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Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.69%
  21000 Functional Connectomes Project97.07%
  3ITK-SNAP95.82%
  4BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6CBICA: CLASSIC93.29%
  7MRIcroGL92.35%
  8rapidtide92.34%
  9Rosetta Bit90.88%
  10DTI-TK90.65%
  11Functional Mixed Processes Models89.05%
  12Multi-Modal MRI Reproducibility Resource88.41%
  13PANDA: a pipeline tool for diffusion MRI88.35%
  14MPScope88.22%
  15nonfractal87.06%
  16BrainNet Viewer86.70%
  17TOADS-CRUISE Brain Segmentation Tools86.57%
  18CONN : functional connectivity toolbox85.37%
  19JIST: Java Image Science Toolkit84.86%
  20CBICA: PREDICT84.68%
  21Kurtosis Imaging Network - KIN84.52%
  22CBICA: Brain Tumor Modeling - Coupled Solver84.40%
  23ITools Resourceome84.16%
  24Hadoop for data colocation84.04%
  25Functional Imaging BIRN83.99%
  26CBICA: Brain Anatomy Simulator83.98%
  27Local Label Learning (LLL) Segmentation83.13%
  28HD Neuro-Informatics83.02%
  29Infant Macaque MRI And DTI Templates82.26%
  30Lumina LP- 400 Response System82.21%
  31Philips Users Community82.17%
  32HERMES81.06%
  33NUTMEG80.78%
  34NeuroDebian80.57%
  35ODIN80.52%
  36Stochastic Tractography System80.43%
  37Vaa3D and Vaa3D-Neuron80.24%
  38Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  39fMRIstat79.79%
  40Bayesian longitudinal low-rank regression79.68%
  41map3d79.67%
  42Turbo-BrainVoyager79.64%
  43Solar Eclipse Imaging Genetics tools79.63%
  44DSI Studio79.11%
  45TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA78.97%
  463T DWI test-retest reliability dataset78.95%
  47WFU_PickAtlas78.78%
  48Seg3D78.68%
  49Ogles - OpenGL/OIV Stereotactic Tool78.64%
  50Umeå Brain Arteries78.64%
  51iView X MRI-LR - Eye Tracking for fMRI78.64%
  52MITK Diffusion78.55%
  53L-Neuron78.49%
  54XCEDE Schema78.35%
  55PhysIO Toolbox78.25%
  56MASIMatlab78.21%
  57BioSig78.08%
  58Curry 777.81%
  59GazeReader77.81%
  60Functional ROI Atlas77.78%
  61BluePyOpt77.70%
  62SurfStat77.60%
  63CBRAIN77.49%
  64GPU based affine registration77.46%
  65FieldTrip77.34%
  66Biomag Discussion Group on Yahoo77.32%
  67GIFTI77.27%
  68VALiDATe29 squirrel monkey brain atlas77.21%
  69XNBC77.14%
  70Brede Toolbox77.01%
  71EEG Toolbox76.93%
  72HCP Harvard/MGH-UCLA76.85%
  73EEProbe76.84%
  74epi-example-dicom76.63%
  75E-Prime Extensions for fMRI76.62%
  76National Database for Autism Research76.52%
  77TurtleSeg76.48%
  78MindSeer76.42%
  79COINS76.26%
  80EONS76.25%
  81Insight Toolkit76.17%
  82Spatial Analysis 3D76.15%
  83ASA - Advanced Source Analysis76.11%
  84NIPY Diffusion Imaging Analysis76.10%
  85Brain Products' EEG/fMRI Hardware76.05%
  86Cytoseg75.83%
  87HCP WU-Minn Consortium75.77%
  88In vivo MEMRI-based Rat Brain Atlas75.71%
  89NICE-SIGN75.68%
  90MNI Macaque Atlases75.65%
  91GesTr75.60%
  92cmrep75.59%
  93ParaView75.52%
  94PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  95Framework for Open Programmatic Access75.38%
  96LIBEEP75.38%
  97NIPY File IO75.18%
  98Micro-Manager75.17%
  99CBICA: PORTR75.13%
  100A robust method for correcting partial volume effect in ASL data75.12%
  101NFT: Neuroelectromag Forward Modeling75.04%
  102CBICA: ODVBA74.97%
  103Brainsight74.90%
  104Faceted Search Based Ontology Visualizer74.89%
  105INCF Neuroimaging Data Sharing74.89%
  106Net Station74.81%
  107UCLA Multimodal Connectivity Database74.77%
  108FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  109brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  110EEGVIS74.66%
