help > RE: Average within / between network connectivity
Feb 3, 2022  02:02 PM | Alfonso Nieto-Castanon - Boston University
RE: Average within / between network connectivity
Hi Max,

That script will "read" the selected ROIs and second-level analysis from the CONN gui directly, so you need to go in the GUI to the results tab, select there an existing ROI-to-ROI analysis and define a second-level model, and then run the script which will import that information from the GUI. 

Best
Alfonso

Originally posted by max345:
Hi Alfonso,

I'm very new to CONN (only did some exploratory seed-based connectivity analyses between 2 groups), but now I want to use the script conn_withinbetweenROItest (with ROIs of the Default Mode network) in CONN (version 20.b).

For this, I defined my between-subjects contrast etc. in the results (second-level) tab and typed conn_withinbetweenROItest in the MATLAB command line. But after that, the following error was displayed:

Reference to non-existent field 'roiselected2'.
Error in conn_withinbetweenROItest (line 16)
ntargets=CONN_x.Results.xX.roiselected2;  %selected target ROIs
(indexes to names below)

I need to select my ROIs again or to name my selected ROIs, but how can I name or select my ROIs? 


Thank you for your help!

Threaded View

TitleAuthorDate
Ruth Shaffer Apr 27, 2016
Alfonso Nieto-Castanon May 4, 2016
Chabran Eléna Sep 20, 2018
Maria Beser Feb 11, 2022
max345 Feb 1, 2022
RE: Average within / between network connectivity
Alfonso Nieto-Castanon Feb 3, 2022
max345 Feb 4, 2022
Alfonso Nieto-Castanon Feb 4, 2022
max345 Feb 9, 2022
max345 Feb 5, 2022
Himanshu Joshi Feb 16, 2018
Alfonso Nieto-Castanon Apr 28, 2018
Himanshu Joshi Apr 9, 2018
Himanshu Joshi Apr 28, 2018
Himanshu Joshi Mar 13, 2018
Himanshu Joshi Feb 26, 2018
Jon Dudley May 4, 2016
Alfonso Nieto-Castanon May 5, 2016
Helene Veenstra Feb 8, 2018
Alfonso Nieto-Castanon Feb 14, 2018
Helene Veenstra Feb 15, 2018
Stephen L. Feb 8, 2018
Helene Veenstra Feb 12, 2018
Mariah DeSerisy Apr 30, 2020
Elizabeth Olson May 16, 2020
Alfonso Nieto-Castanon May 19, 2020
Nadine Smith Feb 23, 2021
ryanw412 Dec 16, 2021
Jose Maximo Apr 28, 2021
Olivier Roy Oct 15, 2021
Karli Carston Nov 9, 2021