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Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC Read-Only. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC Read-Only.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.67%
  21000 Functional Connectomes Project97.05%
  3ITK-SNAP95.78%
  4BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6CBICA: CLASSIC93.29%
  7rapidtide92.34%
  8MRIcroGL92.10%
  9Rosetta Bit90.88%
  10DTI-TK90.73%
  11Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography89.19%
  12Functional Mixed Processes Models89.05%
  13Multi-Modal MRI Reproducibility Resource88.44%
  14PANDA: a pipeline tool for diffusion MRI88.43%
  15MPScope88.22%
  16TOADS-CRUISE Brain Segmentation Tools86.71%
  17BrainNet Viewer86.47%
  18Hadoop for data colocation85.39%
  19CONN : functional connectivity toolbox85.05%
  20JIST: Java Image Science Toolkit85.02%
  21CBICA: PREDICT84.68%
  22Kurtosis Imaging Network - KIN84.52%
  23BRAINSTestData84.43%
  24CBICA: Brain Tumor Modeling - Coupled Solver84.40%
  25ITools Resourceome84.16%
  26CBICA: Brain Anatomy Simulator83.98%
  27Functional Imaging BIRN83.98%
  28Local Label Learning (LLL) Segmentation83.13%
  29HD Neuro-Informatics83.02%
  30Infant Macaque MRI And DTI Templates82.26%
  31Lumina LP- 400 Response System82.21%
  32Philips Users Community82.17%
  33HERMES81.06%
  34NUTMEG80.78%
  35NeuroDebian80.52%
  36ODIN80.52%
  37Stochastic Tractography System80.43%
  38TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA80.31%
  39Prospective Acquisition CorrEction (PACE) Resting State EPI data80.25%
  40Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  41Vaa3D and Vaa3D-Neuron79.86%
  42fMRIstat79.79%
  43Bayesian longitudinal low-rank regression79.68%
  44map3d79.67%
  45Turbo-BrainVoyager79.64%
  46Solar Eclipse Imaging Genetics tools79.31%
  47DSI Studio79.21%
  48University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software79.00%
  49Seg3D78.68%
  50Ogles - OpenGL/OIV Stereotactic Tool78.64%
  51UNC/Utah NAMIC DTI Fiber Analysis Framework78.64%
  52Umeå Brain Arteries78.64%
  533T DWI test-retest reliability dataset78.64%
  54iView X MRI-LR - Eye Tracking for fMRI78.64%
  55WFU_PickAtlas78.59%
  56L-Neuron78.49%
  57XCEDE Schema78.35%
  58MITK Diffusion78.34%
  59BioSig78.08%
  60MASIMatlab77.87%
  61Curry 777.81%
  62GazeReader77.81%
  63Functional ROI Atlas77.78%
  64BluePyOpt77.70%
  65SurfStat77.60%
  66CBRAIN77.49%
  67GPU based affine registration77.46%
  68FieldTrip77.34%
  69Biomag Discussion Group on Yahoo77.32%
  70VALiDATe29 squirrel monkey brain atlas77.21%
  71XNBC77.14%
  72GIFTI77.11%
  73Brede Toolbox77.01%
  74EEG Toolbox76.93%
  75HCP Harvard/MGH-UCLA76.85%
  76EEProbe76.84%
  77epi-example-dicom76.63%
  78E-Prime Extensions for fMRI76.62%
  79National Database for Autism Research76.52%
  80TurtleSeg76.48%
  81MindSeer76.42%
  82Group Sparse Canonical Correlation Analysis76.27%
  83COINS76.26%
  84EONS76.25%
  85Insight Toolkit76.17%
  86Spatial Analysis 3D76.15%
  87ASA - Advanced Source Analysis76.11%
  88NIPY Diffusion Imaging Analysis76.10%
  89Brain Products' EEG/fMRI Hardware76.05%
  90PING75.85%
  91Cytoseg75.83%
  92HCP WU-Minn Consortium75.77%
  93In vivo MEMRI-based Rat Brain Atlas75.71%
  94NICE-SIGN75.68%
  95MNI Macaque Atlases75.65%
  96GesTr75.60%
  97cmrep75.59%
  98ParaView75.52%
  99PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  100EEGLAB75.43%
  101Framework for Open Programmatic Access75.38%
  102LIBEEP75.38%
  103NIPY File IO75.18%
  104Micro-Manager75.17%