  111ProbabilisticBiasCorrection74.60%
  112I/OWA 374.57%
  113dtiBrainScope74.54%
  114DICOM_UploadGUI74.52%
  115Connectome File Format (CFF)74.48%
  116APERTURE74.44%
  117mask_explorer74.44%
  118Bisque74.41%
  119BrainLiner.jp74.34%
  120Advanced Normalization Tools74.32%
  121nitime74.27%
  122INVIZIAN74.26%
  123Anatomist74.21%
  124NordicNeuroLab74.14%
  125dcm2nii74.09%
  126XCEDE Schema74.09%
  127Presentation74.05%
  128connectir74.03%
  129NC-IGT Fast Imaging Library74.00%
  130Age Related Atrophy Dataset74.00%
  131ERPLAB73.92%
  132VIEWPixx73.91%
  133CANDI Share: Schizophrenia Bulletin 200873.91%
  134Triangle BioSystems73.89%
  135BrainMaps.org73.86%
  136EEGLAB73.84%
  137Pydicom73.82%
  138The fMRI Data Center73.82%
  139MINC - Medical Image NetCDF73.79%
  140Generalized PPI Toolbox73.77%
  141PySurfer73.76%
  142XNAT Extras73.71%
  143NITRC Community73.55%
  144Statistics Online Computational Resource73.45%
  145fMRI-CPCA73.44%
  146TARQUIN MRS analysis package73.40%
  147NIRx NIRS Neuroimaging73.39%
  148CBICA: Datasets73.38%
  149PyNIfTI73.36%
  150Neuroimaging Made Easy Blog73.35%
  151COGNISION (TM) System73.25%
  152OpenElectrophy73.22%
  153NIPY Community73.20%
  154Surf Ice73.19%
  155PVS_Enhance72.99%
  156NeuroScope72.95%
  157ASL data processing tool box72.94%
  158MagPro Magnetic Stimulator (TMS)72.94%
  159Lipsia72.87%
  160MedINRIA72.87%
  161Mouse Connectome Project (MCP)72.79%
  162Fiber Tracking Tool72.78%
  163Fiber-tracking based on Finsler distance72.78%
  164SumsDB Database72.73%
  165Celeritas: Fiber Optic Response System72.72%
  166Prospective Acquisition CorrEction (PACE) Resting State EPI data72.72%
  167CUDA accelerated spherical model M/EEG72.66%
  168False Discovery Rate Weighted72.64%
  169DATAPixx72.63%
  170OpenFMRI72.62%
  171DONE: Detection of Outlier NEurons72.55%
  172ArtRepair for robust fMRI72.45%
  173WhiteText - annotated neuroscience text72.44%
  174NIPY Structural and Functional Analysis72.36%
  175Nilearn72.25%
  176CLEAVE: Large Data Set ANOVA72.21%
  177scikit-learn72.17%
  178Mag Design and Engineering72.10%
  179Working Memory Trainer72.06%
  180Network-Based Statistic (NBS)72.05%
  181PPMI72.00%
  182SFMProject71.92%
  183vuTools71.88%
  184Hitachi Optical Topography System71.88%
  185BRAINSConstellationDetector71.85%
  186Computational Morphometry Toolkit (CMTK)71.73%
  187Hyperion: MRI Digital Projection System71.59%
  188ShapeViewer71.52%
  189Normative Independent Component Analysis71.48%
  190LDDMM71.43%
  191fNIR Devices71.38%
  192OpenMEEG71.38%
  193TORTOISE71.25%
  194NeuroElf71.23%
  195ADNI71.16%
  1964D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  197BioImage Suite71.10%
  198Data Format Tools71.07%
  199GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity71.06%
  200COST71.02%
  201ENIGMA-DTI pipeline71.00%
  202NeuroSynth70.83%
  203Viking Viewer for Connectomics70.74%
  204SR Research EyeLink Eye Trackers70.67%
  205LONI Provenance Editor70.63%
  206CoCoMac Brain Connectivity Database70.62%
  207MazeSuite70.54%
  208BrainBrowser70.49%
  209Pipeline Neuroimaging VirtualEnvironment70.41%
  210Biomedical Informatics Research Network70.34%
  211Open Connectome Project70.04%
  212REST: a toolkit for resting-state fMRI69.97%
  213OEI fMRI compatible olfactometer69.96%
  214BrainVisa Morphologist extensions69.92%
  215Source Information Flow Toolbox69.80%
  216Journals69.76%
  217Fast Fourier Transform (FFT) JavaLibrary69.75%
  218Laboratory of Neuro Imaging (LONI)69.74%
  219IMOD - 3D Reconstruction and Analysis69.72%
