Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  11000 Functional Connectomes Project96.95%
  2vis: SPM Visualized Statistics toolbox96.78%
  3MRIcron96.25%
  4Brain Vision Analyzer95.36%
  5BCILAB94.74%
  6DTI-TK94.08%
  7ITK-SNAP93.58%
  8imcalc: SPM batch image calulator93.38%
  9Source Information Flow Toolbox93.34%
  10TOADS-CRUISE Brain Segmentation Tools90.69%
  11SINOMO (SIngular NOde MOtifs)90.45%
  12JIST: Java Image Science Toolkit89.21%
  13Multi-Modal MRI Reproducibility Resource88.66%
  14MPScope88.22%
  15HD Neuro-Informatics87.65%
  16Functional Imaging BIRN86.20%
  17Vaa3D and Vaa3D-Neuron86.19%
  18XNAT Extras84.80%
  19BRAINSTestData84.43%
  20ITools Resourceome84.16%
  21The Neuro Bureau83.49%
  22BPM Accounting for Random Regressors83.47%
  23Lumina LP- 400 Response System82.21%
  24Draw3D and Meshinator81.28%
  25NUTMEG80.78%
  26ODIN80.52%
  27Stochastic Tractography System80.43%
  28GIFTI80.30%
  29BVQXtools80.11%
  30Fluid Registration and Atlas Toolkit79.79%
  31fMRIstat79.79%
  32map3d79.67%
  33NeuroshareLibrary79.50%
  34BrainNet Viewer79.19%
  35FSL extensions79.12%
  36Seg3D78.68%
  37iView X MRI-LR - Eye Tracking for fMRI78.64%
  38NeuroDebian78.57%
  39XCEDE Schema78.35%
  40BioSig78.08%
  413d Brain Atlas Reconstructor77.94%
  42SurfStat77.60%
  43CBRAIN77.49%
  44GPU based affine registration77.46%
  45Solar Eclipse Imaging Genetics tools77.38%
  46FieldTrip77.34%
  47Biomag Discussion Group on Yahoo77.32%
  48Neuroimaging Made Easy Blog77.28%
  49Computational Morphometry Toolkit (CMTK)77.13%
  50BrainMap Database77.09%
  51Brede Toolbox77.01%
  52HCP Harvard/MGH-UCLA76.85%
  53EEProbe76.84%
  54Micro-Manager76.78%
  55E-Prime Extensions for fMRI76.62%
  56fMRI-CPCA76.61%
  57TurtleSeg76.48%
  58MindSeer76.42%
  59Data Format Tools76.28%
  60Insight Toolkit76.17%
  61Spatial Analysis 3D76.15%
  62ASA - Advanced Source Analysis76.11%
  63NIPY Diffusion Imaging Analysis76.10%
  64Cytoseg75.83%
  65HCP WU-Minn Consortium75.77%
  66NICE-SIGN75.68%
  67MNI Macaque Atlases75.65%
  68NIRAL Utilities75.64%
  69GesTr75.60%
  70cmrep75.59%
  71ParaView75.52%
  72Finsler tractography module for Slicer75.49%
  73Framework for Open Programmatic Access75.38%
  74LIBEEP75.38%
  75peak_nii75.31%
  76NIPY File IO75.18%
  77NFT: Neuroelectromag Forward Modeling75.04%
  78Brainsight74.90%
  79Faceted Search Based Ontology Visualizer74.89%
  80INCF Neuroimaging Data Sharing74.89%
  81Net Station74.81%
  82UCLA Multimodal Connectivity Database74.77%
  83Neuroanatomical Labeling Methods74.73%
  84ProbabilisticBiasCorrection74.60%
  85I/OWA 374.57%
  86dtiBrainScope74.54%
  87DICOM_UploadGUI74.52%
  88Connectome File Format (CFF)74.48%
  89Bisque74.41%
  90Advanced Normalization Tools74.32%
  91NIPY Timeseries Analysis74.27%
  92INVIZIAN74.26%
  93Anatomist74.21%
  94NordicNeuroLab74.14%
  95XCEDE Schema74.09%
  96Presentation74.05%
  97connectir74.03%
  98NC-IGT Fast Imaging Library74.00%
  99Fast Nonlocal Means for MRI denoising73.99%
  100LORIS73.94%
  101ERPLAB73.92%
  102BrainMaps.org73.86%
  103EEGLAB73.84%
  104Pydicom73.82%
  105The fMRI Data Center73.82%
  106PySurfer73.76%
  107UNC Human DTI Brain Atlas73.48%
  108Statistics Online Computational Resource73.45%
  109NIRx NIRS Neuroimaging73.39%
  110PyNIfTI73.36%
  111Licensing73.34%
  112PsychoPy73.30%
  113NIPY Community73.20%
  114pyxnat73.13%
  115FiberViewerLight73.06%
  116ASL data processing tool box72.94%
  117MagPro Magnetic Stimulator (TMS)72.94%
  118Lipsia72.87%