  105CBICA: PORTR75.13%
  106A robust method for correcting partial volume effect in ASL data75.12%
  107NFT: Neuroelectromag Forward Modeling75.04%
  108CBICA: ODVBA74.97%
  109Brainsight74.90%
  110Faceted Search Based Ontology Visualizer74.89%
  111INCF Neuroimaging Data Sharing74.89%
  112Net Station74.81%
  113UCLA Multimodal Connectivity Database74.77%
  114FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  115brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  116EEGVIS74.66%
  117ProbabilisticBiasCorrection74.60%
  118I/OWA 374.57%
  119dtiBrainScope74.54%
  120DICOM_UploadGUI74.52%
  121Connectome File Format (CFF)74.48%
  122APERTURE74.44%
  123mask_explorer74.44%
  124Bisque74.41%
  125BrainLiner.jp74.34%
  126Advanced Normalization Tools74.32%
  127nitime74.27%
  128INVIZIAN74.26%
  129Anatomist74.21%
  130NordicNeuroLab74.14%
  131XCEDE Schema74.09%
  132Presentation74.05%
  133connectir74.03%
  134NC-IGT Fast Imaging Library74.00%
  135Age Related Atrophy Dataset74.00%
  136ERPLAB73.92%
  137VIEWPixx73.91%
  138CANDI Share: Schizophrenia Bulletin 200873.91%
  139Triangle BioSystems73.89%
  140BrainMaps.org73.86%
  141MINC - Medical Image NetCDF73.83%
  142Pydicom73.82%
  143The fMRI Data Center73.82%
  144PySurfer73.76%
  145Surf Ice73.55%
  146XNAT Extras73.53%
  147Statistics Online Computational Resource73.45%
  148NITRC Community73.42%
  149Neuroimaging Made Easy Blog73.40%
  150TARQUIN MRS analysis package73.40%
  151NIRx NIRS Neuroimaging73.39%
  152CBICA: Datasets73.38%
  153PyNIfTI73.36%
  154fMRI-CPCA73.30%
  155Generalized PPI Toolbox73.25%
  156COGNISION (TM) System73.25%
  157OpenElectrophy73.22%
  158NIPY Community73.20%
  159NeuroScope72.95%
  160ASL data processing tool box72.94%
  161MagPro Magnetic Stimulator (TMS)72.94%
  162Lipsia72.87%
  163MedINRIA72.87%
  164dcm2nii72.82%
  165Mouse Connectome Project (MCP)72.79%
  166Fiber Tracking Tool72.78%
  167Fiber-tracking based on Finsler distance72.78%
  168SumsDB Database72.73%
  169Fiber Optic Button Response System72.72%
  170CUDA accelerated spherical model M/EEG72.66%
  171False Discovery Rate Weighted72.64%
  172DATAPixx72.63%
  173OpenFMRI72.62%
  174DONE: Detection of Outlier NEurons72.55%
  175ArtRepair for robust fMRI72.45%
  176WhiteText - annotated neuroscience text72.44%
  177NIPY Structural and Functional Analysis72.36%
  178CLEAVE: Large Data Set ANOVA72.21%
  179scikit-learn72.17%
  180Mag Design and Engineering72.10%
  181Working Memory Trainer72.06%
  182ENIGMA-DTI pipeline72.03%
  183PPMI72.00%
  184SFMProject71.92%
  185vuTools71.88%
  186Hitachi Optical Topography System71.88%
  187BRAINSConstellationDetector71.85%
  188Computational Morphometry Toolkit (CMTK)71.65%
  189MRI Digital Projection System71.59%
  190ShapeViewer71.52%
  191Normative Independent Component Analysis71.48%
  192Network-Based Statistic (NBS)71.48%
  193LDDMM71.43%
  194fNIR Devices71.38%
  195OpenMEEG71.38%
  196Data Format Tools71.30%
  197TORTOISE71.25%
  198NeuroElf71.23%
  199ADNI71.16%
  2004D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  201Nilearn71.04%
  202COST71.02%
  203NeuroSynth70.83%
  204BioImage Suite70.78%
  205GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity70.77%
  206Viking Viewer for Connectomics70.74%
  207SR Research EyeLink Eye Trackers70.67%
  208LONI Provenance Editor70.63%
  209CoCoMac Brain Connectivity Database70.62%
  210MazeSuite70.54%
  211BrainBrowser70.49%
  212Pipeline Neuroimaging VirtualEnvironment70.41%
  213Biomedical Informatics Research Network70.34%
  214Disease State Prediction70.12%