  220Waxholm Space Atlas of the Sprague Dawley Rat Brain69.68%
  221Mouse BIRN69.44%
  222BrainGraph Editor 1.0 Beta69.44%
  223LIMO EEG69.17%
  224Center for Computational Biology (CCB)69.15%
  225FADTTSter68.99%
  226Synchronized Histological Image View Arc68.86%
  227cbiNifti: Matlab/Octave Nifti library68.82%
  228Analyze68.78%
  229BrainVISA68.71%
  230UNC 0-1-2 Infant Atlases68.71%
  231DPARSF68.68%
  232Textpresso - literature search engine68.67%
  233NeuroshareLibrary68.65%
  234SMAC: Spatial Multi-category Angle-based Classifier68.62%
  235BrainMap Database68.60%
  236E-Prime68.58%
  237MRI Simulator68.50%
  238The Neuro Bureau68.29%
  239PsychoPy68.14%
  240CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  241Grantees Meeting for NITRC68.08%
  242Homer268.03%
  243Create DWI Atlas67.98%
  244UNC/Utah NAMIC DTI Fiber Analysis Framework67.77%
  245BrainMagix SPM Viewer67.70%
  246BioMesh3D67.70%
  247Multiscale Weighted Principal Component Regression67.66%
  248NeuroWeb - NeuroImaging Database67.63%
  249NeuriteTracer67.45%
  250MultiTracer version 267.40%
  251dinifti67.32%
  252Low Resolution Brain Electromagnetic Tomography67.25%
  253N2A67.19%
  254S3DL Sparse Dictionary Learning based MR Image and Lesion Segmentation67.00%
  255Brede Wiki67.00%
  256SCIRun66.94%
  257Rockland Download Link Script66.78%
  258MEGSIM66.69%
  259UNC-Wisconsin Neurodevelopment Rhesus MRI Database66.64%
  260Mango66.56%
  261NCANDA: Data Integration Component66.53%
  262HFH_DTI_DATA66.50%
  263NIPY Pipeline and Interfaces66.47%
  264CAMINO-TRACKVIS66.47%
  265HDBIG66.40%
  2663D Slicer66.35%
  267Spatially Constrained Parcellation66.29%
  268Signed Differential Mapping66.19%
  269ImageVis3D66.18%
  270IIT Human Brain Atlas (v.4.1)66.05%
  271BrainMask Volume Processing Tool65.92%
  272fMRI Results Comparison Library65.84%
  273Books65.58%
  274Group Level Imputation of Statistic Maps65.49%
  275Augmented Reality Mirror65.39%
  276Connectome Viewer65.38%
  277SCRalyze65.38%
  278ShapeTools65.31%
  279MRBrainS Evaluation Framework / Challenge65.15%
  280ExPosition Packages65.09%
  281MRI_CVPR65.08%
  282NIREP64.96%
  283Parkinson's Disease Discovery Database64.60%
  284PICASSO skull stripping tool64.35%
  285Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  286Diffusion Warp64.08%
  287MARS (Multi-Atlas Robust Segmentation)64.08%
  288CBICA: Multi Atlas Skull Stripping (MASS)64.06%
  289A 3T probabilistic Locus Coeruleus atlas64.02%
  290fNIRS Data Analysis Environment63.78%
  291Non-rigid groupwise registration method63.75%
  292Diffusion Toolkit / TrackVis63.62%
  293Web Interfaces for Multiscale Images63.57%
  294MarsBaR region of interest toolbox63.54%
  295Temporal-lobe.com63.32%
  296Hammer And WML Modules for 3D Slicer63.27%
  297NeoSegPipeline63.20%
  298Brain Entropy in space and time (BEst)63.14%
  299FSL extensions63.14%
  300Medical Image Visualization and Analysis63.06%
  301AFNI63.05%
  302SPM for fNIRS toolbox62.83%
  303Neuroimaging Data Access Group62.68%
  304The Cognitive Atlas62.43%
  305CBICA: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters (MUSE)62.31%
  306Talairach Daemon62.22%
  307Tractography based on Riemannian geodesics and tensor adjugates62.21%
  308NeuroImaging Analysis Kit (NIAK)61.99%
  309Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration61.88%
  310Mindboggle-101 manually labeled brains61.81%
  311MRtrix61.77%
  312Monte Carlo Simulation Software: tMCimg61.67%
  313Neural ElectroMagnetic Ontologies61.65%
  314PubBrain Database61.64%
  315MoTrak: Head Motion Tracking System61.63%
  316Anima61.57%
