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IBSR

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The Internet Brain Segmentation Repository (IBSR) provides manually-guided expert segmentation results along with magnetic resonance brain image data. Its purpose is to encourage the evaluation and development of segmentation methods. Please see the MediaWiki for more information.

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Specifications

Category:

Data, Database, Test Data, Knowledge Environment, Web Service, Websites, Quality Metrics

License:

Free For Non-Commercial Use Only

Development Status:

5 - Production/Stable/Mature

Diagnosis:

Attention Deficit Disorder with Hyperactivity, Autistic Disorder, Alzheimer Disease, Diabetes Mellitus, Epilepsy, Hydrocephalus

Domain:

MR

Intended Audience:

End Users

Natural Language:

English

Operating System:

Associations

is from the makers of:

IATR
CANDI Neuroimaging Access Point
Manually Labeled MRI Brain Scan Database
MRI Neuroanatomy Labeling Services

works well with:

Internet Brain Volume Database (IBVD)

Recent Activity - Documents

PubMed Mentions documentation

Accurate and robust segmentation of neuroanatomy in T1-weighted MRI by combining spatial priors with deep convolutional neural networks. posted by NITRC Moderator on Jul 18

PubMed Mentions documentation

Automatic volumetry on MR brain images can support diagnostic decision making. posted by NITRC Moderator on Sep 21, 2019

PubMed Mentions documentation

Online resource for validation of brain segmentation methods. posted by NITRC Moderator on Sep 21, 2019

PubMed Mentions documentation

Joint brain parametric T1-map segmentation and RF inhomogeneity calibration. posted by NITRC Moderator on Sep 21, 2019

PubMed Mentions documentation

Automatic segmentation of the hippocampus and the amygdala driven by hybrid constraints: method and validation. posted by NITRC Moderator on Sep 21, 2019

PubMed Mentions documentation

Spatial based expectation maximizing (EM). posted by NITRC Moderator on Sep 21, 2019

PubMed Mentions documentation

Diffeomorphic registration using geodesic shooting and Gauss-Newton optimisation. posted by NITRC Moderator on Sep 21, 2019

PubMed Mentions documentation

Accuracy and reliability of automated gray matter segmentation pathways on real and simulated structural magnetic resonance images of the human brain. posted by NITRC Moderator on Sep 21, 2019

PubMed Mentions documentation

Region-based Active Contour Model based on Markov Random Field to Segment Images with Intensity Non-Uniformity and Noise. posted by NITRC Moderator on Sep 21, 2019

PubMed Mentions documentation

Nonrigid medical image registration based on mesh deformation constraints. posted by NITRC Moderator on Sep 21, 2019

Recent Activity - Trackers

Support tracker

Missing ethics statement for IBSR datasets posted by Janne West on Aug 23, 2016

Recent Activity - Forums

open-discussion forum

RE: Preprocessing Code posted by Andrew Worth on Oct 11

open-discussion forum

RE: Preprocessing Code posted by M. Fatih TALU on Oct 10

open-discussion forum

RE: Preprocessing Code posted by Andrew Worth on Oct 10

Preprocessing Code posted by M. Fatih TALU on Oct 10

open-discussion forum

Preprocessing Code posted by M. Fatih TALU on Oct 10

RE: problem with IBSR image posted by parastu95 on Aug 29

open-discussion forum

RE: Problem with "IBSR_V2.0_nifti_stripped" NIfTI files posted by Andrew Worth on Jul 17

open-discussion forum

RE: Problem with "IBSR_V2.0_nifti_stripped" NIfTI files posted by Andrew Worth on Jul 17

open-discussion forum

Problem with "IBSR_V2.0_nifti_stripped" NIfTI files posted by Vikas V on Jul 17

RE: Segmentation Results in IBSR Data posted by Merve Tan on Jul 6, 2019

Recent Activity - News

Tool & Resource news

IBSR now on NITRC posted by Andrew Worth on Jul 10, 2013

Recent Activity - Files

20 Normal Subjects, T1-Weighted Scans with Segmentations: Updated README release

20Normals.README.txt posted by Andrew Worth on Jan 4, 2016

ibsr: How to open IBSR ".img" files release

OpeningIBSR.imgFiles.pdf posted by Andrew Worth on Dec 17, 2013

18 Subjects, 1.5mm scans with Seg. and skull-stripped in NIfTI format: IBSR_V2.0 skull-stripped NIfTI release

IBSR_V2.0_nifti_stripped.tgz posted by Andrew Worth on Jul 11, 2013

18 Subjects, 1.5mm scans with Segmentations: IBSR_V2.0 release

IBSR_15_ANALYZE.tgz posted by Andrew Worth on Jul 5, 2013

18 Subjects, 1.5mm scans with Segmentations: IBSR_V2.0 release

IBSR_15parc_ANALYZE.tgz posted by Andrew Worth on Jul 5, 2013

18 Subjects, 1.5mm scans with Segmentations: IBSR_V2.0 release

IBSR_16_ANALYZE.tgz posted by Andrew Worth on Jul 5, 2013

18 Subjects, 1.5mm scans with Segmentations: IBSR_V2.0 release

IBSR_16parc_ANALYZE.tgz posted by Andrew Worth on Jul 5, 2013

18 Subjects, 1.5mm scans with Segmentations: IBSR_V2.0 release

IBSR_17_ANALYZE.tgz posted by Andrew Worth on Jul 5, 2013

18 Subjects, 1.5mm scans with Segmentations: IBSR_V2.0 release

IBSR_18_ANALYZE.tgz posted by Andrew Worth on Jul 5, 2013

18 Subjects, 1.5mm scans with Segmentations: IBSR_V2.0 release

IBSR_18parc_ANALYZE.tgz posted by Andrew Worth on Jul 5, 2013

Statistics more information

NeuroLex ID: nif-0000-00032

RRID: SCR_001994

Funding: R01 NS34189
30-SEP-1998 - 31-AUG-2007
Human Brain Project

Documents: 91

Forums: 82 messages in 2 forums

Mailing Lists: 0

News Items: 1

Task Manager: 0 open / 0 total

Tracker: 1 open / 1 total

Total Downloads: 47547

Registered: Aug 16, 2007

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Reviews & Ratings more information

User Reviews (8)

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INSTALLATION:
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