  215Open Connectome Project70.04%
  216Source Information Flow Toolbox69.98%
  217REST: a toolkit for resting-state fMRI69.97%
  218OEI fMRI compatible olfactometer69.96%
  219Journals69.76%
  220Fast Fourier Transform (FFT) JavaLibrary69.75%
  221Laboratory of Neuro Imaging (LONI)69.74%
  222IMOD - 3D Reconstruction and Analysis69.72%
  223BrainVisa Morphologist extensions69.66%
  224Mouse BIRN69.44%
  225BrainGraph Editor 1.0 Beta69.44%
  226LIMO EEG69.17%
  227Center for Computational Biology (CCB)69.15%
  228FADTTSter68.99%
  229BrainVISA68.99%
  230Synchronized Histological Image View Arc68.86%
  231cbiNifti: Matlab/Octave Nifti library68.82%
  232BrainMap Database68.79%
  233Analyze68.78%
  234DPARSF68.68%
  235Textpresso - literature search engine68.67%
  236NeuroshareLibrary68.65%
  237SMAC: Spatial Multi-category Angle-based Classifier68.62%
  238E-Prime 3.068.58%
  239UNC 0-1-2 Infant Atlases68.52%
  240PST MRI Simulator68.50%
  241NCANDA: Data Integration Component68.23%
  242The Neuro Bureau68.20%
  243PsychoPy68.14%
  244CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  245Grantees Meeting for NITRC68.08%
  246Create DWI Atlas67.98%
  247Homer267.72%
  248BrainMagix SPM Viewer67.70%
  249BioMesh3D67.70%
  250Multiscale Weighted Principal Component Regression67.66%
  251NeuroWeb - NeuroImaging Database67.63%
  252NeuriteTracer67.45%
  253MultiTracer version 267.40%
  254dinifti67.32%
  255Low Resolution Brain Electromagnetic Tomography67.25%
  256Waxholm Space Atlas of the Sprague Dawley Rat Brain67.24%
  257N2A67.19%
  258S3DL Sparse Dictionary Learning based MR Image and Lesion Segmentation67.00%
  259Brede Wiki67.00%
  260SCIRun66.94%
  261Rockland Download Link Script66.78%
  262MEGSIM66.69%
  263Mango66.49%
  264NIPY Pipeline and Interfaces66.47%
  265CAMINO-TRACKVIS66.47%
  266HDBIG66.40%
  2673D Slicer66.28%
  268ImageVis3D66.18%
  269BrainMask Volume Processing Tool66.17%
  270Spatially Constrained Parcellation65.95%
  271fMRI Results Comparison Library65.84%
  272Signed Differential Mapping65.59%
  273Books65.58%
  274Group Level Imputation of Statistic Maps65.49%
  275IIT Human Brain Atlas (v.4.1)65.43%
  276Connectome Viewer65.38%
  277SCRalyze65.38%
  278ShapeTools65.31%
  279HFH_DTI_DATA65.30%
  280MRBrainS Evaluation Framework / Challenge65.15%
  281PICASSO skull stripping tool65.14%
  282ExPosition Packages65.09%
  283MRI_CVPR65.08%
  284NIREP64.96%
  285Parkinson's Disease Discovery Database64.60%
  286MARS (Multi-Atlas Robust Segmentation)64.29%
  287Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  288Diffusion Warp64.08%
  289Non-rigid groupwise registration method63.75%
  290Web Interfaces for Multiscale Images63.57%
  291Diffusion Toolkit / TrackVis63.57%
  292MarsBaR region of interest toolbox63.54%
  293Hammer And WML Modules for 3D Slicer63.46%
  294Temporal-lobe.com63.32%
  295NeoSegPipeline63.20%
  296Augmented Reality Mirror63.19%
  297Brain Entropy in space and time (BEst)63.14%
  298FSL extensions63.14%
  299Medical Image Visualization and Analysis63.06%
  300AFNI63.05%
  301fNIRS Data Analysis Environment63.04%
  302CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)63.03%
  303SPM for fNIRS toolbox62.95%
  304Neuroimaging Data Access Group62.68%
  305UNC-Wisconsin Neurodevelopment Rhesus MRI Database62.68%
  306The Grid Code Analysis Toolbox - GridCAT62.64%
  307Talairach Daemon62.61%
  308The Cognitive Atlas62.43%
  309NeuroImaging Analysis Kit (NIAK)62.36%
  310MRtrix62.36%
  311Tractography based on Riemannian geodesics and tensor adjugates62.21%
