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MRIcron

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MRIcron is a cross-platform NIfTI format image viewer. It can load multiple layers of images, generate volume renderings and draw volumes of interest. It also provides dcm2nii for converting DICOM images to NIfTI format and NPM for statistics. MRIcron is a mature and useful tool, however you may want to consider the more recent MRIcroGL as an alternative.

Execution Options

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Specifications

Category:

Center of Mass, Regression, Clipping, Two Dimensional Display, Volume Rendering

License:

Development Status:

5 - Production/Stable/Mature

Domain:

Environment:

Console (Text Based), Other Environment, Win32 (MS Windows), Gnome, KDE

Intended Audience:

Natural Language:

Operating System:

MacOS, Windows, Linux

Programming Language:

Supported Data Format:

ANALYZE, DICOM, NIfTI-1

Associations

is part of:

is from the makers of:

MRIcroGL
MRIcroS

is installed on:

NITRC Computational Environment (NITRC-CE)

is required to run:

XFSL: An FSL toolbox
PANDA: a pipeline tool for diffusion MRI

works well with:

FSL
NIfTI
SPM
REST: a toolkit for resting-state fMRI
NiiStat
Clinical Toolbox for SPM

Recent Activity - Documents

PubMed Mentions documentation

Altered Effective Connectivity Within a Thalamocortical Corollary Discharge Network in Individuals With Schizophrenia. posted by NITRC Moderator on Dec 20, 2025

PubMed Mentions documentation

Plasma Profiles of Neuroglial Injury Biomarkers after Ischemic Stroke. posted by NITRC Moderator on Dec 20, 2025

PubMed Mentions documentation

Gerstmann's Syndrome and Limb Apraxia: A Single Case Study. posted by NITRC Moderator on Dec 20, 2025

PubMed Mentions documentation

Impact of processing and analysis methodology on thalamic susceptibility assessment in multiple sclerosis. posted by NITRC Moderator on Dec 20, 2025

PubMed Mentions documentation

Hippocampal subregions functional connectivity alterations in primary angle-closure glaucoma patients with cognitive dysfunction: a resting-state fMRI study. posted by NITRC Moderator on Dec 20, 2025

PubMed Mentions documentation

Impact of image preprocessing methods on MRI radiomics feature variability and classification performance in Parkinson's disease motor subtype analysis. posted by NITRC Moderator on Dec 20, 2025

PubMed Mentions documentation

Dynamic topological changes of the motor network after stroke. posted by NITRC Moderator on Dec 20, 2025

PubMed Mentions documentation

Spinal cord stimulation modulates post-synaptic inhibition improving neuromotor control of arm movement in people with chronic hemiparesis post-stroke. posted by NITRC Moderator on Dec 20, 2025

PubMed Mentions documentation

Cognitive Impairment in Temporal Lobe Epilepsy: Alterations in the Basal Forebrain Cholinergic System. posted by NITRC Moderator on Dec 20, 2025

PubMed Mentions documentation

Personalized neurometabolic signature predicts seizure outcomes of laser ablation in mesial temporal lobe epilepsy. posted by NITRC Moderator on Dec 20, 2025

Recent Activity - Forums

open-discussion forum

MRICRON overlap and descriptive statistics posted by VERA GRAMIGNA on Jan 22, 2025

open-discussion forum

Nudge drawings in superior and inferior directions with hotkeys posted by Cassia Manting on Jan 15, 2025

open-discussion forum

Citation posted by Chris Rorden on Jan 11, 2025

RE: Cropped image - after conversion posted by Chris Rorden on Dec 13, 2024

RE: Cropped image - after conversion posted by Belina Rodrigues on Dec 13, 2024

RE: Cropped image - after conversion posted by Chris Rorden on Dec 12, 2024

Cropped image - after conversion posted by Belina Rodrigues on Dec 12, 2024

open-discussion forum

RE: "Integer required: Multi-volume file, please select volume to view. [1..2]" and "undo" steps posted by Chris Rorden on Nov 17, 2024

open-discussion forum

"Integer required: Multi-volume file, please select volume to view. [1..2]" and "undo" steps posted by Hua Song on Nov 17, 2024

open-discussion forum

RE: MRICron .nii size file not supported posted by Chris Rorden on May 7, 2024

Recent Activity - News

Tool & Resource news

New release of MRIcron posted by Chris Rorden on Sep 18, 2019

Tool & Resource news

8/2014 versions released posted by Chris Rorden on Oct 28, 2014

Tool & Resource news

4/2010 versions released posted by Chris Rorden on Apr 1, 2010

Recent Activity - Files

mricron: 2-September-2019 (v1.0.20190902) release

MRIcron_macOS_Universal_X86_ARM.dmg posted by Chris Rorden on Dec 10, 2020

mricron: 2-September-2019 (v1.0.20190902) release

mricron_macOS.dmg posted by Chris Rorden on Sep 11, 2019

mricron: 2-September-2019 (v1.0.20190902) release

MRIcron_linux.zip posted by Chris Rorden on Sep 11, 2019

mricron: 2-September-2019 (v1.0.20190902) release

MRIcron_windows.zip posted by Chris Rorden on Sep 11, 2019

mricron: MRIcron/NPM/dcm2nii 2MAY2016 release

MRIcron_macOS.dmg posted by Chris Rorden on Oct 12, 2016

mricron: MRIcron/NPM/dcm2nii 2MAY2016 release

win.zip posted by Chris Rorden on Oct 12, 2016

mricron: MRIcron/NPM/dcm2nii 2MAY2016 release

lx.zip posted by Chris Rorden on Oct 12, 2016

mricron: MRIcroGL 12/2012 for Windows release

win.zip posted by Chris Rorden on Dec 27, 2012

mricron: MRIcroGL 12/2012 for OSX release

osx.zip posted by Chris Rorden on Dec 27, 2012

mricron: MRIcroGL 12/2012 for Linux 64 bit release

lx64.zip posted by Chris Rorden on Dec 27, 2012

Statistics more information

RRID: SCR_002403

Funding:

NIH-NIDCD R01DC009571

Documents: 1

PubMed Mentions: 2172

Forums: 529 messages in 2 forums

News Items: 3

Total Downloads: 946504

Registered: Aug 19, 2008

Organization: University of South Carolina

Center: McCausland Center for Brain Imaging

NeuroDebian Package: mricron

Assessments more information

User Reviews (48)

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DOCUMENTATION:

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