We too would be interested in setting the threshold and erosion levels for CSF and WM separately. We require slightly more lenient settings for CSF in our paediatric dataset with relatively large voxel size; white matter is fine with default settings.

Will this patch (and any other patches distributed through this forum since the release of 15.g) be included in the next release of CONN? We want to start processing the datasets soon, but for the purpose of replication & reproducibility we'd prefer to cite an official release of CONN rather than having to mention all the separate patches applied to CONN 15.g.