FSL

FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK.

Specifications

Category:

Tensor Metric, Volumetric Analysis, Segmentation, Registration, Affine Warp, Independent Component Analysis, Temporal Transformation, Tractography, Image Display

License:

FSL License

Development Status:

5 - Production/Stable/Mature

Diagnosis:

Domain:

Environment:

Console (Text Based), X11 Applications

Intended Audience:

End Users

Natural Language:

English

Operating System:

MacOS, Windows NT/2000, Linux, SunOS/Solaris

Programming Language:

C, C++

Supported Data Format:

ANALYZE, NIfTI-1

Associations

is part of:

NeuroDebian
HCP WU-Minn Consortium

is from the makers of:

HCP WU-Minn Consortium

is installed on:

CBRAIN
Neurodocker
NITRC Computational Environment (NITRC-CE)

is required to build:

Rodent Brain Extraction Tool

is required to run:

BrainSolution
BrainParser
PANDA: a pipeline tool for diffusion MRI
SOCK
Corpus Callosum Thickness Profile Analysis Pipeline

works well with:

FreeSurfer
Center for Computational Biology (CCB)
HCP Harvard/MGH-UCLA
NIPY Pipeline and Interfaces
PyMVPA
MRIcron
CANDI Neuroimaging Access Point
TractoR: Tractography with R
REST: a toolkit for resting-state fMRI
Laboratory of Neuro Imaging (LONI)
Neuroimaging Made Easy Blog
Seed-based d Mapping (SDM, formerly Signed Differential Mapping)
NIDB - Neuroinformatics Database
NCANDA: Data Integration Component
DTI-TK
IIT Human Brain Atlas (v.5.0)
MRIcroGL
MRIcroS

Recent Activity - Documents

PubMed Mentions documentation

Genetic animal models of depression and ethanol preference provide support for cholinergic and serotonergic involvement in depression and alcoholism. posted by NITRC Moderator on Dec 16, 2017

PubMed Mentions documentation

An attempt to standardize APTT reagents used to monitor heparin therapy. posted by NITRC Moderator on Dec 16, 2017

PubMed Mentions documentation

Selective breeding for increased cholinergic function: biometrical genetic analysis of muscarinic responses. posted by NITRC Moderator on Dec 16, 2017

PubMed Mentions documentation

The functional and structural changes of the glomerulus throughout the course of murine lupus nephritis. posted by NITRC Moderator on Dec 16, 2017

PubMed Mentions documentation

Genetic analyses of growth, real-time ultrasound, carcass, and pork quality traits in Duroc and Landrace pigs: I. Breed effects. posted by NITRC Moderator on Dec 16, 2017

PubMed Mentions documentation

The Flinders Sensitive Line exhibits enhanced thermic responsiveness to nicotine relative to the Sprague-Dawley rat. posted by NITRC Moderator on Dec 16, 2017

PubMed Mentions documentation

Ethanol and complement hemolytic activity of selectively bred hypercholinergic rats. posted by NITRC Moderator on Dec 16, 2017

PubMed Mentions documentation

Immobility-reducing effects of antidepressants in a genetic animal model of depression. posted by NITRC Moderator on Dec 16, 2017

PubMed Mentions documentation

Identification and expression of five mutations in the human acid sphingomyelinase gene causing types A and B Niemann-Pick disease. Molecular evidence for genetic heterogeneity in the neuronopathic and non-neuronopathic forms. posted by NITRC Moderator on Dec 16, 2017

PubMed Mentions documentation

Sequence analysis of five new field isolates demonstrates that the chain length of potato spindle tuber viroid (PSTVd) is not strictly conserved but as variable as in other viroids. posted by NITRC Moderator on Dec 16, 2017

Recent Activity - News

Tool & Resource news

2015 FSL Course: 8-12 June, Waikiki Beach, Hawaii, USA posted by Mark Jenkinson on Feb 20, 2015

Tool & Resource news

2013 FSL & FreeSurfer Course posted by Mark Jenkinson on Mar 5, 2013

Tool & Resource news

FSL 5.0 Released posted by Matthew Webster on Sep 7, 2012

Tool & Resource news

2012 FSL & FreeSurfer Course posted by Mark Jenkinson on Nov 28, 2011

Tool & Resource news

FSL 4.1.9 released posted by Mark Jenkinson on Nov 18, 2011

Tool & Resource news

FSL 4.1.8 Released posted by Matthew Webster on Jul 14, 2011

Tool & Resource news

The 2011 FSL & FreeSurfer Course posted by Matthew Webster on Feb 24, 2011

Tool & Resource news

2010 FSL and Freesurfer Course posted by Matthew Webster on Feb 2, 2010

Tool & Resource news

FSL 4.1.5 Released posted by Matthew Webster on Jan 29, 2010

Tool & Resource news

FSL 4.1.4 Released posted by Matthew Webster on Jun 11, 2009

Recent Activity - Files

fsl: Current release

Current Release posted by David Kennedy on Jan 30, 2012

fsl: 4.1.8 release

FSL Downloads posted by Matthew Webster on Jul 12, 2011

fsl: fsl 4.1.6 release

FSL 4.1.6 posted by Matthew Webster on Jul 9, 2010

fsl: 4.1.5 release

FSL Downloads posted by Matthew Webster on Feb 4, 2010

fsl: 4.1.4 release

FSL downloads posted by Matthew Webster on Jun 9, 2009

fsl: 4.1.0 release

FSL Download Page posted by David Kennedy on Aug 27, 2008

fsl: 4.0.4 release

FSL Test Data posted by David Kennedy on Aug 6, 2008

fsl: 4.0.4 release

FSL Download posted by David Kennedy on Aug 6, 2008

Members

Admin

Reference

Senior Developer

FSL

Specifications

Associations

Recent Activity - Documents

Recent Activity - News

Recent Activity - Files

Statistics more information

Participate!

Reviews & Ratings more information

OVERALL:
INSTALLATION:
DOCUMENTATION: