Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.66%
  21000 Functional Connectomes Project97.06%
  3ITK-SNAP95.76%
  4BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6CBICA: CLASSIC93.29%
  7rapidtide92.34%
  8MRIcroGL92.03%
  9Rosetta Bit90.88%
  10DTI-TK90.77%
  11Functional Mixed Processes Models89.05%
  12Group Sparse Canonical Correlation Analysis88.76%
  13Multi-Modal MRI Reproducibility Resource88.49%
  14PANDA: a pipeline tool for diffusion MRI88.45%
  15MPScope88.22%
  16Prospective Acquisition CorrEction (PACE) Resting State EPI data87.52%
  17TOADS-CRUISE Brain Segmentation Tools86.76%
  18BrainNet Viewer86.34%
  19Hadoop for data colocation85.39%
  20JIST: Java Image Science Toolkit85.03%
  21CONN : functional connectivity toolbox84.89%
  22CBICA: PREDICT84.68%
  23Kurtosis Imaging Network - KIN84.52%
  24BRAINSTestData84.43%
  25CBICA: Brain Tumor Modeling - Coupled Solver84.40%
  26ITools Resourceome84.16%
  27Functional Imaging BIRN84.04%
  28CBICA: Brain Anatomy Simulator83.98%
  29Local Label Learning (LLL) Segmentation83.13%
  30HD Neuro-Informatics83.02%
  31Infant Macaque MRI And DTI Templates82.26%
  32Lumina LP- 400 Response System82.21%
  33Philips Users Community82.17%
  34HERMES81.06%
  35NUTMEG80.78%
  36ODIN80.52%
  37NeuroDebian80.45%
  38Stochastic Tractography System80.43%
  39TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA80.31%
  40Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  41fMRIstat79.79%
  42Vaa3D and Vaa3D-Neuron79.68%
  43Bayesian longitudinal low-rank regression79.68%
  44map3d79.67%
  45Turbo-BrainVoyager79.64%
  46DSI Studio79.25%
  47Solar Eclipse Imaging Genetics tools79.10%
  483T DWI test-retest reliability dataset79.07%
  49University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software79.00%
  50Seg3D78.68%
  51Ogles - OpenGL/OIV Stereotactic Tool78.64%
  52UNC/Utah NAMIC DTI Fiber Analysis Framework78.64%
  53Umeå Brain Arteries78.64%
  54iView X MRI-LR - Eye Tracking for fMRI78.64%
  55WFU_PickAtlas78.53%
  56L-Neuron78.49%
  57XCEDE Schema78.35%
  58MITK Diffusion78.32%
  59BioSig78.08%
  60Curry 777.81%
  61GazeReader77.81%
  62Functional ROI Atlas77.78%
  63BluePyOpt77.70%
  64MASIMatlab77.69%
  65SurfStat77.60%
  66CBRAIN77.49%
  67GPU based affine registration77.46%
  68FieldTrip77.34%
  69Biomag Discussion Group on Yahoo77.32%
  70VALiDATe29 squirrel monkey brain atlas77.21%
  71XNBC77.14%
  72GIFTI77.06%
  73Brede Toolbox77.01%
  74EEG Toolbox76.93%
  75HCP Harvard/MGH-UCLA76.85%
  76EEProbe76.84%
  77epi-example-dicom76.63%
  78E-Prime Extensions for fMRI76.62%
  79National Database for Autism Research76.52%
  80TurtleSeg76.48%
  81MindSeer76.42%
  82EEGLAB76.30%
  83COINS76.26%
  84EONS76.25%
  85Insight Toolkit76.17%
  86Spatial Analysis 3D76.15%
  87ASA - Advanced Source Analysis76.11%
  88NIPY Diffusion Imaging Analysis76.10%
  89Brain Products' EEG/fMRI Hardware76.05%
  90PING75.85%
  91Cytoseg75.83%
  92HCP WU-Minn Consortium75.77%
  93In vivo MEMRI-based Rat Brain Atlas75.71%
  94NICE-SIGN75.68%
  95MNI Macaque Atlases75.65%
  96GesTr75.60%
  97cmrep75.59%
  98ParaView75.52%
  99PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  100Framework for Open Programmatic Access75.38%
  101LIBEEP75.38%
  102NIPY File IO75.18%
  103Micro-Manager75.17%
  104CBICA: PORTR75.13%
  105A robust method for correcting partial volume effect in ASL data75.12%
  106NFT: Neuroelectromag Forward Modeling75.04%
