Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.71%
  21000 Functional Connectomes Project97.06%
  3UNC detail-preserved longitudinal 0-3-6-9-12 months-old atlas96.76%
  4ITK-SNAP95.84%
  5BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  6CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  7MRIcroGL92.59%
  8rapidtide92.34%
  9Segmentation-based Multimodal Rigid Image Registration91.93%
  10Tissue Thickness Estimation via Minimum Line Integrals91.48%
  11Rosetta Bit90.88%
  12DTI-TK90.54%
  13Functional Mixed Processes Models89.05%
  14PANDA: a pipeline tool for diffusion MRI88.48%
  15Multi-Modal MRI Reproducibility Resource88.42%
  16MPScope88.22%
  17BrainNet Viewer86.97%
  18TOADS-CRUISE Brain Segmentation Tools86.09%
  19CONN : functional connectivity toolbox85.68%
  20Cavernous Hemangioma: Epilepsy & ADD84.87%
  21CBICA: PREDICT84.68%
  22JIST: Java Image Science Toolkit84.66%
  23Kurtosis Imaging Network - KIN84.52%
  24CBICA: Brain Tumor Modeling - Coupled Solver84.40%
  25ITools Resourceome84.16%
  26Hadoop for data colocation84.04%
  27CBICA: Brain Anatomy Simulator83.98%
  28Functional Imaging BIRN83.94%
  29nonfractal83.87%
  30Local Label Learning (LLL) Segmentation83.13%
  31HD Neuro-Informatics83.02%
  32Infant Macaque MRI And DTI Templates82.26%
  33Lumina LP- 400 Response System82.21%
  34Philips Users Community82.17%
  35HERMES81.06%
  36NUTMEG80.78%
  37NeuroDebian80.53%
  38Vaa3D and Vaa3D-Neuron80.52%
  39ODIN80.52%
  40Stochastic Tractography System80.43%
  41Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  42Solar Eclipse Imaging Genetics tools79.91%
  43fMRIstat79.79%
  44Bayesian longitudinal low-rank regression79.68%
  45map3d79.67%
  46Turbo-BrainVoyager79.64%
  473T DWI test-retest reliability dataset79.25%
  48DSI Studio79.11%
  49WFU_PickAtlas78.93%
  50MITK Diffusion78.89%
  51MASIMatlab78.71%
  52Seg3D78.68%
  53Ogles - OpenGL/OIV Stereotactic Tool78.64%
  54Umeå Brain Arteries78.64%
  55iView X MRI-LR - Eye Tracking for fMRI78.64%
  56L-Neuron78.49%
  57XCEDE Schema78.35%
  58BioSig78.08%
  59NITRC Image Repository (NITRC-IR)78.00%
  60Framewise Integrated Real-time MRI Monitoring77.89%
  61Curry 777.81%
  62GazeReader77.81%
  63Functional ROI Atlas77.78%
  64BluePyOpt77.70%
  65SurfStat77.60%
  66CBRAIN77.49%
  67GPU based affine registration77.46%
  68FieldTrip77.34%
  69GIFTI77.33%
  70Biomag Discussion Group on Yahoo77.32%
  71VALiDATe29 squirrel monkey brain atlas77.21%
  72XNBC77.14%
  73Brede Toolbox77.01%
  74EEG Toolbox76.93%
  75HCP Harvard/MGH-UCLA76.85%
  76EEProbe76.84%
  77epi-example-dicom76.63%
  78E-Prime Extensions for fMRI76.62%
  79National Database for Autism Research76.52%
  80TurtleSeg76.48%
  81MindSeer76.42%
  82COINS76.26%
  83EONS76.25%
  84Insight Toolkit76.17%
  85Spatial Analysis 3D76.15%
  86ASA - Advanced Source Analysis76.11%
  87NIPY Diffusion Imaging Analysis76.10%
  88Brain Products' EEG/fMRI Hardware76.05%
  89Cytoseg75.83%
  90HCP WU-Minn Consortium75.77%
  91In vivo MEMRI-based Rat Brain Atlas75.71%
  92NICE-SIGN75.68%
  93MNI Macaque Atlases75.65%
  94GesTr75.60%
  95cmrep75.59%
  96ParaView75.52%
  97PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  98Framework for Open Programmatic Access75.38%
  99LIBEEP75.38%
  100NIPY File IO75.18%
  101Micro-Manager75.17%
  102CBICA: PORTR75.13%
  103A robust method for correcting partial volume effect in ASL data75.12%
  104NFT: Neuroelectromag Forward Modeling75.04%
  105dcm2nii75.03%
  106CBICA: ODVBA74.97%
  107Brainsight74.90%
  108Faceted Search Based Ontology Visualizer74.89%
  109INCF Neuroimaging Data Sharing74.89%
  110Net Station74.81%
  111UCLA Multimodal Connectivity Database74.77%
  112FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  113brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  114EEGVIS74.66%
  115ProbabilisticBiasCorrection74.60%
  116I/OWA 374.57%
  117dtiBrainScope74.54%
  118DICOM_UploadGUI74.52%
  119Connectome File Format (CFF)74.48%
  120APERTURE74.44%
  121mask_explorer74.44%
  122Bisque74.41%
  123BrainLiner.jp74.34%
  124Advanced Normalization Tools74.32%
  125Generalized PPI Toolbox74.30%
  126nitime74.27%
  127INVIZIAN74.26%
  128Anatomist74.21%
  129NordicNeuroLab74.14%
  130XCEDE Schema74.09%
  131Presentation74.05%
  132connectir74.03%
  133NC-IGT Fast Imaging Library74.00%
  134Age Related Atrophy Dataset74.00%
  135ERPLAB73.92%
  136VIEWPixx73.91%
  137CANDI Share: Schizophrenia Bulletin 200873.91%
  138Triangle BioSystems73.89%
  139BrainMaps.org73.86%
  140Pydicom73.82%
  141The fMRI Data Center73.82%
  142PySurfer73.76%
  143XNAT Extras73.68%
  144fMRI-CPCA73.61%
  145NITRC Community73.53%
  146MINC - Medical Image NetCDF73.50%
  147Statistics Online Computational Resource73.45%
  148TARQUIN MRS analysis package73.40%
  149NIRx NIRS Neuroimaging73.39%
  150CBICA: Datasets73.38%
  151PyNIfTI73.36%
  152Neuroimaging Made Easy Blog73.36%
  153Nilearn73.33%
  154Surf Ice73.32%
  155COGNISION (TM) System73.25%
  156OpenElectrophy73.22%
  157NIPY Community73.20%
  158PVS_Enhance72.99%
  159NeuroScope72.95%
  160ASL data processing tool box72.94%
  161MagPro Magnetic Stimulator (TMS)72.94%
  162Lipsia72.87%
  163MedINRIA72.87%
  164Mouse Connectome Project (MCP)72.79%
  165Fiber Tracking Tool72.78%
  166Fiber-tracking based on Finsler distance72.78%
  167MIRCen Macaca fascicularis brain MRI segmentation dataset72.76%
  168SumsDB Database72.73%
  169Celeritas: Fiber Optic Response System72.72%
  170CUDA accelerated spherical model M/EEG72.66%
  171False Discovery Rate Weighted72.64%
  172DATAPixx72.63%
  173OpenFMRI72.62%
  174EEGLAB72.62%
  175Network-Based Statistic (NBS)72.56%
  176DONE: Detection of Outlier NEurons72.55%
  177ArtRepair for robust fMRI72.45%
  178WhiteText - annotated neuroscience text72.44%
  179NIPY Structural and Functional Analysis72.36%
  180CLEAVE: Large Data Set ANOVA72.21%
  181scikit-learn72.17%
  182Mag Design and Engineering72.10%
  183Working Memory Trainer72.06%
  184PPMI72.00%
  185SFMProject71.92%
  186vuTools71.88%
  187Hitachi Optical Topography System71.88%
  188BRAINSConstellationDetector71.85%
  189Computational Morphometry Toolkit (CMTK)71.72%
  190Hyperion: MRI Digital Projection System71.59%
  191ShapeViewer71.52%
  192Normative Independent Component Analysis71.48%
  193LDDMM71.43%
  194BioImage Suite71.41%
  195fNIR Devices71.38%
  196OpenMEEG71.38%
  197TORTOISE71.25%
  198NeuroElf71.23%
  199ADNI71.16%
  2004D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  201COST71.02%
  202ENIGMA-DTI pipeline71.00%
  203Data Format Tools70.94%
  204GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity70.87%
  205NeuroSynth70.83%
  206Viking Viewer for Connectomics70.74%
  207SR Research EyeLink Eye Trackers70.67%
  208LONI Provenance Editor70.63%
  209CoCoMac Brain Connectivity Database70.62%
  210MazeSuite70.54%
  211BrainBrowser70.49%
  212Pipeline Neuroimaging VirtualEnvironment70.41%
  213Biomedical Informatics Research Network70.34%
  214BrainVisa Morphologist extensions70.15%
  215Open Connectome Project70.04%
  216Waxholm Space Atlas of the Sprague Dawley Rat Brain69.97%
  217REST: a toolkit for resting-state fMRI69.97%
  218OEI fMRI compatible olfactometer69.96%
  219Source Information Flow Toolbox69.78%
  220Journals69.76%
  221Fast Fourier Transform (FFT) JavaLibrary69.75%
