Automatic Registration Toolbox

ATRA software for fully automated, fast, reliable, unbiased and inverse-consistent registration of within-subject multiple T1-weighted structural MRI brain volumes.

ART `acpcdetect' program for automatic detection of the AC and PC landmarks and the mid-sagittal plane on 3D structural MRI scans.

ART `brainwash' program for automatic multi-atlas skull-stripping of 3D structural MRI scans.

ART `3dwarper' program of non-linear inter-subject registration of 3D structural MRI scans.

Software (art2) for linear rigid-body intra-subject inter-modality (MRI-PET) image registration.

Data resource: The ART projects makes available corpus callosum segmentations of 316 normal subjects from the OASIS cross-sectional database

ART `yuki' program for fast, robust, and fully automatic segmentation of the corpus callosum on 3D structural MRI scans.

ART 'kaiba' program: estimates the hippocampal parenchymal fraction (HPF) from 3D T1W MRI.
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Specifications

Category:Segmentation, Registration, Nonlinear Warp
License:Free For Non-Commercial Use Only, OASIS
Development Status:3 - Alpha
Domain:MR
Environment:Console (Text Based)
Intended Audience:End Users
Natural Language:English
Operating System:Linux
Programming Language:C++
Supported Data Format:NIfTI-1

Associations


Recent Activity

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News Activity

Tool & Resource news

Release of Automatic Temporal Registration Algorithm (ATRA) posted by Babak Ardekani on Nov 6

File Activity

ATRA: Software for unbiased inverse-consistent within-subject registration of multiple T1-weighted structural brain MRI: ATRA Youtube Tutorial Part 4 release

Youtube Tutorial Part 4 posted by Babak Ardekani on Oct 31

File Activity

ATRA: Software for unbiased inverse-consistent within-subject registration of multiple T1-weighted structural brain MRI: ATRA Youtube Tutorial Part 3 release

Youtube Tutorial Part 3 posted by Babak Ardekani on Oct 31

File Activity

ATRA: Software for unbiased inverse-consistent within-subject registration of multiple T1-weighted structural brain MRI: ATRA Youtube Tutorial Part 2 release

Youtube Tutorial Part 2 posted by Babak Ardekani on Oct 31

File Activity

ATRA: Software for unbiased inverse-consistent within-subject registration of multiple T1-weighted structural brain MRI: ATRA Youtube Tutorial Part 1 release

Youtube Tutorial Part 1 posted by Babak Ardekani on Oct 31

File Activity

ATRA: Software for unbiased inverse-consistent within-subject registration of multiple T1-weighted structural brain MRI: ATRA Installation Tutorial Video (youtube) release

Youtube Installation Tutorial posted by Babak Ardekani on Oct 31

File Activity

ATRA: Software for unbiased inverse-consistent within-subject registration of multiple T1-weighted structural brain MRI: ATRA macOS binaries (Compiled under macOS Sierra Version 10.12.6) release

atra1.0_macOS.10.12.6.tar.gz posted by Babak Ardekani on Oct 31

File Activity

ATRA: Software for unbiased inverse-consistent within-subject registration of multiple T1-weighted structural brain MRI: ATRA Linux binaries (Compiled on CentOS 6.7) release

atra1.0_LinuxCentOS6.7.tar.gz posted by Babak Ardekani on Oct 31

Forum Activity

help forum

RE: acpcdetect for a Mac user? posted by Stephen L. on Sep 26

Forum Activity

help forum

RE: linear affine transformation from ART posted by Babak Ardekani on Sep 21