  107CBICA: ODVBA74.97%
  108Brainsight74.90%
  109Faceted Search Based Ontology Visualizer74.89%
  110INCF Neuroimaging Data Sharing74.89%
  111Net Station74.81%
  112UCLA Multimodal Connectivity Database74.77%
  113FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  114brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  115EEGVIS74.66%
  116ProbabilisticBiasCorrection74.60%
  117I/OWA 374.57%
  118dtiBrainScope74.54%
  119DICOM_UploadGUI74.52%
  120Connectome File Format (CFF)74.48%
  121APERTURE74.44%
  122mask_explorer74.44%
  123Bisque74.41%
  124BrainLiner.jp74.34%
  125Advanced Normalization Tools74.32%
  126nitime74.27%
  127INVIZIAN74.26%
  128Anatomist74.21%
  129NordicNeuroLab74.14%
  130XCEDE Schema74.09%
  131Presentation74.05%
  132connectir74.03%
  133NC-IGT Fast Imaging Library74.00%
  134Age Related Atrophy Dataset74.00%
  135ERPLAB73.92%
  136VIEWPixx73.91%
  137CANDI Share: Schizophrenia Bulletin 200873.91%
  138Triangle BioSystems73.89%
  139MINC - Medical Image NetCDF73.87%
  140BrainMaps.org73.86%
  141Pydicom73.82%
  142The fMRI Data Center73.82%
  143Surf Ice73.81%
  144PySurfer73.76%
  145XNAT Extras73.64%
  146Neuroimaging Made Easy Blog73.47%
  147S3DL Sparse Dictionary Learning based MR Image and Lesion Segmentation73.46%
  148Statistics Online Computational Resource73.45%
  149TARQUIN MRS analysis package73.40%
  150NIRx NIRS Neuroimaging73.39%
  151PyNIfTI73.36%
  152COGNISION (TM) System73.25%
  153fMRI-CPCA73.25%
  154NITRC Community73.25%
  155OpenElectrophy73.22%
  156NIPY Community73.20%
  157Generalized PPI Toolbox73.02%
  158NeuroScope72.95%
  159ASL data processing tool box72.94%
  160MagPro Magnetic Stimulator (TMS)72.94%
  161Lipsia72.87%
  162MedINRIA72.87%
  163Mouse Connectome Project (MCP)72.79%
  164Fiber Tracking Tool72.78%
  165Fiber-tracking based on Finsler distance72.78%
  166SumsDB Database72.73%
  167Fiber Optic Button Response System72.72%
  168CUDA accelerated spherical model M/EEG72.66%
  169False Discovery Rate Weighted72.64%
  170DATAPixx72.63%
  171OpenFMRI72.62%
  172DONE: Detection of Outlier NEurons72.55%
  173CBICA: Datasets72.49%
  174ArtRepair for robust fMRI72.45%
  175WhiteText - annotated neuroscience text72.44%
  176ENIGMA-DTI pipeline72.37%
  177NIPY Structural and Functional Analysis72.36%
  178CLEAVE: Large Data Set ANOVA72.21%
  179scikit-learn72.17%
  180Mag Design and Engineering72.10%
  181Working Memory Trainer72.06%
  182PPMI72.00%
  183dcm2nii71.98%
  184SFMProject71.92%
  185vuTools71.88%
  186Hitachi Optical Topography System71.88%
  187BRAINSConstellationDetector71.85%
  188MRI Digital Projection System71.59%
  189ShapeViewer71.52%
  190Normative Independent Component Analysis71.48%
  191Computational Morphometry Toolkit (CMTK)71.46%
  192LDDMM71.43%
  193fNIR Devices71.38%
  194OpenMEEG71.38%
  195Data Format Tools71.28%
  196TORTOISE71.25%
  197Network-Based Statistic (NBS)71.23%
  198NeuroElf71.23%
  199ADNI71.16%
  2004D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  201COST71.02%
  202GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity70.89%
  203NeuroSynth70.83%
  204Viking Viewer for Connectomics70.74%
  205SR Research EyeLink Eye Trackers70.67%
  206BioImage Suite70.63%
  207LONI Provenance Editor70.63%
  208CoCoMac Brain Connectivity Database70.62%
  209MazeSuite70.54%
  210BrainBrowser70.49%
  211Pipeline Neuroimaging VirtualEnvironment70.41%
  212Nilearn70.38%
  213Biomedical Informatics Research Network70.34%