  317Rodent Cortical Thickness Analysis61.39%
  318CBICA: PHI Estimator61.34%
  319CIGAL61.11%
  320Mesh-based Monte Carlo (MMC)60.92%
  321DTI Connectome Pipeline60.84%
  322GRETNA60.69%
  323IBSR60.69%
  324MRI denoising60.63%
  325The UNC EBDS neonatal DTI fiber atlas60.63%
  326CBICA: MOE60.58%
  327Neuroinformatics - The Journal60.36%
  328CBICA: DTIDROID60.27%
  329Zebrafish heart segmentation60.21%
  330Automatic Registration Toolbox60.18%
  331CBICA: GONDOLA60.17%
  332Monte Carlo eXtreme (MCX)60.16%
  333IATR60.11%
  334SPHARM-PDM Toolbox59.96%
  335Human Imaging Database (HID)59.84%
  336Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  337Neoseg59.61%
  338Group Sparse Canonical Correlation Analysis59.43%
  339iso2mesh59.41%
  340BrainVoyager59.38%
  341Functional Connectivity Community59.20%
  342BRAINSSurfaceStats59.18%
  343Progression Score Model Toolkit59.14%
  344TAPIR58.98%
  345Statistical Methods for Manifold-valued Data58.97%
  346University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software58.93%
  347NIRAL Utilities58.71%
  348Scalable Brain Atlas58.15%
  349Disease State Prediction58.15%
  350Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  351pyxnat57.94%
  352Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  353FSL57.89%
  3542008 MICCAI MS Lesion Segmentation Challenge57.67%
  355BiofilmQuant57.09%
  356BRAINSTools57.00%
  3573DSlicerLupusLesionModule56.86%
  358NITRC Enhanced Services56.16%
  359VectorValuedHistogramNormalizer55.65%
  360BraTumIA (Brain Tumor Image Analysis)55.62%
  361AutoTract55.51%
  362Center for Functional Neuroimaging Tech55.38%
  363Spinal Cord Toolbox55.13%
  364International Imaging Genetics Conference54.88%
  365Draw3D and Meshinator54.46%
  366Group ICA Toolbox (GIFT and EEGIFT)54.40%
  367TumorSim54.34%
  368DTIProcess ToolKit54.23%
  369Subject Order-Independent Group ICA53.81%
  370VMTK in 3D Slicer53.66%
  371NIfTI53.18%
  372MCIC- schizophrenic and matched control data53.00%
  3733d Brain Atlas Reconstructor52.90%
  374Artifact Detection Tools (ART)52.75%
  375The Grid Code Analysis Toolbox - GridCAT52.57%
  376BrainVoyager Brain Tutor52.48%
  377C-PAC52.38%
  378ANTsR52.31%
  379STAMP Atlases for Brain Abnormality Detection52.19%
  380Licensing52.04%
  381SpineSegmentation module for 3DSlicer51.99%
  382EEG human categorization data51.96%
  383ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis51.96%
  384Diffusional Kurtosis Estimator51.85%
  385CBS High-Res Brain Processing Tools51.84%
  386ToolConnect51.67%
  387Parallel Stochastic Ion Channel Simulator51.43%
  388MRI Defacer51.42%
  389Waxholm Space Atlas of the C57BL/6J Mouse Brain51.38%
  390Gibbsconnectome51.38%
  391LONI Pipeline Environment51.35%
  392VANDPIRE50.79%
  393BRAINSMush50.66%
  394A probabilistic subcortical atlas for PD50.62%
  395factory_t1_dti50.47%
  396Lightweight Data Pipeline50.41%
  397ABSORB for groupwise registration50.30%
  398NYU CSC TestRetest50.26%
  399CANDI Neuroimaging Access Point50.01%
  400shapeAnalysisMANCOVA - SPHARM tools49.87%
  401Pipeline system for Octave and Matlab49.52%
  402ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  403ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  404MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  405Maps4Mipav (Exploratory JIST) 49.04%
  406Multiple Correlation Function Tool48.96%
  407Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations48.88%
  408Epsilon Radial Networks48.81%
  409ATPP: Automatic Tractography-based Parcellation Pipeline48.70%
