Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
947523
2
Nilearn
881779
3
BIDScoin
507468
4
ITK-SNAP
458738
5
FCP/INDI PRIVATE SITE
371732
6
IIT Human Brain Atlas (v.5.0)
210091
7
fMRI-CPCA
204640
8
MRIcroGL
197185
9
CONN : functional connectivity toolbox
188484
10
1000 Functional Connectomes Project
181896
11
BrainNet Viewer
111024
12
DTI-TK
95166
13
IBSR
80404
14
BioImage Suite
77140
15
BXH/XCEDE Tools
73824
16
Multi-Modal MRI Reproducibility Resource
73323
17
age-ility
71704
18
NIDB - Neuroinformatics Database
71485
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66942
20
WFU_PickAtlas
65804
21
JIST: Java Image Science Toolkit
56940
22
Solar Eclipse Imaging Genetics tools
55853
23
BrainFlow
52622
24
The Neuro Bureau
49705
25
PANDA: a pipeline tool for diffusion MRI
49638
26
GIFTI
47631
27
Functional Imaging BIRN
44396
28
NITRC Computational Environment (NITRC-CE)
44300
29
3T DWI test-retest reliability dataset
43265
30
fNIRS Data Analysis Environment
40026
31
EEGLAB
40026
32
TOADS-CRUISE Brain Segmentation Tools
39708
33
FreeSurfer
37985
34
Generalized PPI Toolbox
36367
35
BrainMap Database
33900
36
Multimodal Visual Consciousness Study Dataset
33185
37
QuickNII - Serial section aligner to volumetric atlases
32545
38
Network-Based Statistic (NBS)
31364
39
MIITRA atlas
29524
40
UNC 0-1-2 Infant Atlases
29336
41
Homer2
27893
42
Brain Biomechanics Imaging Resources
26960
43
NeuroDebian
26208
44
NeuroImaging Analysis Kit (NIAK)
26074
45
Anima
25986
46
NYU CSC TestRetest
25588
47
BrainVisa Morphologist extensions
25323
48
TumorSim
23832
49
XNAT Extras
23499
50
DWI/DTI Quality Control Tool: DTIPrep
23394
51
Neuroimaging Made Easy Blog
21105
52
Graph Theory GLM (GTG) MATLAB Toolbox
20988
53
Melbourne Subcortex Atlas
20872
54
4D UNC Neonatal and Infant Cortical Surface Atlases
20080
55
CBS High-Res Brain Processing Tools
19715
56
Mango
19081
57
Data Format Tools
18342
58
Surf Ice
18258
59
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18158
60
MITK Diffusion
18135
61
Automatic Registration Toolbox
18109
62
Vaa3D and Vaa3D-Neuron
17984
63
SRI24 Atlas: Normal Adult Brain Anatomy
17785
64
Fast Nonlocal Means for MRI denoising
17694
65
BrainMask Volume Processing Tool
17343
66
GRETNA
17343
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16949
68
CANDI Neuroimaging Access Point
16626
69
Group ICA Toolbox (GIFT and EEGIFT)
16576
70
Talairach Daemon
16471
71
SPHARM-PDM Toolbox
16379
72
Diffusion Toolkit / TrackVis
16156
73
3D Slicer
16079
74
Spatially Constrained Parcellation
15943
75
Subject Order-Independent Group ICA
15728
76
DCP：Diffusion Connectome Pipeline
15632
77
Freesurfer fsaverage
15511
78
3DSlicerLupusLesionModule
15447
79
Computational Morphometry Toolkit (CMTK)
15370
80
BrainSuite
15092
81
Awake Rat rsfMRI Database
14887
82
Human Imaging Database (HID)
14659
83
Hammer And WML Modules for 3D Slicer
13987
84
MRtrix
13930
85
Brainstorm
13835
86
SVNTest
13724
87
FSL
13634
88
ENIGMA-DTI pipeline
13577
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13463
90
ShapePopulationViewer
13259
91
dcm2nii
13161
92
MARS (Multi-Atlas Robust Segmentation)
13008
93
Artifact Detection Tools (ART)
12840
94
libminc - Medical Image NetCDF library
12827
95
Nighres
12005
96
BrainVISA
11780
97
NIfTI
11767
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11702
99
Task Independent Fluctuations Discussion
11597
100
SPM for fNIRS toolbox
11478