  214Disease State Prediction70.12%
  215Open Connectome Project70.04%
  216REST: a toolkit for resting-state fMRI69.97%
  217OEI fMRI compatible olfactometer69.96%
  218Source Information Flow Toolbox69.88%
  219NCANDA: Data Integration Component69.76%
  220Journals69.76%
  221Fast Fourier Transform (FFT) JavaLibrary69.75%
  222Laboratory of Neuro Imaging (LONI)69.74%
  223IMOD - 3D Reconstruction and Analysis69.72%
  224BrainVisa Morphologist extensions69.55%
  225Mouse BIRN69.44%
  226BrainGraph Editor 1.0 Beta69.44%
  227LIMO EEG69.17%
  228Center for Computational Biology (CCB)69.15%
  229BrainVISA69.14%
  230FADTTSter68.99%
  231Synchronized Histological Image View Arc68.86%
  232cbiNifti: Matlab/Octave Nifti library68.82%
  233Analyze68.78%
  234BrainMap Database68.78%
  235DPARSF68.68%
  236Textpresso - literature search engine68.67%
  237NeuroshareLibrary68.65%
  238SMAC: Spatial Multi-category Angle-based Classifier68.62%
  239E-Prime 3.068.58%
  240PST MRI Simulator68.50%
  241UNC 0-1-2 Infant Atlases68.35%
  242PsychoPy68.14%
  243The Neuro Bureau68.12%
  244CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  245Grantees Meeting for NITRC68.08%
  246Create DWI Atlas67.98%
  247BrainMagix SPM Viewer67.70%
  248BioMesh3D67.70%
  249Multiscale Weighted Principal Component Regression67.66%
  250NeuroWeb - NeuroImaging Database67.63%
  251Homer267.60%
  252NeuriteTracer67.45%
  253MultiTracer version 267.40%
  254Augmented Reality Mirror67.37%
  255dinifti67.32%
  256Low Resolution Brain Electromagnetic Tomography67.25%
  257N2A67.19%
  258The Grid Code Analysis Toolbox - GridCAT67.00%
  259Brede Wiki67.00%
  260SCIRun66.94%
  261Rockland Download Link Script66.78%
  262MEGSIM66.69%
  263Mango66.53%
  264NIPY Pipeline and Interfaces66.47%
  265CAMINO-TRACKVIS66.47%
  266HDBIG66.40%
  267BrainMask Volume Processing Tool66.27%
  2683D Slicer66.19%
  269ImageVis3D66.18%
  270fMRI Results Comparison Library65.84%
  271Waxholm Space Atlas of the Sprague Dawley Rat Brain65.82%
  272Spatially Constrained Parcellation65.82%
  273Books65.58%
  274Signed Differential Mapping65.53%
  275Group Level Imputation of Statistic Maps65.49%
  276Connectome Viewer65.38%
  277SCRalyze65.38%
  278ShapeTools65.31%
  279HFH_DTI_DATA65.30%
  280MRBrainS Evaluation Framework / Challenge65.15%
  281PICASSO skull stripping tool65.14%
  282IIT Human Brain Atlas (v.4.1)65.09%
  283ExPosition Packages65.09%
  284MRI_CVPR65.08%
  285NIREP64.96%
  286MARS (Multi-Atlas Robust Segmentation)64.70%
  287Parkinson's Disease Discovery Database64.60%
  288Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  289Diffusion Warp64.08%
  290Non-rigid groupwise registration method63.75%
  291Web Interfaces for Multiscale Images63.57%
  292MarsBaR region of interest toolbox63.54%
  293Hammer And WML Modules for 3D Slicer63.48%
  294Diffusion Toolkit / TrackVis63.47%
  295Temporal-lobe.com63.32%
  296NeoSegPipeline63.20%
  297Brain Entropy in space and time (BEst)63.14%
  298FSL extensions63.14%
  299Medical Image Visualization and Analysis63.06%
  300AFNI63.05%
  301CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)63.03%
  302Talairach Daemon62.70%
  303Neuroimaging Data Access Group62.68%
  304Waxholm Space Atlas of the C57BL/6J Mouse Brain62.66%
  305fNIRS Data Analysis Environment62.64%
  306MRtrix62.45%
  307The Cognitive Atlas62.43%
  308NeuroImaging Analysis Kit (NIAK)62.36%
