Hi Amy,

Thanks for reporting this, it looks like the coordinates of your ROIs are being misinterpreted by these displays. Could you please let me know a bit more information about the specifc ROIs that you are using here? are they surface-based ROIs defined for example using a freesurfer .annot file, are they defined in MNI-space ROIs but simply part of an otherwise surface-level analysis, what functional data are they associated with -in the "compute average timeseries from .. dataset." field-, etc.

And regarding diffusion steps, 10 is a minimal value (somewhat similar to ~4mm in 3d volumes) I typically find 40 steps (somewhat similar to ~8mm in 3d volumes) a little bit better (for more details see Hagler Jr, D. J., Saygin, A. P., & Sereno, M. I. (2006). Smoothing and cluster thresholding for cortical surface-based group analysis of fMRI data. Neuroimage, 33(4), 1093-1103)

Thanks
Alfonso
Originally posted by Amy Bouchard: