Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.66%
  21000 Functional Connectomes Project97.05%
  3ITK-SNAP95.74%
  4BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6rapidtide92.34%
  7MRIcroGL91.81%
  8MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data91.64%
  9Rosetta Bit90.88%
  10DTI-TK90.85%
  11Functional Mixed Processes Models89.05%
  12Multi-Modal MRI Reproducibility Resource88.49%
  13PANDA: a pipeline tool for diffusion MRI88.43%
  14MPScope88.22%
  15TOADS-CRUISE Brain Segmentation Tools86.92%
  16BrainNet Viewer86.11%
  17Hadoop for data colocation85.39%
  18JIST: Java Image Science Toolkit85.23%
  19ATPP: Automatic Tractography-based Parcellation Pipeline84.94%
  20CONN : functional connectivity toolbox84.55%
  21Kurtosis Imaging Network - KIN84.52%
  22BRAINSTestData84.43%
  23ITools Resourceome84.16%
  24Functional Imaging BIRN84.09%
  25Local Label Learning (LLL) Segmentation83.13%
  26CutNII - Custom-angle slicer for brain atlas volumes83.04%
  27HD Neuro-Informatics83.02%
  28Infant Macaque MRI And DTI Templates82.26%
  29Lumina LP- 400 Response System82.21%
  30Philips Users Community82.17%
  31fMRI Results Comparison Library82.15%
  32Statistical Methods for Heterogeneous Neuroimaging Data81.82%
  33HERMES81.06%
  34NUTMEG80.78%
  35ODIN80.52%
  36Stochastic Tractography System80.43%
  37NeuroDebian80.43%
  38Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  39fMRIstat79.79%
  40Bayesian longitudinal low-rank regression79.68%
  41map3d79.67%
  42Turbo-BrainVoyager79.64%
  433T DWI test-retest reliability dataset79.40%
  44DSI Studio79.16%
  45Vaa3D and Vaa3D-Neuron79.10%
  46University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software79.00%
  47Solar Eclipse Imaging Genetics tools78.81%
  48Seg3D78.68%
  49Ogles - OpenGL/OIV Stereotactic Tool78.64%
  50UNC/Utah NAMIC DTI Fiber Analysis Framework78.64%
  51Umeå Brain Arteries78.64%
  52iView X MRI-LR - Eye Tracking for fMRI78.64%
  53L-Neuron78.49%
  54WFU_PickAtlas78.39%
  55XCEDE Schema78.35%
  56BioSig78.08%
  57MITK Diffusion78.08%
  58EEGLAB77.86%
  59Curry 777.81%
  60GazeReader77.81%
  61Functional ROI Atlas77.78%
  62BluePyOpt77.70%
  63SurfStat77.60%
  64CBRAIN77.49%
  65GPU based affine registration77.46%
  66FieldTrip77.34%
  67Biomag Discussion Group on Yahoo77.32%
  68MASIMatlab77.15%
  69XNBC77.14%
  70Brede Toolbox77.01%
  71GIFTI76.96%
  72EEG Toolbox76.93%
  73HCP Harvard/MGH-UCLA76.85%
  74EEProbe76.84%
  75epi-example-dicom76.63%
  76E-Prime Extensions for fMRI76.62%
  77National Database for Autism Research76.52%
  78TurtleSeg76.48%
  79MindSeer76.42%
  80COINS76.26%
  81EONS76.25%
  82Insight Toolkit76.17%
  83Spatial Analysis 3D76.15%
  84ASA - Advanced Source Analysis76.11%
  85NIPY Diffusion Imaging Analysis76.10%
  86Brain Products' EEG/fMRI Hardware76.05%
  87PING75.85%
  88Cytoseg75.83%
  89HCP WU-Minn Consortium75.77%
  90In vivo MEMRI-based Rat Brain Atlas75.71%
  91NICE-SIGN75.68%
  92MNI Macaque Atlases75.65%
  93GesTr75.60%
  94cmrep75.59%
  95ParaView75.52%
  96PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  97Framework for Open Programmatic Access75.38%
  98LIBEEP75.38%
  99NIPY File IO75.18%
  100Micro-Manager75.17%
  101A robust method for correcting partial volume effect in ASL data75.12%
  102NFT: Neuroelectromag Forward Modeling75.04%
  103Brainsight74.90%
  104Faceted Search Based Ontology Visualizer74.89%