  410Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  411GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  412SIVIC48.42%
  413Conferences, Workshops and Meetings48.24%
  414ANIMA47.79%
  415UNC CEDARS INFANT ATLAS47.68%
  416NODDI Matlab Toolbox47.56%
  417GenGen47.52%
  418BXH/XCEDE Tools47.52%
  419Single-subject Resting state fMRI Reproducibility Resource47.35%
  420BRAINSFit47.32%
  421fNIRS Research Database47.26%
  422The Cancer Imaging Archive (TCIA)47.14%
  423Graph Theory GLM (GTG) MATLAB Toolbox47.03%
  424Mixed Effect Model of Genetic-Set and Environment Interaction46.67%
  425Task Independent Fluctuations Discussion46.66%
  426SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation46.64%
  427FBIRN Image Processing Scripts (FIPS)46.64%
  428isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab46.60%
  429MRI Dataset for Hippocampus Segmentation46.59%
  430Simple Medical Imaging Library Interface (SMILI)46.58%
  431BrainSuite46.56%
  432DWI/DTI Quality Control Tool: DTIPrep46.46%
  433Local Manifold Learning for Multi-atlas segmentation46.38%
  434BetA-Series COrrelation46.09%
  435FreeSurfer45.97%
  436AHEAD45.91%
  437GIMME (Group Iterative Multiple Model Estimation)45.57%
  438Diffusion MRI @ DKFZ Heidelberg45.52%
  439PESTICA & SLOMOCO: physio and motion correction tools45.40%
  440MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data45.11%
  441Statistical Methods for Heterogeneous Neuroimaging Data45.03%
  442Wisconsin White Matter Hyperintensities Segmentation Toolbox45.03%
  443Generation R Pediatric MRI Resources44.99%
  444Vervet Probabilistic Atlas44.95%
  445Best Practices for Software Development44.91%
  446CutNII - Custom-angle slicer for brain atlas volumes44.89%
  447Spanish Resting State Network44.84%
  448Robust Brain Extraction (ROBEX)44.79%
  449NeuroImage Field-of-View Normalization Tool44.45%
  450Bayesian Connectivity Analysis software (BCA)44.44%
  451CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)44.43%
  452Optseq - fMRI Event Scheduler44.38%
  453Imeka Tractography Service44.35%
  454MATLAB Tutorial on Diffusion Tensor MRI44.01%
  455Phoneme-Syllable Tsinghua University CS&T 201143.96%
  456EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  457In vivo MEMRI-based Mouse Brain Atlas43.68%
  458Magnetic Resonance Angiography Atlas Dataset43.49%
  459Preprocessed Connectomes Project43.46%
  460QCQP43.44%
  461Human Connectome Project (HCP)43.41%
  462Multicomponent T2 estimation with stimulated echo correction43.38%
  463S-rep Fitting, Statistics, and Segmentation43.22%
  464SRI24 Atlas: Normal Adult Brain Anatomy43.10%
  465Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  466SLIC: a whole brain parcellation toolbox42.80%
  467FMRIpower42.75%
  468Brain Connectivity Toolbox42.72%
  469Brainnetome DiffusionKit42.56%
  470BRAINSROIAuto42.50%
  471Graphtools42.47%
  472Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function42.28%
  473NIDB - Neuroinformatics Database42.27%
  474Atlasing of the basal ganglia41.92%
  475ShapeComplexityIndex41.87%
  476ABC (Atlas Based Classification)41.70%
  477Brainnetome fMRI toolkit41.66%
  478MONSTR Multi Contrast Brain Stripping41.50%
  479YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  480Brainance DTI Module41.33%
  481NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space41.30%
  482SPM41.29%
  483iBEAT41.28%
  484HAMMER: Deformable Registration41.15%
  485Longitudinal Multiple Sclerosis Lesion Imaging Archive41.07%
  486Cluster reporter41.03%
  487Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  488REX40.89%
