Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1022772
2
MRIcron
989038
3
BIDScoin
775655
4
ITK-SNAP
471183
5
FCP/INDI PRIVATE SITE
388963
6
IIT Human Brain Atlas (v.5.0)
228746
7
CONN : functional connectivity toolbox
210507
8
fMRI-CPCA
207863
9
MRIcroGL
207861
10
1000 Functional Connectomes Project
184474
11
BrainNet Viewer
123299
12
DTI-TK
97616
13
BXH/XCEDE Tools
95838
14
NIDB - Neuroinformatics Database
91419
15
IBSR
82758
16
age-ility
82581
17
BioImage Suite
81739
18
Multi-Modal MRI Reproducibility Resource
77116
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
74348
20
Solar Eclipse Imaging Genetics tools
71310
21
JIST: Java Image Science Toolkit
68399
22
WFU_PickAtlas
66847
23
BrainFlow
66198
24
GIFTI
55816
25
PANDA: a pipeline tool for diffusion MRI
53869
26
NITRC Computational Environment (NITRC-CE)
52654
27
The Neuro Bureau
51768
28
3T DWI test-retest reliability dataset
48211
29
Functional Imaging BIRN
47890
30
TOADS-CRUISE Brain Segmentation Tools
42688
31
fNIRS Data Analysis Environment
42189
32
Multimodal Visual Consciousness Study Dataset
41834
33
Generalized PPI Toolbox
40582
34
EEGLAB
40083
35
QuickNII - Serial section aligner to volumetric atlases
38135
36
FreeSurfer
37988
37
BrainMap Database
37216
38
Network-Based Statistic (NBS)
36014
39
MIITRA atlas
34975
40
NeuroImaging Analysis Kit (NIAK)
33454
41
UNC 0-1-2 Infant Atlases
32632
42
Brain Biomechanics Imaging Resources
31531
43
Homer2
29911
44
DWI/DTI Quality Control Tool: DTIPrep
28499
45
TumorSim
28067
46
NeuroDebian
27614
47
Graph Theory GLM (GTG) MATLAB Toolbox
27411
48
NYU CSC TestRetest
27400
49
Anima
27073
50
BrainVisa Morphologist extensions
26974
51
XNAT Extras
25260
52
Melbourne Subcortex Atlas
25246
53
CBS High-Res Brain Processing Tools
24863
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
24316
55
4D UNC Neonatal and Infant Cortical Surface Atlases
23506
56
Neuroimaging Made Easy Blog
22783
57
SPHARM-PDM Toolbox
22370
58
SRI24 Atlas: Normal Adult Brain Anatomy
20798
59
BrainMask Volume Processing Tool
20216
60
Standard Amygdalar fMRI Probe Tasks
19995
61
Data Format Tools
19685
62
Vaa3D and Vaa3D-Neuron
19526
63
Fast Nonlocal Means for MRI denoising
19482
64
Mango
19468
65
CANDI Neuroimaging Access Point
19427
66
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
19336
67
Surf Ice
19027
68
Automatic Registration Toolbox
18737
69
Group ICA Toolbox (GIFT and EEGIFT)
18439
70
MITK Diffusion
18414
71
3DSlicerLupusLesionModule
18097
72
GRETNA
17670
73
Awake Rat rsfMRI Database
17307
74
Talairach Daemon
17227
75
Subject Order-Independent Group ICA
17162
76
MRtrix
16842
77
ShapePopulationViewer
16825
78
DCP：Diffusion Connectome Pipeline
16776
79
Diffusion Toolkit / TrackVis
16770
80
Freesurfer fsaverage
16556
81
Spatially Constrained Parcellation
16509
82
Hammer And WML Modules for 3D Slicer
16468
83
Computational Morphometry Toolkit (CMTK)
16314
84
3D Slicer
16281
85
BrainSuite
16232
86
Human Imaging Database (HID)
16171
87
ENIGMA-DTI pipeline
15806
88
AutoSeg
15574
89
ANDA
14847
90
MARS (Multi-Atlas Robust Segmentation)
14785
91
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14738
92
FSL
14374
93
Brainstorm
13846
94
Artifact Detection Tools (ART)
13655
95
NeuroDOT
13529
96
dcm2nii
13263
97
Nighres
12991
98
Maps4Mipav (Exploratory JIST)
12966
99
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
12904
100
ABSORB for groupwise registration
12900