  105INCF Neuroimaging Data Sharing74.89%
  106Net Station74.81%
  107UCLA Multimodal Connectivity Database74.77%
  108FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  109brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  110EEGVIS74.66%
  111ProbabilisticBiasCorrection74.60%
  112I/OWA 374.57%
  113dtiBrainScope74.54%
  114DICOM_UploadGUI74.52%
  115Connectome File Format (CFF)74.48%
  116APERTURE74.44%
  117mask_explorer74.44%
  118Bisque74.41%
  119BrainLiner.jp74.34%
  120Advanced Normalization Tools74.32%
  121nitime74.27%
  122INVIZIAN74.26%
  123Anatomist74.21%
  124NordicNeuroLab74.14%
  125XCEDE Schema74.09%
  126Presentation74.05%
  127connectir74.03%
  128NC-IGT Fast Imaging Library74.00%
  129Age Related Atrophy Dataset74.00%
  130ERPLAB73.92%
  131VIEWPixx73.91%
  132CANDI Share: Schizophrenia Bulletin 200873.91%
  133Triangle BioSystems73.89%
  134MINC - Medical Image NetCDF73.86%
  135BrainMaps.org73.86%
  136Surf Ice73.85%
  137XNAT Extras73.82%
  138Pydicom73.82%
  139The fMRI Data Center73.82%
  140PySurfer73.76%
  141Statistics Online Computational Resource73.45%
  142TARQUIN MRS analysis package73.40%
  143NIRx NIRS Neuroimaging73.39%
  144PyNIfTI73.36%
  145Neuroimaging Made Easy Blog73.30%
  146COGNISION (TM) System73.25%
  147OpenElectrophy73.22%
  148NIPY Community73.20%
  149fMRI-CPCA73.13%
  150Augmented Reality Mirror73.06%
  151NITRC Community73.05%
  152ENIGMA-DTI pipeline72.99%
  153NeuroScope72.95%
  154ASL data processing tool box72.94%
  155MagPro Magnetic Stimulator (TMS)72.94%
  156Lipsia72.87%
  157MedINRIA72.87%
  158Mouse Connectome Project (MCP)72.79%
  159Fiber Tracking Tool72.78%
  160Fiber-tracking based on Finsler distance72.78%
  161SumsDB Database72.73%
  162Fiber Optic Button Response System72.72%
  163CUDA accelerated spherical model M/EEG72.66%
  164False Discovery Rate Weighted72.64%
  165DATAPixx72.63%
  166Waxholm Space Atlas of the C57BL/6J Mouse Brain72.63%
  167OpenFMRI72.62%
  168Generalized PPI Toolbox72.62%
  169DONE: Detection of Outlier NEurons72.55%
  170ArtRepair for robust fMRI72.45%
  171WhiteText - annotated neuroscience text72.44%
  172NIPY Structural and Functional Analysis72.36%
  173CLEAVE: Large Data Set ANOVA72.21%
  174scikit-learn72.17%
  175Mag Design and Engineering72.10%
  176Working Memory Trainer72.06%
  177PPMI72.00%
  178SFMProject71.92%
  179vuTools71.88%
  180Hitachi Optical Topography System71.88%
  181BRAINSConstellationDetector71.85%
  182MRI Digital Projection System71.59%
  183Computational Morphometry Toolkit (CMTK)71.56%
  184ShapeViewer71.52%
  185Normative Independent Component Analysis71.48%
  186LDDMM71.43%
  187fNIR Devices71.38%
  188OpenMEEG71.38%
  189Data Format Tools71.34%
  190TORTOISE71.25%
  191NeuroElf71.23%
  192ADNI71.16%
  1934D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  194Network-Based Statistic (NBS)71.04%
  195COST71.02%
  196NeuroSynth70.83%
  197GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity70.80%
  198Viking Viewer for Connectomics70.74%
  199SR Research EyeLink Eye Trackers70.67%
  200LONI Provenance Editor70.63%
  201CoCoMac Brain Connectivity Database70.62%
  202MazeSuite70.54%
  203BrainBrowser70.49%
  204Pipeline Neuroimaging VirtualEnvironment70.41%
  205BioImage Suite70.34%
  206Biomedical Informatics Research Network70.34%
  207Disease State Prediction70.12%