  312Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration61.88%
  313Mindboggle-101 manually labeled brains61.81%
  314Monte Carlo Simulation Software: tMCimg61.67%
  315Neural ElectroMagnetic Ontologies61.65%
  316PubBrain Database61.64%
  317MoTrak - Head Motion Tracking System61.63%
  318Rodent Cortical Thickness Analysis61.39%
  319CBICA: PHI Estimator61.34%
  320CIGAL61.11%
  321Mesh-based Monte Carlo (MMC)60.92%
  322Waxholm Space Atlas of the C57BL/6J Mouse Brain60.72%
  323MRI denoising60.63%
  324CBICA: MOE60.58%
  325Automatic Registration Toolbox60.46%
  326GRETNA60.42%
  327SPHARM-PDM Toolbox60.39%
  328Neuroinformatics - The Journal60.36%
  329CBICA: DTIDROID60.27%
  330Zebrafish heart segmentation60.21%
  331IBSR60.21%
  332CBICA: GONDOLA60.17%
  333Monte Carlo eXtreme (MCX)60.16%
  334IATR60.11%
  335Anima59.99%
  336Human Imaging Database (HID)59.95%
  337BrainVoyager59.88%
  338Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  339Neoseg59.61%
  340iso2mesh59.41%
  341A Shimadzu to .nirs data converter59.27%
  342Functional Connectivity Community59.20%
  343BRAINSSurfaceStats59.18%
  344Progression Score Model Toolkit59.14%
  345TAPIR58.98%
  346Statistical Methods for Manifold-valued Data58.97%
  347NIRAL Utilities58.71%
  348Scalable Brain Atlas58.15%
  349Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  350pyxnat57.94%
  351Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  352BRAINSTracer57.82%
  353FSL57.77%
  3542008 MICCAI MS Lesion Segmentation Challenge57.37%
  355BRAINSCortex57.21%
  3563DSlicerLupusLesionModule57.18%
  357BiofilmQuant57.09%
  358NITRC Enhanced Services55.84%
  359VectorValuedHistogramNormalizer55.65%
  360BraTumIA (Brain Tumor Image Analysis)55.62%
  361AutoTract55.51%
  362Center for Functional Neuroimaging Tech55.18%
  363Spinal Cord Toolbox55.13%
  364International Imaging Genetics Conference54.88%
  365ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis54.66%
  366ATPP: Automatic Tractography-based Parcellation Pipeline54.48%
  367Draw3D and Meshinator54.46%
  368Group ICA Toolbox (GIFT and EEGIFT)54.37%
  369Subject Order-Independent Group ICA54.27%
  370DTIProcess ToolKit54.23%
  371TumorSim54.05%
  372VMTK in 3D Slicer53.66%
  373NIfTI53.43%
  374MCIC- schizophrenic and matched control data53.00%
  3753d Brain Atlas Reconstructor52.90%
  376BrainVoyager Brain Tutor52.67%
  377Artifact Detection Tools (ART)52.65%
  378C-PAC52.38%
  379ANTsR52.31%
  380STAMP Atlases for Brain Abnormality Detection52.19%
  381Generation R Pediatric MRI Resources52.13%
  382Licensing52.06%
  383SpineSegmentation module for 3DSlicer51.99%
  384EEG human categorization data51.96%
  385LONI Pipeline Environment51.66%
  386MRI Defacer51.53%
  387Diffusional Kurtosis Estimator51.44%
  388Parallel Stochastic Ion Channel Simulator51.43%
  389CBS High-Res Brain Processing Tools51.16%
  390VANDPIRE50.70%
  391BRAINSMush50.66%
  392A probabilistic subcortical atlas for PD50.62%
  393factory_t1_dti50.47%
  394ABSORB for groupwise registration50.44%
  395Lightweight Data Pipeline50.41%
  396CANDI Neuroimaging Access Point50.20%
  397Pipeline system for Octave and Matlab49.99%
  398NYU CSC TestRetest49.89%
  399shapeAnalysisMANCOVA - SPHARM tools49.87%
  400ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  401ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  402Maps4Mipav (Exploratory JIST) 49.28%
  403MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  404Multiple Correlation Function Tool48.96%
  405Epsilon Radial Networks48.81%