  309Tractography based on Riemannian geodesics and tensor adjugates62.21%
  310SPM for fNIRS toolbox62.01%
  311Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration61.88%
  312Mindboggle-101 manually labeled brains61.81%
  313Monte Carlo Simulation Software: tMCimg61.67%
  314Neural ElectroMagnetic Ontologies61.65%
  315PubBrain Database61.64%
  316MoTrak - Head Motion Tracking System61.63%
  317Rodent Cortical Thickness Analysis61.39%
  318CBICA: PHI Estimator61.34%
  319CIGAL61.11%
  320Mesh-based Monte Carlo (MMC)60.92%
  321MRI denoising60.63%
  322CBICA: MOE60.58%
  323Automatic Registration Toolbox60.57%
  324Neuroinformatics - The Journal60.36%
  325CBICA: DTIDROID60.27%
  326SPHARM-PDM Toolbox60.26%
  327Zebrafish heart segmentation60.21%
  328CBICA: GONDOLA60.17%
  329Monte Carlo eXtreme (MCX)60.16%
  330IATR60.11%
  331Human Imaging Database (HID)60.08%
  332GRETNA60.00%
  333IBSR59.98%
  334BrainVoyager59.88%
  335UNC-Wisconsin Neurodevelopment Rhesus MRI Database59.66%
  336Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  337Neoseg59.61%
  338iso2mesh59.41%
  339Functional Connectivity Community59.20%
  340BRAINSSurfaceStats59.18%
  341Progression Score Model Toolkit59.14%
  342TAPIR58.98%
  343Statistical Methods for Manifold-valued Data58.97%
  344NIRAL Utilities58.71%
  345CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)58.71%
  346ATPP: Automatic Tractography-based Parcellation Pipeline58.26%
  347Scalable Brain Atlas58.15%
  348Anima58.04%
  349Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  350pyxnat57.94%
  351Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  352FSL57.94%
  353BRAINSTracer57.82%
  3543DSlicerLupusLesionModule57.36%
  355BRAINSCortex57.21%
  3562008 MICCAI MS Lesion Segmentation Challenge57.14%
  357BiofilmQuant57.09%
  358VectorValuedHistogramNormalizer55.65%
  359BraTumIA (Brain Tumor Image Analysis)55.62%
  360AutoTract55.51%
  361NITRC Enhanced Services55.39%
  362Spinal Cord Toolbox55.13%
  363Center for Functional Neuroimaging Tech55.10%
  364International Imaging Genetics Conference54.88%
  365Subject Order-Independent Group ICA54.52%
  366Draw3D and Meshinator54.46%
  367Group ICA Toolbox (GIFT and EEGIFT)54.43%
  368DTIProcess ToolKit54.23%
  369TumorSim53.95%
  370ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis53.76%
  371VMTK in 3D Slicer53.66%
  372NIfTI53.58%
  373MONSTR Multi Contrast Brain Stripping53.45%
  374MCIC- schizophrenic and matched control data53.00%
  3753d Brain Atlas Reconstructor52.90%
  376BrainVoyager Brain Tutor52.82%
  377Artifact Detection Tools (ART)52.51%
  378VANDPIRE52.38%
  379C-PAC52.38%
  380ANTsR52.31%
  381Licensing52.27%
  382STAMP Atlases for Brain Abnormality Detection52.19%
  383Generation R Pediatric MRI Resources52.13%
  384SpineSegmentation module for 3DSlicer51.99%
  385EEG human categorization data51.96%
  386LONI Pipeline Environment51.79%
  387MRI Defacer51.55%
  388Parallel Stochastic Ion Channel Simulator51.43%
  389CBS High-Res Brain Processing Tools50.85%
  390Diffusional Kurtosis Estimator50.70%
  391BRAINSMush50.66%
  392A probabilistic subcortical atlas for PD50.62%
  393CANDI Neuroimaging Access Point50.61%
  394factory_t1_dti50.47%
  395Lightweight Data Pipeline50.41%
  396ABSORB for groupwise registration50.35%
  397Pipeline system for Octave and Matlab50.32%
  398shapeAnalysisMANCOVA - SPHARM tools49.87%
  399SLIC: a whole brain parcellation toolbox49.81%
  400NYU CSC TestRetest49.73%