  208NCANDA: Data Integration Component70.08%
  209Open Connectome Project70.04%
  210dcm2nii70.01%
  211REST: a toolkit for resting-state fMRI69.97%
  212OEI fMRI compatible olfactometer69.96%
  213Source Information Flow Toolbox69.86%
  214Journals69.76%
  215Fast Fourier Transform (FFT) JavaLibrary69.75%
  216Laboratory of Neuro Imaging (LONI)69.74%
  217IMOD - 3D Reconstruction and Analysis69.72%
  218BrainVISA69.44%
  219Mouse BIRN69.44%
  220BrainGraph Editor 1.0 Beta69.44%
  221BrainVisa Morphologist extensions69.32%
  222LIMO EEG69.17%
  223Center for Computational Biology (CCB)69.15%
  224SLIC: a whole brain parcellation toolbox69.06%
  225FADTTSter68.99%
  226Synchronized Histological Image View Arc68.86%
  227cbiNifti: Matlab/Octave Nifti library68.82%
  228Nilearn68.81%
  229Analyze68.78%
  230BrainMap Database68.77%
  231DPARSF68.68%
  232Textpresso - literature search engine68.67%
  233NeuroshareLibrary68.65%
  234E-Prime 3.068.58%
  235PST MRI Simulator68.50%
  236PsychoPy68.14%
  237UNC 0-1-2 Infant Atlases68.13%
  238CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  239Grantees Meeting for NITRC68.08%
  240Create DWI Atlas67.98%
  241The Neuro Bureau67.85%
  242BrainMagix SPM Viewer67.70%
  243BioMesh3D67.70%
  244Multiscale Weighted Principal Component Regression67.66%
  245NeuroWeb - NeuroImaging Database67.63%
  246NeuriteTracer67.45%
  247MultiTracer version 267.40%
  248dinifti67.32%
  249SMAC: Spatial Multi-category Angle-based Classifier67.28%
  250Rodent Cortical Thickness Analysis67.26%
  251Low Resolution Brain Electromagnetic Tomography67.25%
  252N2A67.19%
  253Brede Wiki67.00%
  254SCIRun66.94%
  255Rockland Download Link Script66.78%
  256MEGSIM66.69%
  257Homer266.59%
  258NIPY Pipeline and Interfaces66.47%
  259CAMINO-TRACKVIS66.47%
  260BrainMask Volume Processing Tool66.43%
  261Mango66.42%
  262HDBIG66.40%
  263ImageVis3D66.18%
  2643D Slicer65.93%
  265Ultra-high field atlas for DBS planning65.79%
  266Spatially Constrained Parcellation65.60%
  267Books65.58%
  268Group Level Imputation of Statistic Maps65.49%
  269Connectome Viewer65.38%
  270SCRalyze65.38%
  271ShapeTools65.31%
  272HFH_DTI_DATA65.15%
  273MRBrainS Evaluation Framework / Challenge65.15%
  274PICASSO skull stripping tool65.14%
  275CBICA: Cancer and Phenomics Toolkit (CapTk)65.11%
  276ExPosition Packages65.09%
  277MRI_CVPR65.08%
  278NIREP64.96%
  279Signed Differential Mapping64.85%
  280Parkinson's Disease Discovery Database64.60%
  281MARS (Multi-Atlas Robust Segmentation)64.59%
  282IIT Human Brain Atlas (v.4.1)64.50%
  283Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  284Diffusion Warp64.08%
  285UNC-Wisconsin Neurodevelopment Rhesus MRI Database63.93%
  286Non-rigid groupwise registration method63.75%
  287Web Interfaces for Multiscale Images63.57%
  288MarsBaR region of interest toolbox63.54%
  289Hammer And WML Modules for 3D Slicer63.50%
  290Diffusion Toolkit / TrackVis63.38%
  291MRtrix63.36%
  292Temporal-lobe.com63.32%
  293NeoSegPipeline63.20%
  294Brain Entropy in space and time (BEst)63.14%
  295FSL extensions63.14%
  296POS2SPM63.12%
  297Medical Image Visualization and Analysis63.06%
  298AFNI63.05%
  299CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)63.03%
  300Talairach Daemon62.99%
  301Neuroimaging Data Access Group62.68%
  302The Cognitive Atlas62.43%
  303Tractography based on Riemannian geodesics and tensor adjugates62.21%