  222Laboratory of Neuro Imaging (LONI)69.74%
  223IMOD - 3D Reconstruction and Analysis69.72%
  224Primatologist69.64%
  225Mouse BIRN69.44%
  226BrainGraph Editor 1.0 Beta69.44%
  227LIMO EEG69.17%
  228Center for Computational Biology (CCB)69.15%
  229UNC 0-1-2 Infant Atlases69.10%
  230FADTTSter68.99%
  231PhysIO Toolbox68.93%
  232Synchronized Histological Image View Arc68.86%
  233cbiNifti: Matlab/Octave Nifti library68.82%
  234Analyze68.78%
  235DPARSF68.68%
  236Textpresso - literature search engine68.67%
  237NeuroshareLibrary68.65%
  238SMAC: Spatial Multi-category Angle-based Classifier68.62%
  239Homer268.61%
  240E-Prime68.58%
  241BrainMap Database68.55%
  242MRI Simulator68.50%
  243The Neuro Bureau68.46%
  244BrainVISA68.41%
  245PsychoPy68.14%
  246CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  247Grantees Meeting for NITRC68.08%
  248Create DWI Atlas67.98%
  249UNC/Utah NAMIC DTI Fiber Analysis Framework67.77%
  250BrainMagix SPM Viewer67.70%
  251BioMesh3D67.70%
  252Multiscale Weighted Principal Component Regression67.66%
  253NeuroWeb - NeuroImaging Database67.63%
  254NeuriteTracer67.45%
  255MultiTracer version 267.40%
  256dinifti67.32%
  257Low Resolution Brain Electromagnetic Tomography67.25%
  258N2A67.19%
  259Brede Wiki67.00%
  260SCIRun66.94%
  261Rockland Download Link Script66.78%
  262Mango66.74%
  263MEGSIM66.69%
  264UNC-Wisconsin Neurodevelopment Rhesus MRI Database66.64%
  265Prospective Acquisition CorrEction (PACE) Resting State EPI data66.59%
  266Signed Differential Mapping66.59%
  267Spatially Constrained Parcellation66.58%
  268IIT Human Brain Atlas (v.4.1)66.52%
  269NIPY Pipeline and Interfaces66.47%
  270CAMINO-TRACKVIS66.47%
  2713D Slicer66.42%
  272HDBIG66.40%
  273ImageVis3D66.18%
  274Augmented Reality Mirror66.10%
  275TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA65.97%
  276NCANDA: Data Integration Component65.90%
  277BrainMask Volume Processing Tool65.73%
  278HFH_DTI_DATA65.62%
  279Books65.58%
  280Group Level Imputation of Statistic Maps65.49%
  281Connectome Viewer65.38%
  282SCRalyze65.38%
  283ShapeTools65.31%
  284MRBrainS Evaluation Framework / Challenge65.15%
  285ExPosition Packages65.09%
  286MRI_CVPR65.08%
  287NIREP64.96%
  288fNIRS Data Analysis Environment64.72%
  289Parkinson's Disease Discovery Database64.60%
  290Longitudinal neuroimaging hippocampal markers for diagnosing Alzheimer's disease64.48%
  291PICASSO skull stripping tool64.35%
  292Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  293MARS (Multi-Atlas Robust Segmentation)64.20%
  294Diffusion Warp64.08%
  295CBICA: Multi Atlas Skull Stripping (MASS)64.06%
  296A 3T probabilistic Locus Coeruleus atlas64.02%
  297Non-rigid groupwise registration method63.75%
  298Web Interfaces for Multiscale Images63.57%
  299Diffusion Toolkit / TrackVis63.56%
  300MarsBaR region of interest toolbox63.54%
  301Temporal-lobe.com63.32%
  302SPM for fNIRS toolbox63.29%
  303NeoSegPipeline63.20%
  304Hammer And WML Modules for 3D Slicer63.15%
  305Brain Entropy in space and time (BEst)63.14%
  306FSL extensions63.14%
  307Medical Image Visualization and Analysis63.06%
  308AFNI63.05%
  309Anima62.98%
  310Neuroimaging Data Access Group62.68%
  311The Cognitive Atlas62.43%
  312CBICA: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters (MUSE)62.31%
  313Tractography based on Riemannian geodesics and tensor adjugates62.21%
  314The UNC EBDS neonatal DTI fiber atlas61.89%
  315Talairach Daemon61.85%
  316Mayo Clinic Adult Lifespan Template and Atlases61.82%
  317Mindboggle-101 manually labeled brains61.81%
  318NeuroImaging Analysis Kit (NIAK)61.80%
  319Monte Carlo Simulation Software: tMCimg61.67%