  401ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  402ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  403Maps4Mipav (Exploratory JIST) 49.31%
  404Mid-Space-Independent Deformable Image Registration49.30%
  405MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  406Multiple Correlation Function Tool48.96%
  407Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations48.86%
  408Epsilon Radial Networks48.81%
  409Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  410GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  411SIVIC48.42%
  412Magnetic Resonance Angiography Atlas Dataset48.30%
  413Conferences, Workshops and Meetings48.24%
  414BXH/XCEDE Tools48.05%
  415Orientation Distribution Function in Constant Solid Angle (CSA-ODF)47.79%
  416ANIMA47.79%
  417Infant Functional Atlas47.68%
  418GenGen47.52%
  419Single-subject Resting state fMRI Reproducibility Resource47.35%
  420BRAINSFit47.32%
  421fNIRS Research Database47.26%
  422FBIRN Image Processing Scripts (FIPS)47.17%
  423The Cancer Imaging Archive (TCIA)47.14%
  424NODDI Matlab Toolbox47.11%
  425Task Independent Fluctuations Discussion46.98%
  426Mixed Effect Model of Genetic-Set and Environment Interaction46.67%
  427Graph Theory GLM (GTG) MATLAB Toolbox46.67%
  428SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation46.64%
  429MRI Dataset for Hippocampus Segmentation46.59%
  430Local Manifold Learning for Multi-atlas segmentation46.38%
  431Simple Medical Imaging Library Interface (SMILI)45.95%
  432AHEAD45.91%
  433BrainSuite45.88%
  434BetA-Series COrrelation45.78%
  435Wisconsin White Matter Hyperintensities Segmentation Toolbox45.75%
  436FreeSurfer45.54%
  437DWI/DTI Quality Control Tool: DTIPrep45.52%
  438Diffusion MRI @ DKFZ Heidelberg45.52%
  439Gibbsconnectome45.43%
  440PESTICA & SLOMOCO: physio and motion correction tools45.43%
  441MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data45.11%
  442Statistical Methods for Heterogeneous Neuroimaging Data45.03%
  443Vervet Probabilistic Atlas44.95%
  444Best Practices for Software Development44.91%
  445CutNII - Custom-angle slicer for brain atlas volumes44.89%
  446Spanish Resting State Network44.84%
  447S-rep Fitting, Statistics, and Segmentation44.76%
  448Optseq - fMRI Event Scheduler44.71%
  449NeuroImage Field-of-View Normalization Tool44.45%
  450Bayesian Connectivity Analysis software (BCA)44.44%
  451Imeka Tractography Service44.35%
  452MATLAB Tutorial on Diffusion Tensor MRI44.23%
  453Phoneme-Syllable Tsinghua University CS&T 201143.96%
  454Robust Brain Extraction (ROBEX)43.93%
  455GIMME (Group Iterative Multiple Model Estimation)43.90%
  456Longitudinal Multiple Sclerosis Lesion Imaging Archive43.83%
  457Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function43.71%
  458EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  459In vivo MEMRI-based Mouse Brain Atlas43.68%
  460Preprocessed Connectomes Project43.46%
  461QCQP43.44%
  462Human Connectome Project (HCP)43.41%
  463Multicomponent T2 estimation with stimulated echo correction43.38%
  464SRI24 Atlas: Normal Adult Brain Anatomy43.25%
  465Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  466NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space42.61%
  467Brainnetome DiffusionKit42.56%
  468BRAINSROIAuto42.50%
  469Graphtools42.47%
  470FMRIpower42.41%
  471Brainnetome fMRI toolkit42.28%
  472NIDB - Neuroinformatics Database42.27%