  304INSTAR (Infant Joint Segmentation and Registration)62.14%
  305NeuroImaging Analysis Kit (NIAK)62.07%
  306Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration61.88%
  307fNIRS Data Analysis Environment61.85%
  308Mindboggle-101 manually labeled brains61.81%
  309Monte Carlo Simulation Software: tMCimg61.67%
  310Neural ElectroMagnetic Ontologies61.65%
  311PubBrain Database61.64%
  312MoTrak - Head Motion Tracking System61.63%
  313CIGAL61.11%
  314SPM for fNIRS toolbox61.08%
  315Automatic Registration Toolbox61.00%
  316Mesh-based Monte Carlo (MMC)60.92%
  317BrainVoyager60.80%
  318MRI denoising60.63%
  319Human Imaging Database (HID)60.39%
  320Neuroinformatics - The Journal60.36%
  321SPHARM-PDM Toolbox60.20%
  322Monte Carlo eXtreme (MCX)60.16%
  323IATR60.11%
  324GRETNA59.89%
  325MONSTR Multi Contrast Brain Stripping59.80%
  326Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  327Neoseg59.61%
  328IBSR59.43%
  329iso2mesh59.41%
  330Functional Connectivity Community59.20%
  331BRAINSSurfaceStats59.18%
  332Progression Score Model Toolkit59.14%
  333TAPIR58.98%
  334Statistical Methods for Manifold-valued Data58.97%
  335NIRAL Utilities58.71%
  336Anima58.64%
  337Scalable Brain Atlas58.15%
  338FSL58.13%
  339Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  340pyxnat57.94%
  341Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  342BRAINSTracer57.82%
  3433DSlicerLupusLesionModule57.67%
  344BRAINSCortex57.21%
  345Waxholm Space Atlas of the Sprague Dawley Rat Brain57.16%
  346BiofilmQuant57.09%
  3472008 MICCAI MS Lesion Segmentation Challenge56.48%
  348VectorValuedHistogramNormalizer55.65%
  349BraTumIA (Brain Tumor Image Analysis)55.62%
  350AutoTract55.51%
  351Emory-UNC Developmental Macaque Structural and DTI Atlases55.44%
  352Spinal Cord Toolbox55.13%
  353ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis55.11%
  354Center for Functional Neuroimaging Tech54.98%
  355International Imaging Genetics Conference54.88%
  356Subject Order-Independent Group ICA54.79%
  357NITRC Enhanced Services54.48%
  358Draw3D and Meshinator54.46%
  359Group ICA Toolbox (GIFT and EEGIFT)54.40%
  360DTIProcess ToolKit54.23%
  361TumorSim53.79%
  362VMTK in 3D Slicer53.66%
  363NIfTI53.64%
  364MCIC- schizophrenic and matched control data53.00%
  3653d Brain Atlas Reconstructor52.90%
  366BrainVoyager Brain Tutor52.83%
  367Licensing52.43%
  368VANDPIRE52.38%
  369C-PAC52.38%
  370ANTsR52.31%
  371STAMP Atlases for Brain Abnormality Detection52.19%
  372Generation R Pediatric MRI Resources52.13%
  373Artifact Detection Tools (ART)52.04%
  374LONI Pipeline Environment52.02%
  375SpineSegmentation module for 3DSlicer51.99%
  376EEG human categorization data51.96%
  377MRI Defacer51.63%
  378Parallel Stochastic Ion Channel Simulator51.43%
  379CANDI Neuroimaging Access Point50.67%
  380BRAINSMush50.66%
  381Pipeline system for Octave and Matlab50.55%
  382factory_t1_dti50.47%
  383Lightweight Data Pipeline50.41%
  384Diffusional Kurtosis Estimator50.30%
  385ABSORB for groupwise registration50.04%
  386CBS High-Res Brain Processing Tools50.00%
  387shapeAnalysisMANCOVA - SPHARM tools49.87%
  388NYU CSC TestRetest49.56%
  389ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  390Maps4Mipav (Exploratory JIST) 49.50%
  391ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  392Single-subject Resting state fMRI Reproducibility Resource49.46%
