nifti2_data_format > RE: Proposal : set the image orientation
Mar 1, 2011  11:03 PM | Andrew Janke
RE: Proposal : set the image orientation
+10 on removing the radio/neuro schemozzle.

But I'd prefer that NifTi just stores the data in a well defined co-ordinate system, like DICOM/MINC/etc. eg in MINC we have this:

X increases from patient left to right
Y increases from patient posterior to anterior
Z increases from patient inferior to superior

This is all we need as the whole neuro vs radio debate should not be about storage, its a viewing convention and should be left at that. My thought is all you need is a checkbox/preference setting for fslview/SPM/freesurfer that allows you to view your data in your particular flavour. We currently don't have such a checkbox in register/Display/other minc viewing things but then there has never been a call for it that I have heard. All MINC viewing tools are neuro oriented.

A side note is that there are ruminations afoot right now to read/write NifTi files with MINC, I for one am opposing it right now as I am loathe to drag MINC into this radio vs neuro "format" mess. As Cinly mentions, currently if I am given a NifTi file to import I cannot resolve the L/R issue unless I know something about the files provenance.


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TitleAuthorDate
Mark Jenkinson Feb 28, 2011
Mark Jenkinson Mar 15, 2011
Cinly Ooi Mar 15, 2011
Cinly Ooi Mar 2, 2011
Ged Ridgway Mar 7, 2011
Jon Clayden Mar 5, 2011
Cinly Ooi Mar 1, 2011
RE: Proposal : set the image orientation
Andrew Janke Mar 1, 2011
Cinly Ooi Mar 2, 2011
Satrajit Ghosh Mar 5, 2011
Cinly Ooi Mar 1, 2011
Cinly Ooi Mar 1, 2011
Cinly Ooi Mar 1, 2011
Cinly Ooi Mar 1, 2011
Denis Rivière Feb 28, 2011
Cinly Ooi Mar 1, 2011
Brandon Whitcher Mar 1, 2011
Satrajit Ghosh Feb 28, 2011
Jonas Larsson Mar 1, 2011
Mark Horsfield Mar 1, 2011
Andrew Janke Mar 1, 2011
Jochen Weber Feb 28, 2011
Randall Frank Mar 1, 2011
Michael Martinez Feb 28, 2011
Cinly Ooi Feb 28, 2011
Chris Rorden Feb 28, 2011