Hello Marc and Eszter,

I see that we are running into similar problems.

I have a question about the Bregma coordinates included in the document on the NITRC repository. It says that the Bregma line should have the coordinate Y=653. I have looked at that specific slice on the Atlas v3 and the Atlas v2 and they look similar. However, on the scalable brain atlas website, the coordinate Y seem to be more in the 610-620 range which leads to a significant difference! Which one to trust then? Also, it could be useful to update the document stating the coordinates so that it includes mention of Atlas v2 and v3.

Best regards,
Baptiste Heiles