  393Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations49.36%
  394MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  395Multiple Correlation Function Tool48.96%
  396Epsilon Radial Networks48.81%
  397Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  398GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  399SIVIC48.42%
  400BXH/XCEDE Tools48.31%
  401Conferences, Workshops and Meetings48.24%
  402SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation47.92%
  403Orientation Distribution Function in Constant Solid Angle (CSA-ODF)47.79%
  404ANIMA47.79%
  405Infant Functional Atlas47.68%
  406GenGen47.52%
  407FBIRN Image Processing Scripts (FIPS)47.50%
  408SegEditing47.50%
  409Brainnetome DiffusionKit47.49%
  410BRAINSFit47.32%
  411fNIRS Research Database47.26%
  412Task Independent Fluctuations Discussion47.24%
  413The Cancer Imaging Archive (TCIA)47.14%
  414HistoloZee - 3D histology reconstruction and co-registration with MRI47.07%
  415Simple Medical Imaging Library Interface (SMILI)46.88%
  416NODDI Matlab Toolbox46.87%
  417MRI Dataset for Hippocampus Segmentation46.59%
  418Local Manifold Learning for Multi-atlas segmentation46.38%
  419PESTICA & SLOMOCO: physio and motion correction tools45.77%
  420Diffusion MRI @ DKFZ Heidelberg45.52%
  421FreeSurfer45.50%
  422Wisconsin White Matter Hyperintensities Segmentation Toolbox45.41%
  423Graph Theory GLM (GTG) MATLAB Toolbox45.36%
  424BrainSuite45.31%
  425DWI/DTI Quality Control Tool: DTIPrep45.24%
  426Optseq - fMRI Event Scheduler45.15%
  427Vervet Probabilistic Atlas44.95%
  428Best Practices for Software Development44.91%
  429Spanish Resting State Network44.84%
  430S-rep Fitting, Statistics, and Segmentation44.76%
  431BetA-Series COrrelation44.72%
  432MATLAB Tutorial on Diffusion Tensor MRI44.49%
  433NeuroImage Field-of-View Normalization Tool44.45%
  434Bayesian Connectivity Analysis software (BCA)44.44%
  435Imeka Tractography Service44.35%
  436AHEAD44.13%
  437Phoneme-Syllable Tsinghua University CS&T 201143.96%
  438EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  439In vivo MEMRI-based Mouse Brain Atlas43.68%
  440Preprocessed Connectomes Project43.46%
  441Brainnetome fMRI toolkit43.45%
  442QCQP43.44%
  443Human Connectome Project (HCP)43.41%
  444NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space43.39%
  445Multicomponent T2 estimation with stimulated echo correction43.38%
  446Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function43.36%
  447Robust Brain Extraction (ROBEX)43.31%
  448SRI24 Atlas: Normal Adult Brain Anatomy43.01%
  449Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  450BRAINSROIAuto42.50%
  451Graphtools42.47%
  452Longitudinal MS Lesion Imaging Archive42.35%
  453NIDB - Neuroinformatics Database42.27%
  454ABC (Atlas Based Classification)41.99%
  455Deformable Template Model for Brain Analysis41.98%
  456ShapeComplexityIndex41.87%
  457FMRIpower41.84%
  458GIMME (Group Iterative Multiple Model Estimation)41.79%
  459Brain Connectivity Toolbox41.41%
  460YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  461HAMMER: Deformable Registration41.38%
  462Brainance DTI Module41.33%
  463Cluster reporter41.03%
  464Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  465Neurolucida40.86%
  466Atlasing of the basal ganglia40.84%
  467age-ility40.80%
