Automatic Registration Toolbox

ATRA software for fully automated, fast, reliable, unbiased and inverse-consistent registration of within-subject multiple T1-weighted structural MRI brain volumes.

ART `acpcdetect' program for automatic detection of the AC and PC landmarks and the mid-sagittal plane on 3D structural MRI scans.

ART `brainwash' program for automatic multi-atlas skull-stripping of 3D structural MRI scans.

ART `3dwarper' program of non-linear inter-subject registration of 3D structural MRI scans.

Software (art2) for linear rigid-body intra-subject inter-modality (MRI-PET) image registration.

Data resource: The ART projects makes available corpus callosum segmentations of 316 normal subjects from the OASIS cross-sectional database

ART `yuki' program for fast, robust, and fully automatic segmentation of the corpus callosum on 3D structural MRI scans.

ART 'kaiba' program: estimates the hippocampal parenchymal fraction (HPF) from 3D T1W MRI.
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Specifications

Category:Segmentation, Registration, Nonlinear Warp
License:Free For Non-Commercial Use Only, OASIS
Development Status:3 - Alpha
Diagnosis:Attention Deficit Disorder with Hyperactivity, Bipolar Disorder, Brain Injuries, Child Development Disorders, Pervasive, Crohn Disease, Depression, Diabetes Mellitus, Epilepsy, Hypertension, Multiple Sclerosis, Obsessive-Compulsive Disorder, Schizophrenia, Stroke, Cocaine-Related Disorders
Domain:MR
Environment:Console (Text Based)
Intended Audience:End Users
Natural Language:English
Operating System:Linux
Programming Language:C++
Supported Data Format:NIfTI-1

Associations


Recent Activity

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Document Activity

PubMed Mentions documentation

Quantitative comparison of algorithms for inter-subject registration of 3D volumetric brain MRI scans. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Mindboggle: automated brain labeling with multiple atlases. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Implementation of high-dimensional feature map for segmentation of MR images. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Validation of a new cardiac image fusion software for three-dimensional integration of myocardial perfusion SPECT and stand-alone 64-slice CT angiography. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Implementing cost-effective 3-dimensional ultrasound using visual probe localization. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

3D electron microscopy of biological nanomachines: principles and applications. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Ventral striatal blood flow is altered by acute nicotine but not withdrawal from nicotine. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Classification of breast masses via nonlinear transformation of features based on a kernel matrix. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Quantitation in gated perfusion SPECT imaging: the Cedars-Sinai approach. posted by Nina Preuss on Dec 16, 2017

Document Activity

PubMed Mentions documentation

Validation of phalanx bone three-dimensional surface segmentation from computed tomography images using laser scanning. posted by Nina Preuss on Dec 16, 2017