CONN : functional connectivity toolbox
CONN includes a rich set of connectivity analyses (seed-based correlations, ROI-to-ROI graph analyses, group ICA, masked ICA, generalized PPI, ALFF, ICC, GCOR, LCOR, etc.) in a simple-to-use and powerful software package
CONN is available for resting state data (rsfMRI) as well as task-related designs. It covers the entire pipeline from raw fMRI data to hypothesis testing.
Highlights:
Comprehensive quality assurance methods/measures/displays (scrubbing/ART, CompCor/ICA/GSR denoising, GCOR/FD QC covariates)
Connectome-wide analyses (ICA, MVPA)
Dynamic connectivity analyses (dyn-ICA)
FWE-control of connectivity matrices (NBS)
Non-parametric cluster-level statistics (permutation tests)
ANOVA, regression, longitudinal, and mixed designs
Parallelization options (SGE/Grid Engine, PBS/Torque, LSF, Slurm)
Mac/Windows/Linux/HPC
SPM8/SPM12
http://www.conn-toolbox.org
Specifications
Associations
Recent Activity - Forums
Question about output file and units posted by David Fischer 17 hours ago
Denoising CSF confound posted by Fabien Hauw on Jan 21
RE: Error Set up functional data posted by Amy Bouchard on Jan 21
RE: importing existing connectivity matrices in CONN posted by Jaron Kupers on Jan 21
Between-condition contrast weighting in gPPI posted by Sara Kim on Jan 20
Using CONN with data preprocessed in C-PAC posted by mayayab on Jan 19
RE: How to define "site" as covariate posted by Alfonso Nieto-Castanon on Jan 18
RE: Analyze linear trend for one task with PPI posted by Gustavo Pamplona on Jan 18
Recent Activity - News
CONN new release posted by Alfonso Nieto-Castanon on Feb 18, 2020
New CONN release and tutorials posted by Alfonso Nieto-Castanon on Jun 27, 2017
CONN New Year News posted by Alfonso Nieto-Castanon on Jan 12, 2017
CONN new release (15f) posted by Alfonso Nieto-Castanon on Sep 25, 2015
Announcing Cincinnati CONN course (MGH/HST) posted by Alfonso Nieto-Castanon on Jun 9, 2015
CONN v.13n Released posted by Alfonso Nieto-Castanon on Jul 8, 2013
conn toolbox version 13 released posted by Alfonso Nieto-Castanon on Oct 31, 2011
Batch script for analyzing the NYU_CSC dataset posted by Alfonso Nieto-Castanon on Sep 16, 2009
Recent Activity - Files
conn20b.zip posted by Alfonso Nieto-Castanon on Dec 1, 2020
conn: older releases: conn v.19.c (last 2019 release) release
conn19c.zip posted by Alfonso Nieto-Castanon on Mar 14, 2020
conn: older releases: conn v.18.b (last 2018 release) release
conn18b.zip posted by Alfonso Nieto-Castanon on Dec 19, 2018