  468iBEAT40.50%
  469CBFBIRN40.45%
  470SPM40.27%
  471REX40.18%
  472Stereo Investigator40.09%
  473XNAT39.33%
  474Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)39.24%
  475DeID - A data sharing tool for neuroimaging studies39.17%
  4767T Structural MRI scans ATAG39.17%
  477DTI Atlas Builder39.04%
  478DTI-TEMPLATE-RHESUS-MACAQUES39.03%
  479Quantitative Diffusion Tools39.01%
  480HFH_DTI_TLE_TOOLS38.87%
  481ICA Components from Kessler, et al, JAMA Psychiatry 201638.83%
  482FiberViewerLight38.56%
  483Functional Analysis of Diffusion Tensor38.47%
  484Fast Nonlocal Means for MRI denoising38.39%
  485Gibbsconnectome38.30%
  486GLIRT37.84%
  487LONI Debabeler37.56%
  488VAMCA Cortical Meta-analysis Toolbox37.53%
  489DICOMConvert37.27%
  490BrainCSI37.02%
  491JIST Resources for Algorithm Development36.52%
  492DTI-Reg36.47%
  493isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab36.06%
  494MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis35.57%
  495AutoSeg35.54%
  496MriWatcher35.48%
  497Task-based fMRI atlases35.34%
  498JIP fMRI Analysis Toolkit35.25%
  499masked ICA (mICA) Toolbox35.24%
  500Stark Cross-Sectional Aging35.22%
  501AMILab35.01%
  502RapidArt34.88%
  503GTRACT34.29%
  504BrainSolution34.24%
  505MABMIS: Multi-Atlas Based Segmentation34.21%
  506cPPI Toolbox for fMRI33.81%
  507Computational Anatomy Toolbox - CAT33.72%
  508CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.33.59%
  509Templates for In vivo Mouse Brain33.51%
  510PyMVPA33.13%
  511Brainscape33.00%
  512Cerebellar White Matter Atlas32.67%
  513DRAMMS Deformable Image Registration Toolbox32.58%
  514peak_nii32.45%
  515DTI denoising32.30%
  516CIFTI Connectivity File Format32.14%
  517Diffusion Tractography with Kalman Filter31.97%
  518Functional Connectivity Analysis Tool for near-infrared spectroscopy data31.74%
  519PHYCAA+: adaptive physiological noise correction for BOLD fMRI31.70%
  520ShapeWorks31.68%
  521High-quality diffusion-weighted imaging of Parkinson's disease31.38%
  522SkullStrippingToolkit31.35%
  523Slicer3 Example Modules31.35%
  524MRIcroS31.12%
  525DicomBrowser31.00%
  526GIMIAS30.79%
  527Multi-fiber Reconstruction from DW-MRI30.73%
  5283-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood30.54%
  529Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  530HAMMER Suite30.27%
  531MRI Studio30.20%
  532Image Synthesis30.08%
  533Paradigm30.08%
  534BASH4RfMRI29.93%
  535ADJUST - EEG Automatic Artifact Removal29.89%
  536Program for optimal design of blocked fMRI experiments29.83%
  537GAMBIT29.74%
  538Manually Labeled MRI Brain Scan Database29.61%
  539MIPAV29.57%
  540NPTK29.57%
  541DFBIdb29.33%
  542NIH Pediatric MRI Data Repository29.32%
  543SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  544BRAINSDemonWarp29.19%
  545Group Information Guided ICA28.98%
  546NITRC GForge Extensions28.87%
  547fMRI Grocer28.81%
  548Numerical Fibre Generator (NFG)28.60%
  549ASHS: Automatic Segmentation of Hippocampal Subfields28.51%
  550HI-SPEED Software Packets28.15%
  551Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)28.07%
  552NIH-CIDI Lung Segmentation Tool28.06%
  553UNC Human Brain Atlas28.06%
  554R-package for adaptive DWI analysis28.00%
  555Standard Amygdalar fMRI Probe Tasks27.92%
  556Colin 3T/7T High-resolution Atlas27.85%
  557Hierarchical Functional Networks in Resting State fMRI27.78%