  406Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations48.78%
  407Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  408GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  409SIVIC48.42%
  410Magnetic Resonance Angiography Atlas Dataset48.30%
  411Conferences, Workshops and Meetings48.24%
  412MONSTR Multi Contrast Brain Stripping48.12%
  413ANIMA47.79%
  414BXH/XCEDE Tools47.74%
  415UNC CEDARS INFANT ATLAS47.68%
  416GenGen47.52%
  417CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)47.42%
  418Single-subject Resting state fMRI Reproducibility Resource47.35%
  419BRAINSFit47.32%
  420fNIRS Research Database47.26%
  421The Cancer Imaging Archive (TCIA)47.14%
  422Graph Theory GLM (GTG) MATLAB Toolbox47.13%
  423NODDI Matlab Toolbox47.13%
  424FBIRN Image Processing Scripts (FIPS)46.94%
  425Task Independent Fluctuations Discussion46.90%
  426Mixed Effect Model of Genetic-Set and Environment Interaction46.67%
  427SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation46.64%
  428MRI Dataset for Hippocampus Segmentation46.59%
  429BetA-Series COrrelation46.52%
  430Local Manifold Learning for Multi-atlas segmentation46.38%
  431BrainSuite46.09%
  432Simple Medical Imaging Library Interface (SMILI)46.01%
  433AHEAD45.91%
  434FreeSurfer45.79%
  435DWI/DTI Quality Control Tool: DTIPrep45.67%
  436PESTICA & SLOMOCO: physio and motion correction tools45.55%
  437Diffusion MRI @ DKFZ Heidelberg45.52%
  438Wisconsin White Matter Hyperintensities Segmentation Toolbox45.47%
  439Gibbsconnectome45.43%
  440MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data45.11%
  441Statistical Methods for Heterogeneous Neuroimaging Data45.03%
  442Vervet Probabilistic Atlas44.95%
  443Best Practices for Software Development44.91%
  444CutNII - Custom-angle slicer for brain atlas volumes44.89%
  445Spanish Resting State Network44.84%
  446Optseq - fMRI Event Scheduler44.67%
  447NeuroImage Field-of-View Normalization Tool44.45%
  448Bayesian Connectivity Analysis software (BCA)44.44%
  449SLIC: a whole brain parcellation toolbox44.37%
  450Imeka Tractography Service44.35%
  451Robust Brain Extraction (ROBEX)44.12%
  452MATLAB Tutorial on Diffusion Tensor MRI44.07%
  453Phoneme-Syllable Tsinghua University CS&T 201143.96%
  454EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  455In vivo MEMRI-based Mouse Brain Atlas43.68%
  456GIMME (Group Iterative Multiple Model Estimation)43.60%
  457Preprocessed Connectomes Project43.46%
  458QCQP43.44%
  459Human Connectome Project (HCP)43.41%
  460Multicomponent T2 estimation with stimulated echo correction43.38%
  461isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab43.30%
  462S-rep Fitting, Statistics, and Segmentation43.22%
  463SRI24 Atlas: Normal Adult Brain Anatomy43.22%
  464Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function43.09%
  465Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  466Brainnetome DiffusionKit42.56%
  467FMRIpower42.51%
  468BRAINSROIAuto42.50%
  469Graphtools42.47%
  470Mid-Space-Independent Deformable Image Registration42.45%
  471NIDB - Neuroinformatics Database42.27%
  472Brain Connectivity Toolbox42.21%
  473NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space42.09%
  474Brainnetome fMRI toolkit41.98%
  475ShapeComplexityIndex41.87%
  476ABC (Atlas Based Classification)41.78%
  477Atlasing of the basal ganglia41.68%
  478YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  479Brainance DTI Module41.33%
  480HAMMER: Deformable Registration41.11%
  481Longitudinal Multiple Sclerosis Lesion Imaging Archive41.07%
