nifti2_data_format
nifti2_data_format > RE: Proposal : set the image orientation
Mar 1, 2011 11:03 PM | Andrew Janke
RE: Proposal : set the image orientation
+10 on removing the radio/neuro schemozzle.
But I'd prefer that NifTi just stores the data in a well defined co-ordinate system, like DICOM/MINC/etc. eg in MINC we have this:
X increases from patient left to right
Y increases from patient posterior to anterior
Z increases from patient inferior to superior
This is all we need as the whole neuro vs radio debate should not be about storage, its a viewing convention and should be left at that. My thought is all you need is a checkbox/preference setting for fslview/SPM/freesurfer that allows you to view your data in your particular flavour. We currently don't have such a checkbox in register/Display/other minc viewing things but then there has never been a call for it that I have heard. All MINC viewing tools are neuro oriented.
A side note is that there are ruminations afoot right now to read/write NifTi files with MINC, I for one am opposing it right now as I am loathe to drag MINC into this radio vs neuro "format" mess. As Cinly mentions, currently if I am given a NifTi file to import I cannot resolve the L/R issue unless I know something about the files provenance.
a
But I'd prefer that NifTi just stores the data in a well defined co-ordinate system, like DICOM/MINC/etc. eg in MINC we have this:
X increases from patient left to right
Y increases from patient posterior to anterior
Z increases from patient inferior to superior
This is all we need as the whole neuro vs radio debate should not be about storage, its a viewing convention and should be left at that. My thought is all you need is a checkbox/preference setting for fslview/SPM/freesurfer that allows you to view your data in your particular flavour. We currently don't have such a checkbox in register/Display/other minc viewing things but then there has never been a call for it that I have heard. All MINC viewing tools are neuro oriented.
A side note is that there are ruminations afoot right now to read/write NifTi files with MINC, I for one am opposing it right now as I am loathe to drag MINC into this radio vs neuro "format" mess. As Cinly mentions, currently if I am given a NifTi file to import I cannot resolve the L/R issue unless I know something about the files provenance.
a
Threaded View
| Title | Author | Date |
|---|---|---|
| Mark Jenkinson | Feb 28, 2011 | |
| Mark Jenkinson | Mar 15, 2011 | |
| Cinly Ooi | Mar 15, 2011 | |
| Cinly Ooi | Mar 2, 2011 | |
| Ged Ridgway | Mar 7, 2011 | |
| Jon Clayden | Mar 5, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Andrew Janke | Mar 1, 2011 | |
| Cinly Ooi | Mar 2, 2011 | |
| Satrajit Ghosh | Mar 5, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Denis Rivière | Feb 28, 2011 | |
| Cinly Ooi | Mar 1, 2011 | |
| Brandon Whitcher | Mar 1, 2011 | |
| Satrajit Ghosh | Feb 28, 2011 | |
| Jonas Larsson | Mar 1, 2011 | |
| Mark Horsfield | Mar 1, 2011 | |
| Andrew Janke | Mar 1, 2011 | |
| Jochen Weber | Feb 28, 2011 | |
| Randall Frank | Mar 1, 2011 | |
| Michael Martinez | Feb 28, 2011 | |
| Cinly Ooi | Feb 28, 2011 | |
| Chris Rorden | Feb 28, 2011 | |