  320Neural ElectroMagnetic Ontologies61.65%
  321PubBrain Database61.64%
  322MoTrak: Head Motion Tracking System61.63%
  323Rodent Cortical Thickness Analysis61.39%
  324GRETNA61.37%
  325CBICA: PHI Estimator61.34%
  326MRtrix61.24%
  327IBSR61.14%
  328CIGAL61.11%
  329Mesh-based Monte Carlo (MMC)60.92%
  330MRI denoising60.63%
  331CBICA: MOE60.58%
  332Neuroinformatics - The Journal60.36%
  333CBICA: DTIDROID60.27%
  334CBICA: GONDOLA60.17%
  335Monte Carlo eXtreme (MCX)60.16%
  336IATR60.11%
  337Automatic Registration Toolbox59.72%
  338Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  339Neoseg59.61%
  340Human Imaging Database (HID)59.48%
  341iso2mesh59.41%
  342SPHARM-PDM Toolbox59.26%
  343Functional Connectivity Community59.20%
  344BRAINSSurfaceStats59.18%
  345Progression Score Model Toolkit59.14%
  346TAPIR58.98%
  347Statistical Methods for Manifold-valued Data58.97%
  348University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software58.93%
  349NIRAL Utilities58.71%
  350BrainVoyager58.30%
  351Scalable Brain Atlas58.15%
  352Disease State Prediction58.15%
  353Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  354pyxnat57.94%
  355Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  3562008 MICCAI MS Lesion Segmentation Challenge57.91%
  357FSL57.81%
  358BiofilmQuant57.09%
  359BRAINSTools57.00%
  3603DSlicerLupusLesionModule56.83%
  361NITRC Computational Environment (NITRC-CE)56.57%
  362VectorValuedHistogramNormalizer55.65%
  363BraTumIA (Brain Tumor Image Analysis)55.62%
  364Center for Functional Neuroimaging Tech55.56%
  365AutoTract55.51%
  366Group Sparse Canonical Correlation Analysis55.42%
  367Spinal Cord Toolbox55.13%
  368International Imaging Genetics Conference54.88%
  369Draw3D and Meshinator54.46%
  370Group ICA Toolbox (GIFT and EEGIFT)54.35%
  371DTIProcess ToolKit54.23%
  372TumorSim54.07%
  373DTI Connectome Pipeline53.76%
  374VMTK in 3D Slicer53.66%
  375Subject Order-Independent Group ICA53.37%
  376NIfTI53.09%
  377MCIC- schizophrenic and matched control data53.00%
  3783d Brain Atlas Reconstructor52.90%
  379Artifact Detection Tools (ART)52.77%
  380Diffusional Kurtosis Estimator52.41%
  381BrainVoyager Brain Tutor52.39%
  382C-PAC52.38%
  383CBS High-Res Brain Processing Tools52.36%
  384ANTsR52.31%
  385STAMP Atlases for Brain Abnormality Detection52.19%
  386Licensing52.06%
  387SpineSegmentation module for 3DSlicer51.99%
  388EEG human categorization data51.96%
  389fMRI Results Comparison Library51.64%
  390Parallel Stochastic Ion Channel Simulator51.43%
  391MRI Defacer51.42%
  392Denoising of redundant MR series51.40%
  393LONI Pipeline Environment50.83%
  394VANDPIRE50.79%
  395NYU CSC TestRetest50.76%
  396BRAINSMush50.66%
  397A probabilistic subcortical atlas for PD50.62%
  398factory_t1_dti50.47%
  399Lightweight Data Pipeline50.41%
  400ABSORB for groupwise registration50.29%
  401The Grid Code Analysis Toolbox (GridCAT)50.03%
  402shapeAnalysisMANCOVA - SPHARM tools49.87%
  403CANDI Neuroimaging Access Point49.74%
  404ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  405ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  406Single-subject Resting state fMRI Reproducibility Resource49.40%
  407ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis49.38%
  408Waxholm Space Atlas of the C57BL/6J Mouse Brain49.23%
  409Pipeline system for Octave and Matlab49.11%
  410MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  411Multiple Correlation Function Tool48.96%
  412Epsilon Radial Networks48.81%
  413Maps4Mipav (Exploratory JIST) 48.78%
  414Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations48.77%
