Diffusion MRI Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography
This is a diffusion-weighted MRI processing Matlab toolbox (including binaries), which can be used to:
• Compute the Q-Ball Imaging Orientation Distribution Function in Constant Solid Angle (CSA-ODF) (Aganj et al, MRM 2010).
• Perform Hough-transform tractography (Aganj et al, MedIA 2011).
• Visualize ODFs and tracts, and export them for further analysis.
• Verify the correctness of the diffusion gradient table (Aganj, Sci Rep 2018).
• Compute and interactively visualize the connectivity matrix.
• Augment the connectivity matrix with indirect connections (Aganj et al, ISMRM 2014).
For short tutorials, see EXAMPLE.m and EXAMPLE_CLI.m. If available, GPUs can be used for speed-up.
• Compute the Q-Ball Imaging Orientation Distribution Function in Constant Solid Angle (CSA-ODF) (Aganj et al, MRM 2010).
• Perform Hough-transform tractography (Aganj et al, MedIA 2011).
• Visualize ODFs and tracts, and export them for further analysis.
• Verify the correctness of the diffusion gradient table (Aganj, Sci Rep 2018).
• Compute and interactively visualize the connectivity matrix.
• Augment the connectivity matrix with indirect connections (Aganj et al, ISMRM 2014).
For short tutorials, see EXAMPLE.m and EXAMPLE_CLI.m. If available, GPUs can be used for speed-up.
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is from the makers of:
Image Segmentation Based on the Local Center of Mass Computation
Mid-Space-Independent and Intermediate Deformable Image Registration
Quantification of Structural Brain Connectivity via a Conductance Model
Segmentation-based Multimodal Rigid Image Registration
Tissue Thickness Estimation via Minimum Line Integrals
Wavelet-based Image Fusion
Expected Label Value (ELV) Computation for Multi-Atlas Image Soft-Segmentation
Locus Coeruleus Manual Labels for 20 HCP Subjects
Mid-Space-Independent and Intermediate Deformable Image Registration
Quantification of Structural Brain Connectivity via a Conductance Model
Segmentation-based Multimodal Rigid Image Registration
Tissue Thickness Estimation via Minimum Line Integrals
Wavelet-based Image Fusion
Expected Label Value (ELV) Computation for Multi-Atlas Image Soft-Segmentation
Locus Coeruleus Manual Labels for 20 HCP Subjects
Recent Activity - Documents
ISMRM Abstract on brain connectivity augmentation posted by Iman Aganj on Jun 26, 2021
Article on verification of the diffusion MRI gradient table posted by Iman Aganj on Oct 17, 2020
Article describing the Hough-transform tractography posted by Iman Aganj on Oct 17, 2020
Article describing the CSA-ODF posted by Iman Aganj on Oct 17, 2020
Recent Activity - Forums
Welcome to Open-Discussion posted by Iman Aganj on Apr 10, 2017
Recent Activity - Files
csaodf-hough: Linux 64-bit binary release
CSAODF-HoughTract_bin_linux64.zip posted by Iman Aganj on Nov 9, 2018
csaodf-hough: Windows 64-bit binary release
CSAODF-HoughTract_bin_win64.zip posted by Iman Aganj on Nov 9, 2018