  482Cluster reporter41.03%
  483iBEAT40.95%
  484Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  485SPM40.88%
  486Neurolucida40.86%
  487REX40.58%
  488CBFBIRN40.45%
  489Stereo Investigator40.09%
  4907T Structural MRI scans ATAG39.93%
  491Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)39.79%
  492POS2SPM39.14%
  493DTI Atlas Builder39.04%
  494DTI-TEMPLATE-RHESUS-MACAQUES39.03%
  495Quantitative Diffusion Tools39.01%
  496age-ility38.97%
  497XNAT38.91%
  498ICA Components from Kessler, et al, JAMA Psychiatry 201638.83%
  499SegEditing38.76%
  500INSTAR (Infant Joint Segmentation and Registration)38.74%
  501FiberViewerLight38.56%
  502Functional Analysis of Diffusion Tensor38.54%
  503Fast Nonlocal Means for MRI denoising38.30%
  504VAMCA Cortical Meta-analysis Toolbox37.53%
  505LONI Debabeler37.26%
  506GLIRT37.20%
  507BrainCSI37.02%
  508MRTool36.99%
  509DTI-Reg36.47%
  510The De-identification Toolbox - A data sharing tool for neuroimaging studies36.44%
  511Task-based fMRI atlases35.84%
  512JIST Resources for Algorithm Development35.74%
  513MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis35.57%
  514MriWatcher35.48%
  515Stark Cross-Sectional Aging35.22%
  516JIP fMRI Analysis Toolkit35.10%
  517AutoSeg35.04%
  518AMILab35.01%
  519RapidArt34.88%
  520GTRACT34.29%
  521Computational Anatomy Toolbox - CAT34.26%
  522Emory-UNC Developmental Macaque Structural and DTI Atlases34.06%
  523BrainSolution34.05%
  524MABMIS: Multi-Atlas Based Segmentation33.83%
  525cPPI Toolbox for fMRI33.81%
  526masked ICA (mICA) Toolbox33.21%
  527PyMVPA33.13%
  528CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.33.04%
  529Brainscape32.83%
  530CIFTI Connectivity File Format32.77%
  531DRAMMS Deformable Image Registration Toolbox32.70%
  532DTI denoising32.30%
  533MRIcroS32.12%
  5343-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood31.80%
  535DicomBrowser31.77%
  536DICOMConvert31.72%
  537Diffusion Tractography with Kalman Filter31.71%
  538ShapeWorks31.68%
  539Slicer3 Example Modules31.66%
  540peak_nii31.62%
  541Image Synthesis31.60%
  542High-quality diffusion-weighted imaging of Parkinson's disease31.54%
  543ADJUST - EEG Automatic Artifact Removal31.19%
  544Functional Connectivity Analysis Tool for near-infrared spectroscopy data31.14%
  545GIMIAS30.79%
  546Cerebellar White Matter Atlas30.74%
  547HFH_DTI_TLE_TOOLS30.42%
  548Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  549HAMMER Suite30.27%
  550Templates for In vivo Mouse Brain30.09%
  551MRI Studio30.04%
  552BASH4RfMRI29.93%
  553Program for optimal design of blocked fMRI experiments29.83%
  554GAMBIT29.74%
  555Manually Labeled MRI Brain Scan Database29.73%
  556NPTK29.57%
  557Paradigm29.54%
  558MIPAV29.48%
  559ASHS: Automatic Segmentation of Hippocampal Subfields29.45%
  560DFBIdb29.33%
  561SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  562BRAINSDemonWarp29.19%
  563NITRC GForge Extensions29.00%
  564Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)28.95%
  565NIH Pediatric MRI Data Repository28.87%
  566fMRI Grocer28.81%
  567PHYCAA+: adaptive physiological noise correction for BOLD fMRI28.45%
  568SkullStrippingToolkit28.45%
  569Deformable Template Model for Brain Analysis28.38%
  570Group Information Guided ICA28.29%
  571Clinical Toolbox for SPM28.26%
  572Numerical Fibre Generator (NFG)28.22%
  573NIH-CIDI Lung Segmentation Tool28.17%
  574Hierarchical Functional Networks in Resting State fMRI28.12%
  575Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)28.07%