  415Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  416GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  417SIVIC48.42%
  418Simple Medical Imaging Library Interface (SMILI)48.31%
  419Conferences, Workshops and Meetings48.24%
  420PREDiCT48.15%
  421BXH/XCEDE Tools47.96%
  422ATPP: Automatic Tractography-based Parcellation Pipeline47.95%
  423NODDI Matlab Toolbox47.83%
  424ANIMA47.79%
  425UNC CEDARS INFANT ATLAS47.68%
  426GenGen47.52%
  427BRAINSFit47.32%
  428fNIRS Research Database47.26%
  429DWI/DTI Quality Control Tool: DTIPrep47.18%
  430BrainSuite47.16%
  431The Cancer Imaging Archive (TCIA)47.14%
  432Graph Theory GLM (GTG) MATLAB Toolbox47.10%
  433Mixed Effect Model of Genetic-Set and Environment Interaction46.67%
  434SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation46.64%
  435BetA-Series COrrelation46.62%
  436MRI Dataset for Hippocampus Segmentation46.59%
  437Task Independent Fluctuations Discussion46.54%
  438FBIRN Image Processing Scripts (FIPS)46.44%
  439Local Manifold Learning for Multi-atlas segmentation46.38%
  440Gibbsconnectome46.14%
  441GIMME (Group Iterative Multiple Model Estimation)45.91%
  442isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab45.76%
  443FreeSurfer45.60%
  444Robust Brain Extraction (ROBEX)45.53%
  445Diffusion MRI @ DKFZ Heidelberg45.52%
  446PESTICA & SLOMOCO: physio and motion correction tools45.28%
  447QModeling45.21%
  448MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data45.11%
  449Statistical Methods for Heterogeneous Neuroimaging Data45.03%
  450Generation R Pediatric MRI Resources44.99%
  451Vervet Probabilistic Atlas44.95%
  452Best Practices for Software Development44.91%
  453CutNII - Custom-angle slicer for brain atlas volumes44.89%
  454Spanish Resting State Network44.84%
  455NeuroImage Field-of-View Normalization Tool44.45%
  456Bayesian Connectivity Analysis software (BCA)44.44%
  457Wisconsin White Matter Hyperintensities Segmentation Toolbox44.41%
  458Imeka Tractography Service44.35%
  459Optseq - fMRI Event Scheduler44.18%
  460Phoneme-Syllable Tsinghua University CS&T 201143.96%
  461SLIC: a whole brain parcellation toolbox43.83%
  462EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  463In vivo MEMRI-based Mouse Brain Atlas43.68%
  464AHEAD43.67%
  465Magnetic Resonance Angiography Atlas Dataset43.49%
  466Preprocessed Connectomes Project43.46%
  467QCQP43.44%
  468MATLAB Tutorial on Diffusion Tensor MRI43.43%
  469Human Connectome Project (HCP)43.41%
  470Multicomponent T2 estimation with stimulated echo correction43.38%
  471SRI24 Atlas: Normal Adult Brain Anatomy43.26%
  472FMRIpower43.24%
  473S-rep Fitting, Statistics, and Segmentation43.22%
  474Brain Connectivity Toolbox43.08%
  475Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  476Atlasing of the basal ganglia42.61%
  477Brainnetome DiffusionKit42.56%
  478BRAINSROIAuto42.50%
  479Graphtools42.47%
  480NIDB - Neuroinformatics Database42.27%
  481MONSTR Multi Contrast Brain Stripping41.93%
  482ShapeComplexityIndex41.87%
  483SPM41.80%
  484iBEAT41.62%
  485Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function41.53%
  486ABC (Atlas Based Classification)41.45%
  487YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  488Brainance DTI Module41.33%
  489Brainnetome fMRI toolkit41.30%
  490REX41.18%
  491Cluster reporter41.03%
  492Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  493HAMMER: Deformable Registration40.93%
  494Neurolucida40.86%
  495NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space40.81%
  496CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)40.48%
  497CBFBIRN40.45%
  498Stereo Investigator40.09%
