CONN : functional connectivity toolbox
CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, ICA, masked ICA, fc-MVPA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package
CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.
Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, fc-MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
https://www.conn-toolbox.org
Execution Options
Specifications
Associations
Recent Activity - Forums
RE: Multivariate regression - assumptions? posted by Shruti Kinger 19 hours ago
RE: Single subject analysis comparisons within a subject posted by Tamer Gezici on Sep 30
REPORTING CLUSTER AND SUBCLUSTER COORDINATES posted by Allyson Rosen on Sep 29
Temporal SNR in fMRI posted by jothini on Sep 29
Reports in CONN - registration/normalization posted by nina-d on Sep 24
Concatenation error in conn_batch posted by James Waltz on Sep 19
Conn freezing on preprocessing posted by Emma Tinney on Sep 17
Mixed-effects design with within-patient cross-over in CONN posted by Vanessa Vallesi on Sep 15
Recent Activity - News
Online CONN 2024 workshop registration open posted by Alfonso Nieto-Castanon on Feb 13, 2024
Online CONN 2023 workshop starting soon posted by Alfonso Nieto-Castanon on Nov 9, 2023
CONN new release posted by Alfonso Nieto-Castanon on Mar 15, 2023
CONN new release posted by Alfonso Nieto-Castanon on Feb 18, 2020
New CONN release and tutorials posted by Alfonso Nieto-Castanon on Jun 27, 2017
CONN New Year News posted by Alfonso Nieto-Castanon on Jan 12, 2017
CONN new release (15f) posted by Alfonso Nieto-Castanon on Sep 25, 2015
Announcing Cincinnati CONN course (MGH/HST) posted by Alfonso Nieto-Castanon on Jun 9, 2015
CONN v.13n Released posted by Alfonso Nieto-Castanon on Jul 8, 2013
conn toolbox version 13 released posted by Alfonso Nieto-Castanon on Oct 31, 2011
Recent Activity - Files
conn22v2407.zip posted by Alfonso Nieto-Castanon on Jul 9, 2024
conn: old releases: conn v.22.a (last 2022 release) release
conn22a.zip posted by Alfonso Nieto-Castanon on Mar 10, 2023
conn: older releases: conn v.21.a (last 2021 release) release
conn21a.zip posted by Alfonso Nieto-Castanon on Dec 31, 2021