Hello,

I thought I'd add to this thread as my question is quite similar...

I'd like to extract the ROI-ROI correlation values from a second level analysis, that correspond to what is used to determine the threshold in the graph-theory window of the gui.

Currently I can get the correlation values for a particular ROI by doing:

.h i.e. the effect size or i.e. averaging over the single-subject fisher Z values, which I believe should give the same result.

I thought that this would be the value that is used to determine whether an edge passes the threshold set by the correlation coefficient value in the graph theory window, but it doesn't appear to:

e.g. I have an edge between IPS and PFC with a correlation/effect size of 0.59, yet if I set the threshold up to 0.62 I still see the edge appear in the figure.

Is it possible to get the ROI-ROI correlation values that are compared against the correlation coefficient threshold that is set by the user in the graph theory window of the GUI? Or how is this computed?

I think the toolbox is great - many thanks!

Ben