  499MPI-Leipzig Mind-Brain-Body Dataset39.61%
  500Zebrafish heart segmentation39.45%
  501POS2SPM39.14%
  5027T Structural MRI scans ATAG39.14%
  503Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)39.10%
  504Quantitative Diffusion Tools39.01%
  505age-ility38.97%
  506SegEditing38.76%
  507DTI-TEMPLATE-RHESUS-MACAQUES38.67%
  508FiberViewerLight38.56%
  509XNAT38.48%
  510Functional Analysis of Diffusion Tensor38.30%
  511S3DL Sparse Dictionary Learning based MR Image and Lesion Segmentation38.29%
  512Fast Nonlocal Means for MRI denoising37.77%
  513A Shimadzu to .nirs data converter37.63%
  514VAMCA Cortical Meta-analysis Toolbox37.53%
  515LONI Debabeler37.49%
  516DTI Atlas Builder37.04%
  517BrainCSI37.02%
  518masked ICA (mICA) Toolbox36.66%
  519DTI-Reg36.47%
  520GLIRT36.26%
  521Task-based fMRI atlases35.34%
  522Stark Cross-Sectional Aging35.22%
  523The De-identification Toolbox - A data sharing tool for neuroimaging studies35.21%
  524JIST Resources for Algorithm Development35.11%
  525Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration35.09%
  526AMILab35.01%
  527RapidArt34.88%
  528AutoSeg34.81%
  529JIP fMRI Analysis Toolkit34.67%
  530GTRACT34.29%
  531CIFTI Connectivity File Format34.17%
  532Emory-UNC Developmental Macaque Structural and DTI Atlases34.06%
  533MABMIS: Multi-Atlas Based Segmentation33.83%
  534cPPI Toolbox for fMRI33.81%
  535BrainSolution33.78%
  536CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)33.48%
  537ToolConnect33.34%
  538PyMVPA33.13%
  539DicomBrowser32.94%
  540MRIcroS32.92%
  541Brainscape32.90%
  542DRAMMS Deformable Image Registration Toolbox32.70%
  543MriWatcher32.69%
  544ICA Components from Kessler, et al, JAMA Psychiatry 201632.68%
  545CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.32.39%
  546DTI denoising32.30%
  547Computational Anatomy Toolbox - CAT31.76%
  548Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)31.70%
  549ADJUST - EEG Automatic Artifact Removal31.62%
  550Diffusion Tractography with Kalman Filter31.61%
  551Clinical Toolbox for SPM31.60%
  552High-quality diffusion-weighted imaging of Parkinson's disease31.28%
  5533-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood31.26%
  554Slicer3 Example Modules31.15%
  555ShapeWorks31.01%
  556GIMIAS30.79%
  557peak_nii30.64%
  558Mid-Space-Independent Deformable Image Registration30.61%
  559ASHS: Automatic Segmentation of Hippocampal Subfields30.37%
  560Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  561Cerebellar White Matter Atlas30.23%
  562MRTool29.96%
  563BASH4RfMRI29.93%
  564Program for optimal design of blocked fMRI experiments29.83%
  565Functional Connectivity Analysis Tool for near-infrared spectroscopy data29.83%
  566Manually Labeled MRI Brain Scan Database29.82%
  567MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis29.75%
  568HAMMER Suite29.65%
  569NITRC GForge Extensions29.63%
  570MRI Studio29.57%
  571NPTK29.57%
  572Paradigm29.39%
  573DFBIdb29.33%
  574GAMBIT29.23%
  575SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  576Image Synthesis29.09%
  577MIPAV29.06%
  578SkullStrippingToolkit29.04%
  579Templates for In vivo Mouse Brain28.96%
  580NIH-CIDI Lung Segmentation Tool28.79%
  581NIH Pediatric MRI Data Repository28.72%
  582UNC Human Brain Atlas28.36%
  583Numerical Fibre Generator (NFG)28.08%
  584INSTAR (Infant Joint Segmentation and Registration)28.05%
  585Group Information Guided ICA27.90%
  586Colin 3T/7T High-resolution Atlas27.71%
  587Corpus Callosum Thickness Profile Analysis Pipeline27.64%
  588DICOMConvert27.64%
  589PHYCAA+: adaptive physiological noise correction for BOLD fMRI27.63%