  473INSTAR (Infant Joint Segmentation and Registration)42.10%
  474Brain Connectivity Toolbox42.01%
  475ABC (Atlas Based Classification)41.89%
  476ShapeComplexityIndex41.87%
  477isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab41.52%
  478YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  479Brainance DTI Module41.33%
  480Atlasing of the basal ganglia41.27%
  481HAMMER: Deformable Registration41.21%
  482Cluster reporter41.03%
  483Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  484iBEAT40.92%
  485Neurolucida40.86%
  486Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)40.80%
  487SPM40.64%
  488CBFBIRN40.45%
  489REX40.42%
  490Stereo Investigator40.09%
  491Emory-UNC Developmental Macaque Structural and DTI Atlases39.98%
  4927T Structural MRI scans ATAG39.96%
  493age-ility39.48%
  494POS2SPM39.14%
  495DTI Atlas Builder39.04%
  496XNAT39.03%
  497Quantitative Diffusion Tools39.01%
  498ICA Components from Kessler, et al, JAMA Psychiatry 201638.83%
  499DTI-TEMPLATE-RHESUS-MACAQUES38.82%
  500SegEditing38.76%
  501Functional Analysis of Diffusion Tensor38.64%
  502FiberViewerLight38.56%
  503Fast Nonlocal Means for MRI denoising38.43%
  504GLIRT37.60%
  505VAMCA Cortical Meta-analysis Toolbox37.53%
  506LONI Debabeler37.24%
  507BrainCSI37.02%
  508DTI-Reg36.47%
  509The De-identification Toolbox - A data sharing tool for neuroimaging studies36.44%
  510MRTool36.08%
  511JIST Resources for Algorithm Development35.97%
  512JIP fMRI Analysis Toolkit35.58%
  513MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis35.57%
  514MriWatcher35.48%
  515Stark Cross-Sectional Aging35.22%
  516AutoSeg35.11%
  517AMILab35.01%
  518RapidArt34.88%
  519Task-based fMRI atlases34.71%
  520Computational Anatomy Toolbox - CAT34.70%
  521GTRACT34.29%
  522BrainSolution34.12%
  523CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.34.08%
  524cPPI Toolbox for fMRI33.81%
  525MABMIS: Multi-Atlas Based Segmentation33.79%
  526PyMVPA33.13%
  527Brainscape32.98%
  528masked ICA (mICA) Toolbox32.79%
  529DRAMMS Deformable Image Registration Toolbox32.74%
  530CIFTI Connectivity File Format32.45%
  531DTI denoising32.30%
  532HFH_DTI_TLE_TOOLS32.08%
  533MRIcroS31.95%
  534High-quality diffusion-weighted imaging of Parkinson's disease31.94%
  535Diffusion Tractography with Kalman Filter31.73%
  536DICOMConvert31.72%
  537ShapeWorks31.68%
  538peak_nii31.64%
  539Slicer3 Example Modules31.55%
  540DicomBrowser31.51%
  541Cerebellar White Matter Atlas31.50%
  542Functional Connectivity Analysis Tool for near-infrared spectroscopy data31.20%
  5433-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood31.17%
  544ADJUST - EEG Automatic Artifact Removal31.06%
  545Deformable Template Model for Brain Analysis31.05%
  546GIMIAS30.79%
  547HistoloZee - 3D histology reconstruction and co-registration with MRI30.70%
  548HAMMER Suite30.41%
  549Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  550Templates for In vivo Mouse Brain30.09%
  551Image Synthesis30.08%
  552PHYCAA+: adaptive physiological noise correction for BOLD fMRI30.03%
  553MRI Studio30.02%
  554BASH4RfMRI29.93%
  555Program for optimal design of blocked fMRI experiments29.83%
  556Manually Labeled MRI Brain Scan Database29.77%
  557Paradigm29.74%
  558GAMBIT29.74%
  559MIPAV29.59%
  560NPTK29.57%
  561Ultra-high field atlas for DBS planning29.35%
  562DFBIdb29.33%
  563ASHS: Automatic Segmentation of Hippocampal Subfields29.23%