  489Neurolucida40.86%
  490age-ility40.75%
  491CBFBIRN40.45%
  492Stereo Investigator40.09%
  4937T Structural MRI scans ATAG39.54%
  494CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)39.20%
  495POS2SPM39.14%
  496Quantitative Diffusion Tools39.01%
  497Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)38.99%
  498DTI-TEMPLATE-RHESUS-MACAQUES38.90%
  499SegEditing38.76%
  500XNAT38.68%
  501FiberViewerLight38.56%
  502Fast Nonlocal Means for MRI denoising38.30%
  503Functional Analysis of Diffusion Tensor38.26%
  504A Shimadzu to .nirs data converter37.88%
  505VAMCA Cortical Meta-analysis Toolbox37.53%
  506LONI Debabeler37.43%
  507DTI Atlas Builder37.04%
  508BrainCSI37.02%
  509GLIRT36.77%
  510DTI-Reg36.47%
  511Task-based fMRI atlases35.95%
  512JIST Resources for Algorithm Development35.29%
  513Stark Cross-Sectional Aging35.22%
  514masked ICA (mICA) Toolbox35.12%
  515The De-identification Toolbox - A data sharing tool for neuroimaging studies35.02%
  516AMILab35.01%
  517AutoSeg34.95%
  518JIP fMRI Analysis Toolkit34.92%
  519RapidArt34.88%
  520GTRACT34.29%
  521Emory-UNC Developmental Macaque Structural and DTI Atlases34.06%
  522MABMIS: Multi-Atlas Based Segmentation33.87%
  523Mid-Space-Independent Deformable Image Registration33.82%
  524cPPI Toolbox for fMRI33.81%
  525Computational Anatomy Toolbox - CAT33.80%
  526BrainSolution33.80%
  527CIFTI Connectivity File Format33.42%
  528Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography33.27%
  529PyMVPA33.13%
  530Brainscape32.86%
  531CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.32.70%
  532MriWatcher32.69%
  533ICA Components from Kessler, et al, JAMA Psychiatry 201632.68%
  534DRAMMS Deformable Image Registration Toolbox32.66%
  535MRIcroS32.41%
  536DicomBrowser32.39%
  537DTI denoising32.30%
  538MRTool32.26%
  539MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis31.95%
  540ShapeWorks31.68%
  541ADJUST - EEG Automatic Artifact Removal31.63%
  542Image Synthesis31.60%
  5433-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood31.57%
  544Diffusion Tractography with Kalman Filter31.39%
  545Slicer3 Example Modules31.35%
  546High-quality diffusion-weighted imaging of Parkinson's disease31.22%
  547Cerebellar White Matter Atlas31.03%
  548Functional Connectivity Analysis Tool for near-infrared spectroscopy data30.83%
  549GIMIAS30.79%
  550peak_nii30.38%
  551Clinical Toolbox for SPM30.29%
  552Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  553INSTAR (Infant Joint Segmentation and Registration)30.23%
  554ASHS: Automatic Segmentation of Hippocampal Subfields30.03%
  555BASH4RfMRI29.93%
  556Manually Labeled MRI Brain Scan Database29.90%
  557Program for optimal design of blocked fMRI experiments29.83%
  558MRI Studio29.80%
  559HAMMER Suite29.76%
  560GAMBIT29.74%
  561NPTK29.57%
  562Templates for In vivo Mouse Brain29.48%
  563Paradigm29.39%
  564DFBIdb29.33%
  565MIPAV29.25%
  566NITRC GForge Extensions29.23%
  567SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  568Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)28.95%
  569NIH Pediatric MRI Data Repository28.93%
  570SkullStrippingToolkit28.91%
  571fMRI Grocer28.81%
  572DICOMConvert28.59%
  573HFH_DTI_TLE_TOOLS28.50%
  574PHYCAA+: adaptive physiological noise correction for BOLD fMRI28.45%
  575NIH-CIDI Lung Segmentation Tool28.42%
  576Deformable Template Model for Brain Analysis28.38%
  577Group Information Guided ICA28.29%
  578Numerical Fibre Generator (NFG)28.22%
  579Colin 3T/7T High-resolution Atlas27.85%
  580UNC Human Brain Atlas27.71%
  581R-package for adaptive DWI analysis27.70%
  582Hierarchical Functional Networks in Resting State fMRI27.69%
  583HI-SPEED Software Packets27.65%
  584A label fusion using CRF27.43%
  585SPHARM-MAT27.05%
  586ProCTSeg26.94%
  587MisterI26.85%
  588Template Image Processing Library26.75%
  589Brainnetome Atlas Viewer26.63%
  590C8: Corpus Callosum Computations26.61%
  591DW-MRI registration in FSL26.51%
  592Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)26.41%
  593CleanLine26.41%
  594ARCTIC26.36%
  595Corpus Callosum Thickness Profile Analysis Pipeline26.30%
  596eConnectome26.29%
  597DTI Fiber Tract Statistics26.21%
  598Robust Biological Parametric Mapping25.87%
  599minc-toolkit25.84%
  600ShapePopulationViewer25.68%
  601Convert MNI coordinates to or from XYZ25.53%
  602BrainParser25.52%
  603BrainVoyager Viewer25.50%
  604MeshValmet: Validation Metric for Meshes25.47%
  605Simulated Diffusion-Weighted Datasets25.25%
  606Gradient Non-linearity Unwarping Tool25.06%
  6073DMeshMetric24.87%
  608Brainstorm24.72%
  609MR Connectome Automated Pipeline (MRCAP)24.66%
  610WFU_Pipeline24.60%
  611LORIS24.52%
  612HistoloZee - 3D histology reconstruction and co-registration with MRI24.36%
  613GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data24.23%
  614MIView24.23%
  615Multi-fiber Reconstruction from DW-MRI24.16%
  616Finsler tractography module for Slicer24.11%
  617MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation24.11%
  618FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.04%
  619Automatic Segmentation Tool Adapter24.02%
  620WFU_BPM23.77%
  6213T MRI data set on structural brain-behavior correlations23.74%
  622TetraMetrix23.70%
  623MNE - Minimum Norm Current Estimates23.54%
  624MASI Label Fusion23.51%
  625R-package for adaptive fMRI analysis23.51%
  626Diffusion MRI - In-vivo and Phantom Data23.22%
  627aBEAT23.20%
  628Functional Regression Analysis of DTI23.20%
  629Morphometry BIRN23.14%
  630B0 and eddy current correction for DTI23.07%
  631SnPM23.02%
  632RFT_FDR22.92%
  633Standard Amygdalar fMRI Probe Tasks22.85%
  634Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising22.44%
  635OASIS22.42%
  636NiiStat22.36%
  637volBrain: online MRI segmentation22.32%
  638JHU Proj. in Applied Medical Imaging22.20%
  639Web Game for Collaborative Labeling22.06%
  640POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  641Inter-Group Registration Toolbox21.97%
  642CCSeg - Corpus Callosum Segmentation21.93%
  643Spatial Statistical Parametric Mapping21.92%
  644Notion ResearchPACS21.90%
  645Iterative dual-regression with sparse prior21.85%
  646PICSL Multi-Atlas Segmentation Tool21.81%
  647Estimating Functional Brain Network based on Modularity Prior21.77%
  648Camino21.72%
  649LONI Inspector21.51%
  650xjView, a viewing tool for SPM21.44%
  651DOTS WM tract segmentation21.37%
  652MGH Neonatal/Pediatric ADC atlases21.30%
  653Corpus callosum and brain segmentations from ABIDE database21.10%
  654Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data21.10%
  6554D Atlas Construction21.04%
  656Slicer3 Module Rician noise filter21.01%
  657A joint sparse partial correlation method for estimating group functional networks21.00%
  658VoxBo20.83%
  659SOCK20.83%
  660BTK : Baby Brain Toolkit20.79%
  661Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation20.71%
  662cortex20.55%
  663freesurfR20.36%
  664DentalTools20.18%
  665Efficient Permutation Testing20.02%
  666NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.71%
  667STAPLE19.69%
  668GAMMA19.54%
  669Generalized Covariance Analysis (gCVA)19.49%
  670Parallel Graph-theoretical Analysis Toolkit19.35%
  671MOCA19.29%
  672Fusion ICA Toolbox (FIT)19.13%
  673imcalc: SPM batch image calulator19.08%
  674INIA19 Primate Brain Atlas18.98%
  675ALVIN - Lateral Ventricle Segmentation18.88%
  676Elastic Net-based Parcellation (ENPA)18.83%
  677Hitachi2nirs18.78%
  678NIRx2nirs: A NIRx to .nirs data converter18.68%
  679Connectome Workbench18.56%
  680FIV18.48%
  681Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.46%
  682DW-MRI Random Walk Simulator18.28%
  683BrainNetworkConstructionAnalysisPlatform18.24%
  684Landman NeuroImaging Tools18.14%
  685Displacement Field Viewer18.09%
  686Penn Hippocampus Atlas18.08%
  687Resource Ontology Discussion Group17.98%
  688NVM17.87%
  689Randomized Denoising Autoencoders for Neuroimaging17.81%
  690AURA tools : AUtomated Retinal Analysis tools17.74%
  691SINOMO (SIngular NOde MOtifs)17.59%
  692MouseBIRN Atlasing Toolkit (MBAT)17.55%
  693CMFreg17.54%
  694Ultra-high field atlas for DBS planning17.50%
  695AtlasConstructionToolkit17.23%
  696fMRI Classification in R17.15%
  697CBICA: WMLS (White Matter Lesion Segmentation)17.08%
  698SPM_SS - fMRI functional localizers17.02%
  699BCILAB16.92%
  700Brain Segmentation Testing Protocol16.75%
  701Diffusion MRI Tool16.63%
  702Automated Image Registration (AIR)16.62%
  703resting-state pediatric imaging template16.48%
  704XFSL: An FSL toolbox16.42%
  705UManitoba-JHU Functionally-Defined Human White Matter Atlas16.35%
  706MIAS Registration Toolkit16.33%
  707Jim15.88%
  708ValMap: simple statistical mapping tool15.79%
  709CoCoMac-Paxinos3D viewer15.74%
  710Wavelet-based Image Fusion15.63%
  711NeuroLens15.58%
  712Segmentation Validation Engine15.51%
  713vis: SPM Visualized Statistics toolbox15.48%
  714Single-index Varying Coefficient Model for Functional Responses15.43%
  715MeshGen - Surface meshes from volumetric segmentation data15.43%
  716MGDM: Multi Geometric Deformable Model15.32%
  717IDeA Lab brain image processing suite15.31%
  718TractoR: Tractography with R15.25%
  719Internet Brain Volume Database (IBVD)15.25%
  720NIRS-SPM15.19%
  721DIAMOND15.11%
  722DICCCOL predictor (v0.1)14.82%
  723CBICA: COMPARE14.74%
  724CamBA14.53%
  725Brainwaver14.31%
  726Serotonin Transporter HighResolution PET Template14.31%
  727MRI Neuroanatomy Labeling Services14.28%
  728Level-set Segmentation for Slicer314.13%
  729The Brain Coactivation Map14.07%
  730Subject Library14.04%
  731Measure Projection Toolbox (MPT)14.01%
  732Cluster Extent Correction13.99%
  733Using Make for Neuroimaging Workflow: Manual and Examples13.99%
  734LONI De-identification Debablet13.95%
  735Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI13.83%
  736BrainDecoderToolbox13.51%
  737NeuroPub Visualizer13.43%
  738Microstructural correlation toolbox13.41%
  739BrainFX13.30%
  740mach2dat13.14%
  741Pythagorean Displacement and Motion Regressors13.09%
  742Kymata Atlas12.89%
  743N3 - MINC B0 nonuniformity correction12.85%
  744mach2qtl12.72%
  745gCCA12.71%
  746Wisconsin Cortical Thickness Analysis (CTA) Toolbox12.70%
  747VarTbx – Variability Toolbox12.55%
  748SVV12.48%
  749BrainVision Analyzer12.47%
  750fanDTasia Java Applet: DT-MRI Processing12.41%
  751Brainvox12.36%
  752MouseTracker12.01%
  753M311.92%
  754MEG Tools11.74%
  755Rodent Brain Extraction Tool11.05%
  756Caret11.02%
  757INCF10.90%
  758UNC Primate Brain Atlas10.79%
  759MaCH10.61%
  760ShapeComplexAtlas10.06%
  761CDF-HC PointSetReg10.02%
  762MaCH-Admix9.678%
  763Distributome9.123%