FSL

FSL is a comprehensive library of image analysis and statistical tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK.

Specifications

Category:

Tensor Metric, Volumetric Analysis, Segmentation, Registration, Affine Warp, Independent Component Analysis, Temporal Transformation, Tractography, Image Display

License:

FSL License

Development Status:

5 - Production/Stable/Mature

Diagnosis:

Domain:

Environment:

Console (Text Based), X11 Applications

Intended Audience:

End Users

Natural Language:

English

Operating System:

MacOS, Windows NT/2000, Linux, SunOS/Solaris

Programming Language:

C, C++

Supported Data Format:

ANALYZE, NIfTI-1

Associations

is part of:

NeuroDebian
HCP WU-Minn Consortium

is from the makers of:

HCP WU-Minn Consortium

is installed on:

CBRAIN
Neurodocker
NITRC Computational Environment (NITRC-CE)

is required to build:

Rodent Brain Extraction Tool

is required to run:

BrainSolution
BrainParser
PANDA: a pipeline tool for diffusion MRI
SOCK
Corpus Callosum Thickness Profile Analysis Pipeline

works well with:

Longitudinal Analysis Workspace
FreeSurfer
Center for Computational Biology (CCB)
HCP Harvard/MGH-UCLA
NIPY Pipeline and Interfaces
PyMVPA
MRIcron
CANDI Neuroimaging Access Point
TractoR: Tractography with R
REST: a toolkit for resting-state fMRI
Laboratory of Neuro Imaging (LONI)
Neuroimaging Made Easy Blog
Seed-based d Mapping (SDM, formerly Signed Differential Mapping)
NIDB - Neuroinformatics Database
NCANDA: Data Integration Component
DTI-TK
IIT Human Brain Atlas (v.5.0)
MRIcroGL
MRIcroS

Recent Activity - Documents

PubMed Mentions documentation

Metastable neural dynamics underlies cognitive performance across multiple behavioural paradigms. posted by NITRC Moderator on Aug 29

PubMed Mentions documentation

Autonomic flexibility reflects learning and associated neuroplasticity in old age. posted by NITRC Moderator on Aug 29

PubMed Mentions documentation

Mutation Carriers with Reduced C-Afferent Density Reveal Cortical Dynamics of Pain-Action Relationship during Acute Pain. posted by NITRC Moderator on Aug 29

PubMed Mentions documentation

Impaired cognition is related to microstructural integrity in relapsing remitting multiple sclerosis. posted by NITRC Moderator on Aug 29

PubMed Mentions documentation

Altered white matter integrity in patients with monocular blindness: A diffusion tensor imaging and tract-based spatial statistics study. posted by NITRC Moderator on Aug 29

PubMed Mentions documentation

Fixel-based analysis links white matter characteristics, serostatus and clinical features in limbic encephalitis. posted by NITRC Moderator on Aug 29

PubMed Mentions documentation

Parietal Perfusion Alterations in Parkinson's Disease Patients Without Dementia. posted by NITRC Moderator on Aug 29

PubMed Mentions documentation

Comprehensive rehabilitation in a patient with corpus callosum syndrome after traumatic brain injury: Case report. posted by NITRC Moderator on Aug 29

PubMed Mentions documentation

Towards accurate and unbiased imaging-based differentiation of Parkinson's disease, progressive supranuclear palsy and corticobasal syndrome. posted by NITRC Moderator on Aug 29

PubMed Mentions documentation

Relationships between gross motor skills, cardiovascular fitness, and visuospatial working memory-related brain activation in 8- to 10-year-old children. posted by NITRC Moderator on Aug 29

Recent Activity - News

Tool & Resource news

2015 FSL Course: 8-12 June, Waikiki Beach, Hawaii, USA posted by Mark Jenkinson on Feb 20, 2015

Tool & Resource news

2013 FSL & FreeSurfer Course posted by Mark Jenkinson on Mar 5, 2013

Tool & Resource news

FSL 5.0 Released posted by Matthew Webster on Sep 7, 2012

Tool & Resource news

2012 FSL & FreeSurfer Course posted by Mark Jenkinson on Nov 28, 2011

Tool & Resource news

FSL 4.1.9 released posted by Mark Jenkinson on Nov 18, 2011

Tool & Resource news

FSL 4.1.8 Released posted by Matthew Webster on Jul 14, 2011

Tool & Resource news

The 2011 FSL & FreeSurfer Course posted by Matthew Webster on Feb 24, 2011

Tool & Resource news

2010 FSL and Freesurfer Course posted by Matthew Webster on Feb 2, 2010

Tool & Resource news

FSL 4.1.5 Released posted by Matthew Webster on Jan 29, 2010

Tool & Resource news

FSL 4.1.4 Released posted by Matthew Webster on Jun 11, 2009

Recent Activity - Files

fsl: Current release

Current Release posted by David Kennedy on Jan 30, 2012

fsl: 4.1.8 release

FSL Downloads posted by Matthew Webster on Jul 12, 2011

fsl: fsl 4.1.6 release

FSL 4.1.6 posted by Matthew Webster on Jul 9, 2010

fsl: 4.1.5 release

FSL Downloads posted by Matthew Webster on Feb 4, 2010

fsl: 4.1.4 release

FSL downloads posted by Matthew Webster on Jun 9, 2009

fsl: 4.1.0 release

FSL Download Page posted by David Kennedy on Aug 27, 2008

fsl: 4.0.4 release

FSL Test Data posted by David Kennedy on Aug 6, 2008

fsl: 4.0.4 release

FSL Download posted by David Kennedy on Aug 6, 2008

Members

Admin

Reference

Senior Developer

FSL

Specifications

Associations

Recent Activity - Documents

Recent Activity - News

Recent Activity - Files

Statistics more information

Participate!

Reviews & Ratings more information

OVERALL:
INSTALLATION:
DOCUMENTATION: