CBICA: GLioma Image SegmenTation and Registration (GLISTR)

GLioma Image SegmenTation and Registration (GLISTR) is a software package designed for simultaneously segmenting brain scans of glioma patients and registering these scans to a normal atlas.

Some typical applications of GLISTR include,

Labeling entire brain regions of glioma patients;
Mapping gliomas into the healthy atlas space;
Estimating parameters of the tumor growth model.

GLISTR is implemented as a command-line tool. It is semi-automatic and requires minimal user initializations. Users could use the visual interface called BrainTumorViewer to easily make initializations and a script for the execution. As a results, GLISTR will output a label map, a mapping between atlas and input, tumor parameters, etc.

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