rsfMRI Database
16505
76
DCP：Diffusion Connectome Pipeline
16327
77
Spatially Constrained Parcellation
16283
78
3D Slicer
16216
79
Freesurfer fsaverage
16057
80
Computational Morphometry Toolkit (CMTK)
15990
81
MRtrix
15897
82
BrainSuite
15818
83
Human Imaging Database (HID)
15616
84
ShapePopulationViewer
15608
85
Hammer And WML Modules for 3D Slicer
15504
86
ENIGMA-DTI pipeline
14961
87
AutoSeg
14619
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14324
89
MARS (Multi-Atlas Robust Segmentation)
14253
90
FSL
14099
91
Brainstorm
13841
92
Artifact Detection Tools (ART)
13430
93
dcm2nii
13225
94
libminc - Medical Image NetCDF library
12873
95
Nighres
12649
96
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12500
97
ABSORB for groupwise registration
12384
98
ANDA
12357
99
Maps4Mipav (Exploratory JIST)
12301
100
NIfTI
12232