CONN : functional connectivity toolbox

CONN is a Matlab-based cross-platform software for the computation, display, and analysis of functional connectivity in fMRI (fcMRI).

CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, group ICA, masked ICA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package

CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.

Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs

GUI and batch processing
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
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Specifications

Category:Connectivity Analysis, Modeling, Multivariate Analysis, Principal Component Analysis, Regression, Correlation, Visualization
License:MIT/X Consortium License
Development Status:4 - Beta
Domain:MR
Intended Audience:Developers, End Users
Natural Language:English
Operating System:OS Independent
Programming Language:MATLAB
Supported Data Format:ANALYZE, MGH/MGZ, NIfTI-1

Recent Activity

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Conn : User defined ROI error posted by Vasudev Devulapally on Apr 29

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RE: relationship between clusters and WMFT scores posted by Vahab Youssofzadeh on Apr 29

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Vector Loading for many subjects posted by Arman Khojandi on Apr 28

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Conn second level analysis p-FDR posted by Ana Bueno on Apr 28

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flipped structural at 1st level posted by Athena Demertzi on Apr 28

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RE: Setup Pipeline error: "mismatched dimensions" posted by Matti Gärtner on Apr 28

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RE: Error at segmentation step posted by Tatyana Mukhina on Apr 28

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relationship between clusters and WMFT scores posted by gol mi on Apr 27

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Cross-correlation of connectivity clusters posted by Vahab Youssofzadeh on Apr 27

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RE: Error at segmentation step posted by Alfonso Nieto-Castanon on Apr 19