nifti2_data_format
nifti2_data_format > Proposal : set the image orientation
Mar 1, 2011 02:03 PM | Cinly Ooi
Proposal : set the image orientation
Dear All,
Image orientation (Radiological/Neurological) is still a big problem. NifTI-1, IMHO (which may be wrong) actually adds to the confusion rather than saving us from it coz I have to worry about two things: (1) Whether software X flips the image and (2)whether software honour sform_code or pform_code. Is there any possibility that the image orientation is fixed to either radiological/neurological.
The reason is this means all software will be free of this problem once and for all. I don't have to check whether an image is flipped by XXX software, mricro need not tell me that it does not flip images etc. Moreover, this means we deal with the image orientation at one place, i.e. interface between scanner's DICOM server and nifTI conversion. This is the place where most imaging expertise in handling imaging data is.
Thanks
Cinly
Image orientation (Radiological/Neurological) is still a big problem. NifTI-1, IMHO (which may be wrong) actually adds to the confusion rather than saving us from it coz I have to worry about two things: (1) Whether software X flips the image and (2)whether software honour sform_code or pform_code. Is there any possibility that the image orientation is fixed to either radiological/neurological.
The reason is this means all software will be free of this problem once and for all. I don't have to check whether an image is flipped by XXX software, mricro need not tell me that it does not flip images etc. Moreover, this means we deal with the image orientation at one place, i.e. interface between scanner's DICOM server and nifTI conversion. This is the place where most imaging expertise in handling imaging data is.
Thanks
Cinly
Threaded View
| Title | Author | Date |
|---|---|---|
| Mark Jenkinson | Feb 28, 2011 | |
| Mark Jenkinson | Mar 15, 2011 | |
| Cinly Ooi | Mar 15, 2011 | |
| Cinly Ooi | Mar 2, 2011 | |
| Ged Ridgway | Mar 7, 2011 | |
| Jon Clayden | Mar 5, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Andrew Janke | Mar 1, 2011 | |
| Cinly Ooi | Mar 2, 2011 | |
| Satrajit Ghosh | Mar 5, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Denis Rivière | Feb 28, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Brandon Whitcher | Mar 1, 2011 | |
| Satrajit Ghosh | Feb 28, 2011 | |
| Jonas Larsson | Mar 1, 2011 | |
| Mark Horsfield | Mar 1, 2011 | |
| Andrew Janke | Mar 1, 2011 | |
| Jochen Weber | Feb 28, 2011 | |
| Randall Frank | Mar 1, 2011 | |
| Michael Martinez | Feb 28, 2011 | |
| Cinly Ooi | Feb 28, 2011 | |
| Chris Rorden | Feb 28, 2011 | |