  576R-package for adaptive DWI analysis28.05%
  577UNC Human Brain Atlas27.89%
  578Colin 3T/7T High-resolution Atlas27.85%
  579HI-SPEED Software Packets27.77%
  580A label fusion using CRF27.43%
  581HistoloZee - 3D histology reconstruction and co-registration with MRI27.26%
  582Brainnetome Atlas Viewer27.19%
  583Corpus Callosum Thickness Profile Analysis Pipeline27.03%
  584SPHARM-MAT27.02%
  585ProCTSeg26.94%
  586Template Image Processing Library26.92%
  587MisterI26.85%
  588DW-MRI registration in FSL26.74%
  589DTI Fiber Tract Statistics26.71%
  590C8: Corpus Callosum Computations26.61%
  591eConnectome26.35%
  592ARCTIC26.31%
  593CleanLine25.99%
  594minc-toolkit25.84%
  5953DMeshMetric25.83%
  596ShapePopulationViewer25.74%
  597MeshValmet: Validation Metric for Meshes25.71%
  598Convert MNI coordinates to or from XYZ25.63%
  599Robust Biological Parametric Mapping25.61%
  600BrainVoyager Viewer25.51%
  601BrainParser25.48%
  602MR Connectome Automated Pipeline (MRCAP)25.42%
  603Gradient Non-linearity Unwarping Tool25.18%
  604Standard Amygdalar fMRI Probe Tasks24.99%
  605WFU_Pipeline24.92%
  6063T MRI data set on structural brain-behavior correlations24.83%
  607LORIS24.52%
  608MIView24.42%
  609MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation24.34%
  610Automatic Segmentation Tool Adapter24.24%
  611GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data24.16%
  612Finsler tractography module for Slicer24.11%
  613Multi-fiber Reconstruction from DW-MRI24.10%
  614FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.04%
  615WFU_BPM23.85%
  616MASI Label Fusion23.84%
  617TetraMetrix23.83%
  618MNE - Minimum Norm Current Estimates23.57%
  619Simulated Diffusion-Weighted Datasets23.45%
  620R-package for adaptive fMRI analysis23.40%
  621SnPM23.24%
  622Functional Regression Analysis of DTI23.20%
  623Morphometry BIRN23.14%
  624B0 and eddy current correction for DTI23.07%
  625Brainstorm22.98%
  626RFT_FDR22.92%
  627aBEAT22.86%
  628Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising22.77%
  629volBrain: online MRI segmentation22.77%
  630Elastic Net-based Parcellation (ENPA)22.61%
  631Diffusion MRI - In-vivo and Phantom Data22.59%
  632Ultra-high field atlas for DBS planning22.46%
  633MGH Neonatal/Pediatric ADC atlases22.43%
  634CCSeg - Corpus Callosum Segmentation22.42%
  635Corpus callosum and brain segmentations from ABIDE database22.37%
  636Inter-Group Registration Toolbox22.30%
  637Spatial Statistical Parametric Mapping22.29%
  638OASIS22.27%
  639JHU Proj. in Applied Medical Imaging22.20%
  640Notion ResearchPACS22.16%
  641Web Game for Collaborative Labeling22.15%
  642POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  643Camino21.88%
  644PICSL Multi-Atlas Segmentation Tool21.87%
  645Iterative dual-regression with sparse prior21.85%
  646DOTS WM tract segmentation21.82%
  647Estimating Functional Brain Network based on Modularity Prior21.77%
  648xjView, a viewing tool for SPM21.77%
  649LONI Inspector21.74%
  650A joint sparse partial correlation method for estimating group functional networks21.30%
  6514D Atlas Construction21.24%
  652Slicer3 Module Rician noise filter21.19%
  653Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data21.10%
  654Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation21.05%
  655VoxBo21.00%
  656SOCK20.87%
  657BTK : Baby Brain Toolkit20.79%
  658NiiStat20.70%
  659cortex20.56%
  660freesurfR20.36%
  661DentalTools20.18%
  662STAPLE19.90%
  663Efficient Permutation Testing19.74%
