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user-forum > RE: Stereotaxic coordinates
Mar 12, 2020 06:03 PM | Eszter Agnes Papp
RE: Stereotaxic coordinates
Dear Marc,
I have done a landmark-based affine registration between the Waxholm Space T2*-weighted MRI template and the high resolution rat skull CT provided by the DigiMorph Library at http://digimorph.org/specimens/Rattus_norvegicus/, and found the following voxel coordinates for the interaural line:
IAL Right: CT(792,546,1298) WHS(447,331,609)
IAL Left: CT(189,515,1291) WHS(34,324,626)
Please note that this is based on a linear transformation between the two volumes, with its limitations regarding precision. Also, some differences may exist between animals (no strain is specified on DigiMorph). Still, I hope that it gives you a starting point.
We plan to export the transformed version of the CT and share it here on NITRC, but this will take some time as currently we have a lockdown at the university due to COVID-19. It may be faster to take the CT yourself and work with it further, eventually create a non-linear alignment. If you do so, it would be great if you could share the end result as this would be helpful for many people.
All the best,
Eszter
I have done a landmark-based affine registration between the Waxholm Space T2*-weighted MRI template and the high resolution rat skull CT provided by the DigiMorph Library at http://digimorph.org/specimens/Rattus_norvegicus/, and found the following voxel coordinates for the interaural line:
IAL Right: CT(792,546,1298) WHS(447,331,609)
IAL Left: CT(189,515,1291) WHS(34,324,626)
Please note that this is based on a linear transformation between the two volumes, with its limitations regarding precision. Also, some differences may exist between animals (no strain is specified on DigiMorph). Still, I hope that it gives you a starting point.
We plan to export the transformed version of the CT and share it here on NITRC, but this will take some time as currently we have a lockdown at the university due to COVID-19. It may be faster to take the CT yourself and work with it further, eventually create a non-linear alignment. If you do so, it would be great if you could share the end result as this would be helpful for many people.
All the best,
Eszter
Threaded View
Title | Author | Date |
---|---|---|
Marc Lalancette | Mar 2, 2020 | |
Baptiste Heiles | Nov 2, 2020 | |
Eszter Agnes Papp | Mar 5, 2020 | |
Marc Lalancette | Mar 5, 2020 | |
Eszter Agnes Papp | Mar 12, 2020 | |
Marc Lalancette | Mar 12, 2020 | |