  590Hierarchical Functional Networks in Resting State fMRI27.50%
  591A label fusion using CRF27.43%
  592R-package for adaptive DWI analysis27.42%
  593HI-SPEED Software Packets27.33%
  594SPHARM-MAT26.99%
  595fMRI Grocer26.96%
  596ProCTSeg26.94%
  597MisterI26.85%
  598CleanLine26.64%
  599Template Image Processing Library26.59%
  600DTI Fiber Tract Statistics26.41%
  601eConnectome26.25%
  602DW-MRI registration in FSL26.25%
  603ARCTIC26.16%
  604Brainnetome Atlas Viewer26.04%
  605HFH_DTI_TLE_TOOLS25.86%
  606Convert MNI coordinates to or from XYZ25.76%
  607Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)25.65%
  608Deformable Template Model for Brain Analysis25.65%
  609BrainVoyager Viewer25.60%
  610Robust Biological Parametric Mapping25.57%
  611C8: Corpus Callosum Computations25.54%
  612BrainParser25.52%
  613Brainstorm25.43%
  614MeshValmet: Validation Metric for Meshes25.14%
  615ShapePopulationViewer25.01%
  616Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography24.85%
  617Gradient Non-linearity Unwarping Tool24.77%
  618WFU_Pipeline24.55%
  619LORIS24.52%
  620Simulated Diffusion-Weighted Datasets24.50%
  6213DMeshMetric24.46%
  622HistoloZee - 3D histology reconstruction and co-registration with MRI24.36%
  623MR Connectome Automated Pipeline (MRCAP)24.31%
  624MIView24.19%
  625Multi-fiber Reconstruction from DW-MRI24.16%
  626Finsler tractography module for Slicer24.11%
  627FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.04%
  628Automatic Segmentation Tool Adapter24.02%
  629GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data23.89%
  6303T MRI data set on structural brain-behavior correlations23.82%
  631WFU_BPM23.79%
  632MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation23.75%
  633MNE - Minimum Norm Current Estimates23.49%
  634TetraMetrix23.45%
  635minc-toolkit23.37%
  636R-package for adaptive fMRI analysis23.25%
  637Functional Regression Analysis of DTI23.20%
  638MASI Label Fusion23.17%
  639aBEAT23.16%
  640Morphometry BIRN23.14%
  641Elastic Net-based Parcellation (ENPA)23.14%
  642Diffusion MRI - In-vivo and Phantom Data23.08%
  643B0 and eddy current correction for DTI23.07%
  644RFT_FDR22.92%
  645SnPM22.86%
  646NiiStat22.86%
  647UManitoba-JHU Functionally-Defined Human White Matter Atlas22.68%
  648OASIS22.58%
  649CCSeg - Corpus Callosum Segmentation22.42%
  650JHU Proj. in Applied Medical Imaging22.20%
  651Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising22.17%
  652POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  653volBrain: online MRI segmentation22.02%
  654Web Game for Collaborative Labeling21.91%
  655Inter-Group Registration Toolbox21.86%
  656Iterative dual-regression with sparse prior21.85%
  657Estimating Functional Brain Network based on Modularity Prior21.77%
  658Spatial Statistical Parametric Mapping21.55%
  659PICSL Multi-Atlas Segmentation Tool21.50%
  660LONI Inspector21.50%
  661Notion ResearchPACS21.48%
  662Camino21.43%
  663xjView, a viewing tool for SPM21.29%
  664DOTS WM tract segmentation21.20%
  6654D Atlas Construction21.17%
  666Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data21.10%
  667Slicer3 Module Rician noise filter21.08%
  668SOCK20.83%
  669BTK : Baby Brain Toolkit20.79%
  670Standard Amygdalar fMRI Probe Tasks20.76%
  671Corpus callosum and brain segmentations from ABIDE database20.74%
  672MGH Neonatal/Pediatric ADC atlases20.66%
  673VoxBo20.55%
  674freesurfR20.36%
  675cortex20.29%
  676Longitudinal Multiple Sclerosis Lesion Imaging Archive20.24%
  677A joint sparse partial correlation method for estimating group functional networks20.21%
  678DentalTools20.18%
