Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
857715
2
Nilearn
485173
3
ITK-SNAP
408492
4
FCP/INDI PRIVATE SITE
276568
5
1000 Functional Connectomes Project
171105
6
IIT Human Brain Atlas (v.5.0)
149208
7
MRIcroGL
146697
8
CONN : functional connectivity toolbox
145746
9
DTI-TK
87974
10
BrainNet Viewer
83168
11
IBSR
70592
12
Multi-Modal MRI Reproducibility Resource
59161
13
WFU_PickAtlas
58791
14
BioImage Suite
52146
15
age-ility
48222
16
BXH/XCEDE Tools
44082
17
PANDA: a pipeline tool for diffusion MRI
40834
18
EEGLAB
39650
19
Solar Eclipse Imaging Genetics tools
39154
20
The Neuro Bureau
38205
21
JIST: Java Image Science Toolkit
38017
22
FreeSurfer
37842
23
Waxholm Space Atlas of the Sprague Dawley Rat Brain
37489
24
TOADS-CRUISE Brain Segmentation Tools
36042
25
GIFTI
34944
26
fNIRS Data Analysis Environment
32731
27
Functional Imaging BIRN
32450
28
Generalized PPI Toolbox
30463
29
NITRC Computational Environment (NITRC-CE)
28550
30
3T DWI test-retest reliability dataset
28033
31
BrainMap Database
24955
32
NIDB - Neuroinformatics Database
23830
33
Homer2
22905
34
BIDScoin
22691
35
NeuroDebian
21357
36
Network-Based Statistic (NBS)
20846
37
fMRI-CPCA
20629
38
Anima
20606
39
BrainVisa Morphologist extensions
20359
40
NYU CSC TestRetest
19735
41
UNC 0-1-2 Infant Atlases
18180
42
Mango
17359
43
MITK Diffusion
17080
44
XNAT Extras
17021
45
Neuroimaging Made Easy Blog
16072
46
Automatic Registration Toolbox
15339
47
GRETNA
15066
48
3D Slicer
14461
49
Data Format Tools
14451
50
Surf Ice
14209
51
Freesurfer fsaverage
13885
52
Talairach Daemon
13832
53
Spatially Constrained Parcellation
13752
54
QuickNII - Serial section aligner to volumetric atlases
13695
55
Diffusion Toolkit / TrackVis
13658
56
Brainstorm
13488
57
Brain Biomechanics Imaging Resources
13432
58
Vaa3D and Vaa3D-Neuron
13403
59
SRI24 Atlas: Normal Adult Brain Anatomy
12723
60
DCP：Diffusion Connectome Pipeline
12567
61
dcm2nii
12536
62
libminc - Medical Image NetCDF library
12509
63
CBS High-Res Brain Processing Tools
12488
64
Group ICA Toolbox (GIFT and EEGIFT)
12288
65
MRtrix
12267
66
Melbourne Subcortex Atlas
12235
67
BrainMask Volume Processing Tool
11805
68
Computational Morphometry Toolkit (CMTK)
11566
69
FSL
11404
70
Artifact Detection Tools (ART)
11368
71
3DSlicerLupusLesionModule
11359
72
DWI/DTI Quality Control Tool: DTIPrep
11102
73
CANDI Neuroimaging Access Point
11014
74
Subject Order-Independent Group ICA
10912
75
BrainSuite
10846
76
TumorSim
10810
77
Human Imaging Database (HID)
10794
78
2008 MICCAI MS Lesion Segmentation Challenge
10785
79
BrainVISA
10770
80
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
10434
81
Hammer And WML Modules for 3D Slicer
10376
82
NeuroImaging Analysis Kit (NIAK)
10214
83
NODDI Matlab Toolbox
9689
84
SPM for fNIRS toolbox
9669
85
Source Information Flow Toolbox
9639
86
Diffusional Kurtosis Estimator
9513
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
9289
88
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
9286
89
4D UNC Neonatal and Infant Cortical Surface Atlases
9232
90
NIRS-KIT: A MATLAB toolbox for both task and resting-state fNIRS data analysis
9110
91
NIfTI
9018
92
CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)
8890
93
ENIGMA-DTI pipeline
8762
94
Task Independent Fluctuations Discussion
8564
95
SPHARM-PDM Toolbox
8520
96
MARS (Multi-Atlas Robust Segmentation)
8279
97
Robust Brain Extraction (ROBEX)
8173
98
Awake Rat rsfMRI Database
8104
99
iBEAT
7944
100
Center for Functional Neuroimaging Tech
7690