Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
997526
2
MRIcron
979360
3
BIDScoin
720765
4
ITK-SNAP
468548
5
FCP/INDI PRIVATE SITE
385080
6
IIT Human Brain Atlas (v.5.0)
225344
7
fMRI-CPCA
207200
8
MRIcroGL
205926
9
CONN : functional connectivity toolbox
205625
10
1000 Functional Connectomes Project
184002
11
BrainNet Viewer
120860
12
DTI-TK
97169
13
BXH/XCEDE Tools
90508
14
NIDB - Neuroinformatics Database
87475
15
IBSR
82152
16
BioImage Suite
81053
17
age-ility
80712
18
Multi-Modal MRI Reproducibility Resource
76511
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
73025
20
Solar Eclipse Imaging Genetics tools
68834
21
WFU_PickAtlas
66671
22
JIST: Java Image Science Toolkit
66329
23
BrainFlow
63009
24
GIFTI
54549
25
PANDA: a pipeline tool for diffusion MRI
53360
26
NITRC Computational Environment (NITRC-CE)
51575
27
The Neuro Bureau
51339
28
3T DWI test-retest reliability dataset
47482
29
Functional Imaging BIRN
47200
30
TOADS-CRUISE Brain Segmentation Tools
42236
31
fNIRS Data Analysis Environment
41835
32
Multimodal Visual Consciousness Study Dataset
40333
33
EEGLAB
40072
34
Generalized PPI Toolbox
39377
35
FreeSurfer
37987
36
QuickNII - Serial section aligner to volumetric atlases
36926
37
BrainMap Database
36613
38
Network-Based Statistic (NBS)
35046
39
MIITRA atlas
34130
40
NeuroImaging Analysis Kit (NIAK)
32840
41
UNC 0-1-2 Infant Atlases
31875
42
Brain Biomechanics Imaging Resources
30735
43
Homer2
29591
44
DWI/DTI Quality Control Tool: DTIPrep
27441
45
NeuroDebian
27329
46
TumorSim
27208
47
Anima
26860
48
NYU CSC TestRetest
26693
49
BrainVisa Morphologist extensions
26668
50
Graph Theory GLM (GTG) MATLAB Toolbox
25982
51
XNAT Extras
24866
52
Melbourne Subcortex Atlas
23878
53
CBS High-Res Brain Processing Tools
23639
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
23418
55
4D UNC Neonatal and Infant Cortical Surface Atlases
22881
56
Neuroimaging Made Easy Blog
22487
57
SPHARM-PDM Toolbox
22051
58
SRI24 Atlas: Normal Adult Brain Anatomy
20322
59
BrainMask Volume Processing Tool
19592
60
Data Format Tools
19402
61
Mango
19397
62
Vaa3D and Vaa3D-Neuron
19209
63
Fast Nonlocal Means for MRI denoising
19209
64
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
19030
65
CANDI Neuroimaging Access Point
18937
66
Surf Ice
18853
67
Automatic Registration Toolbox
18613
68
MITK Diffusion
18332
69
Group ICA Toolbox (GIFT and EEGIFT)
17944
70
GRETNA
17610
71
3DSlicerLupusLesionModule
17433
72
Talairach Daemon
17091
73
Subject Order-Independent Group ICA
16883
74
Awake Rat rsfMRI Database
16833
75
Diffusion Toolkit / TrackVis
16650
76
DCP：Diffusion Connectome Pipeline
16609
77
Spatially Constrained Parcellation
16402
78
MRtrix
16355
79
Freesurfer fsaverage
16248
80
3D Slicer
16240
81
ShapePopulationViewer
16188
82
Computational Morphometry Toolkit (CMTK)
16186
83
BrainSuite
16008
84
Hammer And WML Modules for 3D Slicer
15900
85
Human Imaging Database (HID)
15853
86
ENIGMA-DTI pipeline
15357
87
AutoSeg
15179
88
MARS (Multi-Atlas Robust Segmentation)
14538
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14525
90
FSL
14233
91
Brainstorm
13844
92
Artifact Detection Tools (ART)
13555
93
ANDA
13324
94
dcm2nii
13243
95
libminc - Medical Image NetCDF library
12878
96
Nighres
12844
97
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12755
98
NeuroDOT
12602
99
ABSORB for groupwise registration
12591
100
Maps4Mipav (Exploratory JIST)
12568