  558Clinical Toolbox for SPM27.54%
  559Brainnetome Atlas Viewer27.53%
  560DW-MRI registration in FSL27.45%
  561A label fusion using CRF27.43%
  562ShapePopulationViewer27.43%
  563Corpus Callosum Thickness Profile Analysis Pipeline27.41%
  564Template Image Processing Library27.30%
  565MR Connectome Automated Pipeline (MRCAP)27.19%
  566C8: Corpus Callosum Computations27.10%
  567DTI Fiber Tract Statistics27.10%
  568ProCTSeg26.94%
  569MisterI26.85%
  570SPHARM-MAT26.85%
  571eConnectome26.47%
  5723DMeshMetric26.46%
  573ARCTIC26.41%
  574Simulated Diffusion-Weighted Datasets26.30%
  575MeshValmet: Validation Metric for Meshes25.85%
  576BrainVoyager Viewer25.80%
  577minc-toolkit25.74%
  578Robust Biological Parametric Mapping25.72%
  579volBrain: online MRI segmentation25.60%
  580CleanLine25.51%
  581BrainParser25.49%
  582Convert MNI coordinates to or from XYZ25.45%
  583Gradient Non-linearity Unwarping Tool25.43%
  5843T MRI data set on structural brain-behavior correlations25.27%
  585WFU_Pipeline25.08%
  586Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)24.93%
  587MeshGen - Surface meshes from volumetric segmentation data24.91%
  588MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation24.85%
  589MASI Label Fusion24.84%
  590GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data24.81%
  591FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.63%
  592Automatic Segmentation Tool Adapter24.59%
  593MIView24.54%
  594LORIS24.52%
  595TetraMetrix24.27%
  596AtlasConstructionToolkit24.24%
  597Finsler tractography module for Slicer24.11%
  598WFU_BPM23.96%
  599R-package for adaptive fMRI analysis23.78%
  600Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising23.72%
  601Spatial Statistical Parametric Mapping23.44%
  602MNE - Minimum Norm Current Estimates23.43%
  603SnPM23.41%
  604aBEAT23.33%
  605B0 and eddy current correction for DTI23.28%
  606Functional Regression Analysis of DTI23.20%
  607Morphometry BIRN23.14%
  608RFT_FDR22.92%
  609A joint sparse partial correlation method for estimating group functional networks22.91%
  610CCSeg - Corpus Callosum Segmentation22.86%
  611Elastic Net-based Parcellation (ENPA)22.61%
  612Web Game for Collaborative Labeling22.48%
  613DOTS WM tract segmentation22.42%
  614Corpus callosum and brain segmentations from ABIDE database22.39%
  615OASIS22.32%
  616Camino22.25%
  617Notion ResearchPACS22.21%
  618JHU Proj. in Applied Medical Imaging22.20%
  619BTK : Baby Brain Toolkit22.05%
  620xjView, a viewing tool for SPM22.04%
  621POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  622Inter-Group Registration Toolbox21.99%
  623LONI Inspector21.98%
  624MOCA21.91%
  625Iterative dual-regression with sparse prior21.85%
  626PICSL Multi-Atlas Segmentation Tool21.84%
  627Estimating Functional Brain Network based on Modularity Prior21.77%
  628VoxBo21.64%
  629Slicer3 Module Rician noise filter21.57%
  6304D Atlas Construction21.46%
  631Diffusion MRI - In-vivo and Phantom Data21.35%
  632Mindboggle: automated brain labeling21.10%
  633Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation21.05%
  634Brainstorm21.04%
  635SOCK20.87%
  636MGH Neonatal/Pediatric ADC atlases20.76%
  637cortex20.73%
  638freesurfR20.70%
  639DentalTools20.18%
  640STAPLE20.18%
  641Generalized Covariance Analysis (gCVA)20.00%
  642NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.93%
