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help > 2nd-level analysis
Jun 10, 2015 03:06 PM | Ben Xu - NIH
2nd-level analysis
Hi,
I have two groups (exp and control) of resting state fMRI and each group has two conditions (pre and post intervention). I'd like to look at group x condition interaction at the 2nd-level analysis with one seed ROI. Here are my questions:
1. How do I set up the contrast at the 2nd level analysis? Is something like the following correct?
I selected "See-to_voxel" analysis. For "Between-subjects contrast" [1 -1], "Between-conditions contrast" [-1 1], and "Between-sources contrast" [1]
2. Is it possible to do some of the 2nd-level analyses in SPM8 or SPM12? If it is what kind of the 1st-level analysis files I should use?
3. This question is related to Question 2. There are several different types of output files (listed below) after the 1st-level analysis. What are these files? Where can I find the descriptions of these output files?
- BETA_*_source.nii
- corr_*_source.nii
- p_corr_*_source.nii
- pFDR_corr_*_source.nii
- Se_Subject*_Condition001.nii
Se_Subject*_Condition002.nii
Can I use any of these output files for 2nd-level contrasts in SPM?
Thanks much for your help.
Ben
I have two groups (exp and control) of resting state fMRI and each group has two conditions (pre and post intervention). I'd like to look at group x condition interaction at the 2nd-level analysis with one seed ROI. Here are my questions:
1. How do I set up the contrast at the 2nd level analysis? Is something like the following correct?
I selected "See-to_voxel" analysis. For "Between-subjects contrast" [1 -1], "Between-conditions contrast" [-1 1], and "Between-sources contrast" [1]
2. Is it possible to do some of the 2nd-level analyses in SPM8 or SPM12? If it is what kind of the 1st-level analysis files I should use?
3. This question is related to Question 2. There are several different types of output files (listed below) after the 1st-level analysis. What are these files? Where can I find the descriptions of these output files?
- BETA_*_source.nii
- corr_*_source.nii
- p_corr_*_source.nii
- pFDR_corr_*_source.nii
- Se_Subject*_Condition001.nii
Se_Subject*_Condition002.nii
Can I use any of these output files for 2nd-level contrasts in SPM?
Thanks much for your help.
Ben
Threaded View
| Title | Author | Date |
|---|---|---|
| Ben Xu | Jun 10, 2015 | |
| Alfonso Nieto-Castanon | Jun 11, 2015 | |
| Ben Xu | Jun 12, 2015 | |
| Alfonso Nieto-Castanon | Jun 12, 2015 | |
| Noah Philip | Jun 12, 2015 | |
| Alfonso Nieto-Castanon | Jun 12, 2015 | |
| Noah Philip | Jun 12, 2015 | |
| Ben Xu | Jun 15, 2015 | |