  679Efficient Permutation Testing20.03%
  680Ultra-high field atlas for DBS planning19.80%
  681NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.80%
  682Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation19.77%
  683STAPLE19.66%
  684GAMMA19.54%
  685Parallel Graph-theoretical Analysis Toolkit19.40%
  686INIA19 Primate Brain Atlas19.25%
  687Generalized Covariance Analysis (gCVA)19.24%
  688imcalc: SPM batch image calulator19.17%
  689Fusion ICA Toolbox (FIT)19.13%
  690Hitachi2nirs19.02%
  691AtlasConstructionToolkit18.92%
  692NIRx2nirs: A NIRx to .nirs data converter18.92%
  693ALVIN - Lateral Ventricle Segmentation18.88%
  694MOCA18.76%
  695Connectome Workbench18.63%
  696FIV18.55%
  697Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.46%
  698Randomized Denoising Autoencoders for Neuroimaging18.34%
  699BrainNetworkConstructionAnalysisPlatform18.16%
  700Landman NeuroImaging Tools17.97%
  701Resource Ontology Discussion Group17.97%
  702SINOMO (SIngular NOde MOtifs)17.94%
  703Displacement Field Viewer17.94%
  704DW-MRI Random Walk Simulator17.93%
  705Penn Hippocampus Atlas17.88%
  706NVM17.85%
  707MouseBIRN Atlasing Toolkit (MBAT)17.55%
  708AURA tools : AUtomated Retinal Analysis tools17.27%
  709fMRI Classification in R17.15%
  710CBICA: WMLS (White Matter Lesion Segmentation)17.03%
  711CMFreg17.02%
  712SPM_SS - fMRI functional localizers17.02%
  713Diffusion MRI Tool17.00%
  714Brain Segmentation Testing Protocol16.88%
  715BCILAB16.65%
  716resting-state pediatric imaging template16.48%
  717Automated Image Registration (AIR)16.44%
  718XFSL: An FSL toolbox16.34%
  719MIAS Registration Toolkit16.33%
  720Jim15.89%
  721NIRS-SPM15.85%
  722ValMap: simple statistical mapping tool15.79%
  723NeuroLens15.76%
  724CoCoMac-Paxinos3D viewer15.74%
  725Wavelet-based Image Fusion15.59%
  726Segmentation Validation Engine15.51%
  727MGDM: Multi Geometric Deformable Model15.32%
  728IDeA Lab brain image processing suite15.22%
  729TractoR: Tractography with R15.18%
  730vis: SPM Visualized Statistics toolbox15.12%
  731DIAMOND15.11%
  732Internet Brain Volume Database (IBVD)15.08%
  733CBICA: COMPARE14.79%
  734DICCCOL predictor (v0.1)14.75%
  735CamBA14.72%
  736Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI14.42%
  737Single-index Varying Coefficient Model for Functional Responses14.39%
  738Brainwaver14.32%
  739Cluster Extent Correction14.27%
  740MeshGen - Surface meshes from volumetric segmentation data14.20%
  741Level-set Segmentation for Slicer314.18%
  742MRI Neuroanatomy Labeling Services14.16%
  743Measure Projection Toolbox (MPT)14.10%
  744Subject Library14.04%
  745LONI De-identification Debablet13.94%
  746The Brain Coactivation Map13.75%
  747Serotonin Transporter HighResolution PET Template13.64%
  748Microstructural correlation toolbox13.60%
  749BrainDecoderToolbox13.51%
  750NeuroPub Visualizer13.41%
  751Using Make for Neuroimaging Workflow: Manual and Examples13.20%
  752BrainFX13.19%
  753Kymata Atlas13.04%
  754Pythagorean Displacement and Motion Regressors12.91%
  755N3 - MINC B0 nonuniformity correction12.85%
  756mach2dat12.83%
  757BrainVision Analyzer12.68%
  758gCCA12.61%
  759Wisconsin Cortical Thickness Analysis (CTA) Toolbox12.58%
  760VarTbx – Variability Toolbox12.55%
  761mach2qtl12.43%
  762SVV12.37%
  763Brainvox12.36%
  764fanDTasia Java Applet: DT-MRI Processing12.34%
  765M311.92%
  766MouseTracker11.92%
  767MEG Tools11.48%
  768Rodent Brain Extraction Tool11.21%
  769CDF-HC PointSetReg11.08%
  770Caret11.02%
  771UNC Primate Brain Atlas10.92%
  772INCF10.90%
  773MaCH-Admix10.13%
  774MaCH10.11%
  775ShapeComplexAtlas9.721%
  776Distributome9.104%