  643GAMMA19.88%
  644Efficient Permutation Testing19.76%
  645Single-index Varying Coefficient Model for Functional Responses19.70%
  646AURA tools : AUtomated Retinal Analysis tools19.38%
  647imcalc: SPM batch image calulator19.29%
  648UManitoba-JHU Functionally-Defined Human White Matter Atlas19.18%
  649Fusion ICA Toolbox (FIT)19.13%
  650Displacement Field Viewer19.13%
  651DW-MRI Random Walk Simulator19.05%
  652NIRx2nirs: A NIRx to .nirs data converter19.01%
  653INIA19 Primate Brain Atlas18.98%
  654BrainNetworkConstructionAnalysisPlatform18.95%
  655NiiStat18.94%
  656ALVIN - Lateral Ventricle Segmentation18.88%
  657Connectome Workbench18.83%
  658Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.83%
  659Randomized Denoising Autoencoders for Neuroimaging18.77%
  660FIV18.65%
  661Landman NeuroImaging Tools18.33%
  662Resource Ontology Discussion Group18.27%
  663CMFreg18.26%
  664Penn Hippocampus Atlas18.24%
  665Diffusion MRI Tool18.02%
  666SPM_SS - fMRI functional localizers18.00%
  667Hitachi2nirs17.94%
  668SINOMO (SIngular NOde MOtifs)17.71%
  669MouseBIRN Atlasing Toolkit (MBAT)17.55%
  670Parallel Graph-theoretical Analysis Toolkit17.36%
  671Brain lesion segmentation tool using SVM17.34%
  672NVM17.30%
  673XFSL: An FSL toolbox17.23%
  674BCILAB17.18%
  675fMRI Classification in R16.99%
  676Automated Image Registration (AIR)16.90%
  677resting-state pediatric imaging template16.48%
  678MIAS Registration Toolkit16.33%
  679Serotonin Transporter HighResolution PET Template16.21%
  680Brain Segmentation Testing Protocol16.19%
  681ValMap: simple statistical mapping tool16.08%
  682Wavelet-based Image Fusion15.96%
  683Using Make for Neuroimaging Workflow: Manual and Examples15.83%
  684DICCCOL predictor (v0.1)15.77%
  685vis: SPM Visualized Statistics toolbox15.77%
  686CoCoMac-Paxinos3D viewer15.74%
  687Jim15.61%
  688NIRS-SPM15.57%
  689Segmentation Validation Engine15.51%
  690IDeA Lab brain image processing suite15.38%
  691MGDM: Multi Geometric Deformable Model15.32%
  692TractoR: Tractography with R15.29%
  693Internet Brain Volume Database (IBVD)15.16%
  694DIAMOND15.11%
  695The Brain Coactivation Map15.02%
  696NeuroLens15.02%
  697MRI Neuroanatomy Labeling Services14.67%
  698CamBA14.65%
  699VarTbx – Variability Toolbox14.54%
  700Brainwaver14.50%
  701Subject Library14.45%
  702Measure Projection Toolbox (MPT)14.34%
  703Cluster Extent Correction14.29%
  704Level-set Segmentation for Slicer314.13%
  705LONI De-identification Debablet14.09%
  706Wisconsin Cortical Thickness Analysis (CTA) Toolbox13.79%
  707Microstructural correlation toolbox13.76%
  708Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI13.72%
  709NeuroPub Visualizer13.65%
  710Kymata Atlas13.60%
  711BrainDecoderToolbox13.51%
  712Pythagorean Displacement and Motion Regressors13.51%
  713BrainFX13.35%
  714COMPARE13.34%
  715mach2qtl13.27%
  716mach2dat13.14%
  717N3 - MINC B0 nonuniformity correction12.85%
  718BrainVision Analyzer12.61%
  719SVV12.58%
  720gCCA12.55%
  721Brainvox12.36%
  722MouseTracker12.28%
  723M312.26%
  724fanDTasia Java Applet: DT-MRI Processing11.88%
  725MEG Tools11.87%
  726UNC Primate Brain Atlas11.18%
  727INCF11.07%
  728Caret11.02%
  729MaCH10.86%
  730MaCH-Admix10.46%
  731CDF-HC PointSetReg10.23%
  732Rodent Brain Extraction Tool10.17%
  733ShapeComplexAtlas10.08%
  734Distributome9.292%