  664NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.70%
  665MOCA19.60%
  666GAMMA19.58%
  667Generalized Covariance Analysis (gCVA)19.49%
  668Parallel Graph-theoretical Analysis Toolkit19.48%
  669INIA19 Primate Brain Atlas19.27%
  670imcalc: SPM batch image calulator19.18%
  671Fusion ICA Toolbox (FIT)19.13%
  672Hitachi2nirs19.06%
  673ALVIN - Lateral Ventricle Segmentation18.88%
  674Connectome Workbench18.78%
  675Randomized Denoising Autoencoders for Neuroimaging18.77%
  676AURA tools : AUtomated Retinal Analysis tools18.72%
  677Displacement Field Viewer18.71%
  678DW-MRI Random Walk Simulator18.66%
  679Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.58%
  680NIRx2nirs: A NIRx to .nirs data converter18.54%
  681AtlasConstructionToolkit18.54%
  682FIV18.52%
  683BrainNetworkConstructionAnalysisPlatform18.38%
  684Landman NeuroImaging Tools18.21%
  685Penn Hippocampus Atlas18.07%
  686UManitoba-JHU Functionally-Defined Human White Matter Atlas18.05%
  687Resource Ontology Discussion Group18.05%
  688NVM17.82%
  689SINOMO (SIngular NOde MOtifs)17.67%
  690CMFreg17.62%
  691MouseBIRN Atlasing Toolkit (MBAT)17.55%
  692MeshGen - Surface meshes from volumetric segmentation data17.25%
  693CBICA: WMLS (White Matter Lesion Segmentation)17.24%
  694fMRI Classification in R17.15%
  695Diffusion MRI Tool17.05%
  696SPM_SS - fMRI functional localizers17.05%
  697XFSL: An FSL toolbox16.96%
  698BCILAB16.79%
  699Automated Image Registration (AIR)16.67%
  700Brain Segmentation Testing Protocol16.52%
  701resting-state pediatric imaging template16.48%
  702Single-index Varying Coefficient Model for Functional Responses16.45%
  703MIAS Registration Toolkit16.33%
  704ValMap: simple statistical mapping tool15.86%
  705CoCoMac-Paxinos3D viewer15.74%
  706Wavelet-based Image Fusion15.73%
  707Jim15.66%
  708Segmentation Validation Engine15.51%
  709vis: SPM Visualized Statistics toolbox15.48%
  710NeuroLens15.39%
  711MGDM: Multi Geometric Deformable Model15.32%
  712TractoR: Tractography with R15.29%
  713IDeA Lab brain image processing suite15.25%
  714NIRS-SPM15.19%
  715Internet Brain Volume Database (IBVD)15.15%
  716DIAMOND15.11%
  717Using Make for Neuroimaging Workflow: Manual and Examples14.91%
  718DICCCOL predictor (v0.1)14.83%
  719CamBA14.53%
  720Subject Library14.45%
  721MRI Neuroanatomy Labeling Services14.37%
  722Measure Projection Toolbox (MPT)14.34%
  723Brainwaver14.31%
  724Serotonin Transporter HighResolution PET Template14.31%
  725CBICA: COMPARE14.28%
  726The Brain Coactivation Map14.15%
  727Level-set Segmentation for Slicer314.13%
  728LONI De-identification Debablet14.03%
  729Cluster Extent Correction13.99%
  730Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI13.72%
  731NeuroPub Visualizer13.52%
  732BrainDecoderToolbox13.51%
  733Kymata Atlas13.43%
  734Microstructural correlation toolbox13.41%
  735BrainFX13.32%
  736Pythagorean Displacement and Motion Regressors13.17%
  737Wisconsin Cortical Thickness Analysis (CTA) Toolbox13.16%
  738mach2dat13.14%
  739VarTbx – Variability Toolbox13.06%
  740N3 - MINC B0 nonuniformity correction12.85%
  741mach2qtl12.66%
  742gCCA12.63%
  743BrainVision Analyzer12.63%
  744SVV12.48%
  745fanDTasia Java Applet: DT-MRI Processing12.42%
  746Brainvox12.36%
  747MouseTracker12.05%
  748M311.92%
  749MEG Tools11.74%
  750Caret11.02%
  751INCF11.00%
  752UNC Primate Brain Atlas10.99%
  753MaCH10.86%
  754CDF-HC PointSetReg10.23%
  755Rodent Brain Extraction Tool10.13%
  756ShapeComplexAtlas10.08%
  757MaCH-Admix9.549%
  758Distributome9.086%