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help > RE: Problem displaying surface-level analyses
Feb 19, 2020 06:02 PM | Alfonso Nieto-Castanon - Boston University
RE: Problem displaying surface-level analyses
Hi Amy,
For surface-based analyses the "analysis mask" option is typically set to "explicit mask (mask.surface.brainmask.nii)" (this file is located in conn/utils/surf and it simply masks out the medial/subcortical portions of the cortical surface).
As a side note, do not worry if you have not modified this field from its default value ("explicit mask (mask.volume.brainmask.nii)"). For surface-based analyses (i.e. when the "anaysis space" option in CONN is set to "surface...") CONN will assume that an explicit mask that uses CONN's default "mask.volume.brainmask.nii" file actually refers to the associated CONN's default "mask.surface.brainmask.nii" file instead
Best
Alfonso
Originally posted by Amy Bouchard:
For surface-based analyses the "analysis mask" option is typically set to "explicit mask (mask.surface.brainmask.nii)" (this file is located in conn/utils/surf and it simply masks out the medial/subcortical portions of the cortical surface).
As a side note, do not worry if you have not modified this field from its default value ("explicit mask (mask.volume.brainmask.nii)"). For surface-based analyses (i.e. when the "anaysis space" option in CONN is set to "surface...") CONN will assume that an explicit mask that uses CONN's default "mask.volume.brainmask.nii" file actually refers to the associated CONN's default "mask.surface.brainmask.nii" file instead
Best
Alfonso
Originally posted by Amy Bouchard:
Hi Alfonso,
what should the analysis mask be set to in the setup options folder, for surface-based analyses?
Also, are there any advanced settings for the connectome ring in the ROI to ROI analyses in CONN v. 19b, as in the previous version?
Thanks,
Amy
what should the analysis mask be set to in the setup options folder, for surface-based analyses?
Also, are there any advanced settings for the connectome ring in the ROI to ROI analyses in CONN v. 19b, as in the previous version?
Thanks,
Amy
Threaded View
| Title | Author | Date |
|---|---|---|
| Amy Bouchard | Jan 22, 2020 | |
| Alfonso Nieto-Castanon | Jan 27, 2020 | |
| Amy Bouchard | Jan 27, 2020 | |
| Alfonso Nieto-Castanon | Feb 6, 2020 | |
| Amy Bouchard | Feb 12, 2020 | |
| Alfonso Nieto-Castanon | Feb 14, 2020 | |
| Amy Bouchard | Feb 15, 2020 | |
| Amy Bouchard | Feb 16, 2020 | |
| Alfonso Nieto-Castanon | Feb 16, 2020 | |
| Amy Bouchard | Feb 16, 2020 | |
| Alfonso Nieto-Castanon | Feb 16, 2020 | |
| Amy Bouchard | Feb 16, 2020 | |
| Alfonso Nieto-Castanon | Feb 16, 2020 | |
| Amy Bouchard | Feb 16, 2020 | |
| Alfonso Nieto-Castanon | Feb 16, 2020 | |
| Amy Bouchard | Feb 16, 2020 | |
| Alfonso Nieto-Castanon | Feb 17, 2020 | |
| Andrew Lynn | Oct 8, 2020 | |
| Alfonso Nieto-Castanon | Oct 8, 2020 | |
| Andrew Lynn | Oct 8, 2020 | |
| Amy Bouchard | Feb 18, 2020 | |
| Alfonso Nieto-Castanon | Feb 19, 2020 | |
| Amy Bouchard | Feb 19, 2020 | |
| Amy Bouchard | Feb 17, 2020 | |
| Amy Bouchard | Feb 16, 2020 | |
| Alfonso Nieto-Castanon | Feb 16, 2020 | |
| Amy Bouchard | Feb 6, 2020 | |
| Amy Bouchard | Feb 5, 2020 | |