  119MedINRIA72.87%
  120PubBrain Database72.81%
  121BrainVoyager QX72.80%
  122Mouse Connectome Project (MCP)72.79%
  123Fiber Tracking Tool72.78%
  124Fiber-tracking based on Finsler distance72.78%
  125SumsDB Database72.73%
  126Fiber Optic Button Response System72.72%
  127DFBIdb72.64%
  128DATAPixx72.63%
  129OpenFMRI72.62%
  130ArtRepair for robust fMRI72.45%
  131WhiteText - annotated neuroscience text72.44%
  132NIPY Structural and Functional Analysis72.36%
  133CLEAVE: Large Data Set ANOVA72.21%
  134scikit-learn72.17%
  135shapeAnalysisMANCOVA - SPHARM tools72.12%
  136Mag Design and Engineering72.10%
  137PPMI72.00%
  138SFMProject71.92%
  139vuTools71.88%
  140Hitachi Optical Topography System71.88%
  141BRAINSConstellationDetector71.85%
  142MRI Digital Projection System71.59%
  143ShapeViewer71.52%
  144CMFreg71.49%
  145LDDMM71.43%
  146fNIR Devices71.38%
  147OpenMEEG71.38%
  148MINC - Medical Image NetCDF71.26%
  149TORTOISE71.25%
  150ADNI71.16%
  151BrainMask Volume Processing Tool71.07%
  152NeuroSynth70.83%
  153Viking Viewer for Connectomics70.74%
  154SR Research EyeLink Eye Trackers70.67%
  155LONI Provenance Editor70.63%
  156CoCoMac Brain Connectivity Database70.62%
  157CAMINO-TRACKVIS70.58%
  158MazeSuite70.54%
  159BrainBrowser70.49%
  160BRAINSImageEval70.47%
  161Pipeline Neuroimaging VirtualEnvironment70.41%
  162Biomedical Informatics Research Network70.34%
  163DSI Studio70.27%
  164DTI-Reg70.16%
  165Disease State Prediction70.12%
  166Open Connectome Project70.04%
  167REST: a toolkit for resting-state fMRI69.97%
  168OEI fMRI compatible olfactometer69.96%
  169Journals69.76%
  170Fast Fourier Transform (FFT) JavaLibrary69.75%
  171Laboratory of Neuro Imaging (LONI)69.74%
  172IMOD - 3D Reconstruction and Analysis69.72%
  173Mouse BIRN69.44%
  174BrainGraph Editor 1.0 Beta69.44%
  175Talairach Daemon69.38%
  176LIMO EEG69.17%
  177Center for Computational Biology (CCB)69.15%
  178ShapeWorks68.90%
  179Synchronized Histological Image View Arc68.86%
  180cbiNifti: Matlab/Octave Nifti library68.82%
  181Analyze68.78%
  1823DSlicerLupusLesionModule68.75%
  183DPARSF68.68%
  184Textpresso - literature search engine68.67%
  185E-Prime 2.068.58%
  186PST MRI Simulator68.50%
  187VR Worlds 268.08%
  188Grantees Meeting for NITRC68.08%
  189Create DWI Atlas67.98%
  190MultiTracer67.97%
  191Human Imaging Database (HID)67.89%
  192MASIMatlab67.88%
  193BioMesh3D67.70%
  194NeuroWeb - NeuroImaging Database67.63%
  195NeuroImaging Analysis Kit (NIAK)67.47%
  196dinifti67.32%
  197Low Resolution Electromag TomogrAphy67.25%
  198Brede Wiki67.00%
  199SCIRun66.94%
  200Maps4Mipav (Exploratory JIST) 66.88%
  201MEGSIM66.69%
  202BioImage Suite66.46%
  203WFU_PickAtlas66.41%
  204ImageVis3D66.18%
  205BrainVISA66.06%
  206UNC 0-1-2 Infant Atlases65.92%
  207AHEAD65.83%
  208BRAINS65.70%
  209Books65.58%
  210NITRC Community65.53%
  211Connectome Viewer65.38%
  212SCRalyze65.38%
  213ShareTools65.31%
  214MASI Label Fusion65.26%
  215DTI-TEMPLATE-RHESUS-MACAQUES65.19%
  216MRI_CVPR65.08%
  217NIREP64.96%
  218Multi-fiber Reconstruction from DW-MRI64.80%
  219Parkinson's Disease Discovery Database64.60%
  220ConnectomeWiki Knowledge Base64.58%
  221MRtrix64.39%
  222Hammer And WML Modules for 3D Slicer64.28%
  223Diffusion Warp64.08%
  224Non-rigid groupwise registration method63.75%
  225NIfTI63.75%
  226Web Interfaces for Multiscale Images63.57%
  227MarsBaR region of interest toolbox63.54%
  228NIPY Pipeline and Interfaces63.51%
  229Temporal-lobe.com63.32%
  230Medical Image Visualization and Analysis63.06%
  231AFNI63.05%
  232GLIRT62.71%
  233TAPIR62.69%
  234Neuroimaging Data Access Group62.68%
  235The Cognitive Atlas62.43%
  236BRAINSCut62.32%
  237AMILab62.14%
  238CANDI Neuroimaging Access Point62.08%
  239Monte Carlo Simulation Software: tMCimg61.67%
  240Neural ElectroMagnetic Ontologies61.65%
  241MoTrak - Head Motion Tracking System61.63%
  242SPM_SS - fMRI functional localizers61.41%
  243BRAINSTracer61.18%
  244CIGAL61.11%
  245Mesh-based Monte Carlo (MMC)60.92%
  246Spatially Constrained Parcellation60.81%
  247MriWatcher60.46%
  248Neuroinformatics - The Journal60.36%
  249Monte Carlo eXtreme (MCX)60.16%
  250IATR60.11%
  251MR Connectome Automated Pipeline (MRCAP)60.10%
  252iso2mesh59.41%
  253FSL59.21%
  254Functional Connectivity Community59.20%
  255BRAINSSurfaceStats59.18%
  256HAMMER Suite58.89%
  257Subject Order-Independent Group ICA58.83%
  258TumorSim58.46%
  259MRI Dataset for Hippocampus Segmentation58.21%
  260Scalable Brain Atlas58.15%
  261SpineSegmentation module for 3DSlicer57.70%
  262BrainVoyager Brain Tutor57.56%
  263BrainVisa Morphology extensions57.35%
  264Diffusion Toolkit / TrackVis57.32%
  265BRAINSCortex57.21%
  266ABSORB for groupwise registration57.18%
  267Task Independent Fluctuations Discussion57.15%
  268SPHARM-PDM Toolbox57.02%
  269BXH/XCEDE Tools56.18%
  270Mango55.97%
  271MRI Defacer55.85%
  272Cluster reporter55.83%
  273GAMBIT55.83%
  274C8: Corpus Callosum Computations55.72%
  275Center for Functional Neuroimaging Tech55.71%
  276VectorValuedHistogramNormalizer55.65%
  277Brain Connectivity Toolbox55.56%
  278CONN - fMRI functional connectivity55.01%
  279iBEAT55.01%
  280VMTK in 3D Slicer53.66%
  2813D Slicer53.62%
  282LONI Pipeline Environment53.53%
  283BrainCSI53.36%
  284Automatic Registration Toolbox52.79%
  285ANTsR52.31%
  286DTIProcess ToolKit52.06%
  287Optseq - fMRI Event Scheduler51.94%
  288HAMMER: Deformable Registration51.76%
  289FBIRN Image Processing Scripts (FIPS)51.47%
  290Tractography with Unscented Kalman Filte51.42%
  291JIST Resources for Algorithm Development50.77%
  292factory_t1_dti50.47%
  293Quantitative Diffusion Tools49.87%
  294A Generalized Form of PPI49.49%
  295Vervet Probabilistic Atlas49.30%
  296Group ICA Toolbox (GIFT and EEGIFT)49.11%
  297CCSeg48.74%
  298Conferences, Workshops and Meetings48.42%
  299BRAINSFit47.99%
  300BrainDecoderToolbox47.73%
  301BRAINSMush47.39%
  302AutoSeg47.23%
  303MABMIS: Multi-Atlas Based Segmentation47.06%
  304Functional Regression Analysis of DTI46.58%
  305MEG Tools46.14%
  306DTI Fiber Tract Statistics46.07%
  307SRI24 Atlas: Normal Adult Brain Anatomy45.94%
  308VAMCA Cortical Meta-analysis Toolbox45.72%
  309ABC (Atlas Based Classification)45.57%
  310JIP fMRI Analysis Toolkit45.25%
  311Best Practices for Software Development44.91%
  312Spanish Resting State Network44.84%
  313QCQP43.44%
  314Human Connectome Project (HCP)43.41%
  315PyMVPA43.36%
  316Measure Projection Toolbox (MPT)42.97%
  317Functional Analysis of Diffusion Tensor42.94%
  318Pipeline system for Octave and Matlab42.91%
  319BRAINSROIAuto42.50%
  320MATLAB Tutorial on Diffusion Tensor MRI42.36%
  321XNAT41.96%
  322IBSR41.05%
  323FMRIpower40.78%
  324Slicer3 Example Modules40.12%
  325iBrain™ analysis toolbox for SPM39.69%
  326Brainscape39.05%
  327iBrain™37.71%
  328HI-SPEED Software Packets37.64%
  329REX37.47%
  330MIPAV37.22%
  331DWI/DTI Quality Control Tool: DTIPrep37.21%
  332BrainParser37.01%
  333BrainSolution36.67%
  334NYU CSC TestRetest36.19%
  335Artifact Detection Tools (ART)36.18%
  336BRAINSDemonWarp36.16%
  337resting-state pediatric imaging template36.15%
  338NPTK35.99%
  339GTRACT35.38%
  340MRI Studio35.34%
  341M335.32%
  342LONI Debabeler35.18%
  343ALVIN - Lateral Ventricle Segmentation35.13%
  344RapidArt34.88%
  345CIFTI Connectivity File Format34.47%
  346GAMMA34.08%
  347MIView33.87%
  348PESTICA fMRI Physio Detection/Correction33.69%
  349SnPM33.63%
  350xjView, a viewing tool for SPM33.36%
  351Template Image Processing Library33.34%
  352BrainSuite33.18%
  353Web Game for Collaborative Labeling32.86%
  354ARCTIC32.76%
  355SPHARM-MAT32.60%
  356R-package for adaptive DWI analysis32.47%
  357NIH Pediatric MRI Data Repository31.99%
  358Paradigm31.71%
  359SPM30.94%
  360TetraMetrix30.60%
  361RFT_FDR30.58%
  362WFU_Pipeline30.45%
  363Numerical Fibre Generator (NFG)29.94%
  364BASH4RfMRI29.93%
  365IIT2 DTI Human Brain Template29.82%
  366eConnectome29.01%
  367UNC Human Brain Atlas28.60%
  368Convert MNI coordinates to or from XYZ28.53%
  369Robust Biological Parametric Mapping28.36%
  370B0 and eddy current correction for DTI28.21%
  371Subject Library28.09%
  372Brain Segmentation Testing Protocol27.90%
  373MeshValmet: Validation Metric for Meshes27.83%
  374Microstructural correlation toolbox27.62%
  375GIMIAS27.58%
  376DOTS27.53%
  377Automatic Segmentation Tool Adapter27.47%
  378Slicer3 Module Rician noise filter27.28%
  379OASIS27.27%
  380WFU_BPM27.26%
  381VoxBo27.01%
  382POLGUI- Matlab GUI for Polhemus Fastrak 26.81%
  383MNE - Minimum Norm Current Estimates26.80%
  384Penn Hippocampus Atlas26.12%
  385Generalized Covariance Analysis (gCVA)25.03%
  386DicomBrowser24.97%
  387BrainVoyager Viewer24.93%
  388Gradient Non-linearity Unwarping Tool24.89%
  389BrainImageJava24.71%
  390fMRI Classification in R24.39%
  391Camino24.31%
  392Automated Image Registration (AIR)24.01%
  393STAPLE23.86%
  394Mindboggle: automated brain labeling23.72%
  395DW-MRI Random Walk Simulator23.54%
  396LONI Inspector23.41%
  397FreeSurfer23.39%
  3983D Interactive Chemical Shift Imaging23.33%
  399Morphometry BIRN23.14%
  400Resource Ontology Discussion Group22.88%
  401Segmentation of Hippocampus Subfields22.39%
  402JHU Proj. in Applied Medical Imaging22.20%
  403Brainstorm21.94%
  404DIAMOND21.42%
  405FIV21.16%
  406R-package for adaptive fMRI analysis21.11%
  407Brain lesion segmentation tool using SVM20.65%
  408Landman NeuroImaging Tools20.31%
  409iBrain™ Laterality Toolbox20.09%
  410NITRC GForge Extensions19.73%
  411TractoR: Tractography with R19.49%
  412Cluster Extent Correction19.27%
  413NVM19.24%
  414Fusion ICA Toolbox (FIT)19.13%
  415COMPARE19.02%
  416IDeA Lab brain image processing suite18.18%
  417Wavelet-based Image Fusion17.96%
  418ValMap: simple statistical mapping tool17.95%
  419CoCoMac-Paxinos3D viewer17.94%
  420MouseBIRN Atlasing Toolkit (MBAT)17.89%
  421Segmentation Validation Engine17.14%
  422NeuroLens16.63%
  423fanDTasia Java Applet: DT-MRI Processing16.44%
  424Internet Brain Volume Database (IBVD)16.26%
  425Brainwaver16.19%
  426CamBA16.15%
  427Jim15.68%
  428UNC Primate Brain Atlas15.67%
  429Level-set Segmentation for Slicer315.56%
  430Brainvox15.33%
  431LONI De-identification Debablet15.11%
  432BrainFX14.61%
  433NeuroPub Visualizer14.43%
  434SVV14.13%
  435MouseTracker12.57%
  436Caret12.42%
  437INCF12.24%
  438N3 - MINC B0 nonuniformity correction12.18%
  439Distributome10.63%