MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation
The method utilizes a novel tree-based groupwise registration method for concurrent alignment of both the atlases and the target images, and an iterative groupwise segmentation method for simultaneous consideration of segmentation information propagated from all available images, including the atlases and other newly segmented target images.
MABMIS contains a training step and a testing step. In the training step, a groupwise registration is performed to generate a tree structure for the atlases. In the testing step, a group of target images are simultaneously and iteratived segmented using the pre-constructed atlas tree.
Prior to applying MABMIS, the atlas images and target images need be skullstripped, and linearly transformed to a common space.
Specifications
Associations
Recent Activity - Forums
Is there a log with description of errors? posted by Hugues Fontenelle on Feb 11, 2014
Welcome to Open-Discussion posted by Xiafoeng Liu on Jan 6, 2014
Welcome to Help posted by Xiafoeng Liu on Jan 6, 2014
Recent Activity - Files
mabmis_slicer4: MABMIS manual release
MABMIS_Documenatation.pdf posted by Xiafoeng Liu on Jan 8, 2014
mabmis_slicer4: Test Data: release
MABMIS_TestData.zip posted by Xiafoeng Liu on Jan 8, 2014
mabmis_slicer4: Macosx_x64_precompiled release
MABMIS_slicer_r22807_macosx_x64.tar.gz posted by Xiafoeng Liu on Jan 8, 2014
mabmis_slicer4: Linux_x64_precompiled release
MABMIS_slicer_r22805-linux-amd64.tar.gz posted by Xiafoeng Liu on Jan 8, 2014
mabmis_slicer4: Windows_x64_vs9_precompiled release
MABMIS_slicer_r22761-win64-vs9.zip posted by Xiafoeng Liu on Jan 8, 2014