Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
966808
2
Nilearn
927525
3
BIDScoin
630620
4
ITK-SNAP
464234
5
FCP/INDI PRIVATE SITE
379293
6
IIT Human Brain Atlas (v.5.0)
219261
7
fMRI-CPCA
206091
8
MRIcroGL
201867
9
CONN : functional connectivity toolbox
198266
10
1000 Functional Connectomes Project
183225
11
BrainNet Viewer
116487
12
DTI-TK
96291
13
BXH/XCEDE Tools
83349
14
IBSR
81506
15
NIDB - Neuroinformatics Database
80185
16
BioImage Suite
79211
17
age-ility
77542
18
Multi-Modal MRI Reproducibility Resource
75257
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
70202
20
WFU_PickAtlas
66346
21
Solar Eclipse Imaging Genetics tools
64925
22
JIST: Java Image Science Toolkit
63051
23
BrainFlow
58828
24
GIFTI
52273
25
PANDA: a pipeline tool for diffusion MRI
51875
26
The Neuro Bureau
50273
27
NITRC Computational Environment (NITRC-CE)
48390
28
Functional Imaging BIRN
45991
29
3T DWI test-retest reliability dataset
45756
30
TOADS-CRUISE Brain Segmentation Tools
41280
31
fNIRS Data Analysis Environment
41111
32
EEGLAB
40056
33
Generalized PPI Toolbox
38053
34
FreeSurfer
37986
35
Multimodal Visual Consciousness Study Dataset
37713
36
BrainMap Database
35652
37
QuickNII - Serial section aligner to volumetric atlases
35306
38
Network-Based Statistic (NBS)
33555
39
MIITRA atlas
31891
40
NeuroImaging Analysis Kit (NIAK)
31311
41
UNC 0-1-2 Infant Atlases
30674
42
Brain Biomechanics Imaging Resources
29028
43
Homer2
28883
44
NeuroDebian
26825
45
Anima
26543
46
DWI/DTI Quality Control Tool: DTIPrep
26259
47
NYU CSC TestRetest
26145
48
BrainVisa Morphologist extensions
26080
49
TumorSim
25819
50
XNAT Extras
24278
51
Graph Theory GLM (GTG) MATLAB Toolbox
23463
52
Melbourne Subcortex Atlas
22228
53
CBS High-Res Brain Processing Tools
22194
54
Neuroimaging Made Easy Blog
21851
55
4D UNC Neonatal and Infant Cortical Surface Atlases
21594
56
SPHARM-PDM Toolbox
21203
57
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
21197
58
Mango
19252
59
SRI24 Atlas: Normal Adult Brain Anatomy
19075
60
Data Format Tools
18862
61
Vaa3D and Vaa3D-Neuron
18668
62
Fast Nonlocal Means for MRI denoising
18578
63
Surf Ice
18560
64
Automatic Registration Toolbox
18399
65
BrainMask Volume Processing Tool
18340
66
MITK Diffusion
18293
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
18103
68
CANDI Neuroimaging Access Point
17948
69
GRETNA
17480
70
Group ICA Toolbox (GIFT and EEGIFT)
17371
71
Talairach Daemon
16815
72
3DSlicerLupusLesionModule
16618
73
Diffusion Toolkit / TrackVis
16421
74
Subject Order-Independent Group ICA
16341
75
3D Slicer
16184
76
Spatially Constrained Parcellation
16164
77
DCP：Diffusion Connectome Pipeline
16059
78
Awake Rat rsfMRI Database
16029
79
Computational Morphometry Toolkit (CMTK)
15817
80
Freesurfer fsaverage
15816
81
BrainSuite
15623
82
Human Imaging Database (HID)
15297
83
ShapePopulationViewer
15135
84
MRtrix
15049
85
Hammer And WML Modules for 3D Slicer
14896
86
ENIGMA-DTI pipeline
14543
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14122
88
FSL
13973
89
MARS (Multi-Atlas Robust Segmentation)
13934
90
AutoSeg
13912
91
Brainstorm
13841
92
dcm2nii
13207
93
Artifact Detection Tools (ART)
13186
94
libminc - Medical Image NetCDF library
12864
95
Nighres
12483
96
ABSORB for groupwise registration
12153
97
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12126
98
NIfTI
12107
99
Maps4Mipav (Exploratory JIST)
12033
100
Task Independent Fluctuations Discussion
12004