  564SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  565BRAINSDemonWarp29.19%
  566NIH Pediatric MRI Data Repository29.05%
  567fMRI Grocer28.81%
  568NITRC GForge Extensions28.71%
  569NIH-CIDI Lung Segmentation Tool28.43%
  570Numerical Fibre Generator (NFG)28.34%
  571Group Information Guided ICA28.29%
  572SkullStrippingToolkit28.22%
  573Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)28.07%
  574R-package for adaptive DWI analysis27.98%
  575UNC Human Brain Atlas27.91%
  576HI-SPEED Software Packets27.91%
  577Hierarchical Functional Networks in Resting State fMRI27.87%
  578Colin 3T/7T High-resolution Atlas27.85%
  579Corpus Callosum Thickness Profile Analysis Pipeline27.63%
  580Brainnetome Atlas Viewer27.63%
  581A label fusion using CRF27.43%
  582Clinical Toolbox for SPM27.38%
  583Template Image Processing Library27.30%
  584SPHARM-MAT27.13%
  585C8: Corpus Callosum Computations27.10%
  586DW-MRI registration in FSL27.01%
  587ProCTSeg26.94%
  588MisterI26.85%
  589Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)26.82%
  590DTI Fiber Tract Statistics26.69%
  591eConnectome26.33%
  592ARCTIC26.33%
  593MR Connectome Automated Pipeline (MRCAP)26.10%
  594ShapePopulationViewer26.03%
  595Multi-fiber Reconstruction from DW-MRI25.93%
  596MeshValmet: Validation Metric for Meshes25.88%
  597minc-toolkit25.84%
  598CleanLine25.77%
  599Robust Biological Parametric Mapping25.72%
  600BrainVoyager Viewer25.65%
  6013DMeshMetric25.62%
  602Convert MNI coordinates to or from XYZ25.52%
  603BrainParser25.48%
  604Gradient Non-linearity Unwarping Tool25.13%
  6053T MRI data set on structural brain-behavior correlations25.08%
  606Standard Amygdalar fMRI Probe Tasks24.99%
  607WFU_Pipeline24.92%
  608FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.77%
  609GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data24.63%
  610MIView24.56%
  611LORIS24.52%
  612MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation24.44%
  613Automatic Segmentation Tool Adapter24.35%
  614Finsler tractography module for Slicer24.11%
  615MASI Label Fusion24.11%
  616TetraMetrix23.98%
  617WFU_BPM23.86%
  618volBrain: online MRI segmentation23.70%
  619MNE - Minimum Norm Current Estimates23.48%
  620R-package for adaptive fMRI analysis23.47%
  621Simulated Diffusion-Weighted Datasets23.45%
  622SnPM23.41%
  623Functional Regression Analysis of DTI23.20%
  624Morphometry BIRN23.14%
  625aBEAT23.10%
  626MGH Neonatal/Pediatric ADC atlases23.09%
  627B0 and eddy current correction for DTI23.07%
  628RFT_FDR22.92%
  629Spatial Statistical Parametric Mapping22.84%
  630Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising22.68%
  631Elastic Net-based Parcellation (ENPA)22.61%
  632CCSeg - Corpus Callosum Segmentation22.32%
  633Inter-Group Registration Toolbox22.27%
  634Corpus callosum and brain segmentations from ABIDE database22.27%
  635JHU Proj. in Applied Medical Imaging22.20%
  636Web Game for Collaborative Labeling22.15%
  637OASIS22.09%
  638Brainstorm22.03%
  639POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  640Notion ResearchPACS21.98%
  641Camino21.88%
  642DOTS WM tract segmentation21.85%
  643Iterative dual-regression with sparse prior21.85%
  644Estimating Functional Brain Network based on Modularity Prior21.77%
  645A joint sparse partial correlation method for estimating group functional networks21.77%
  646xjView, a viewing tool for SPM21.77%
  647Diffusion MRI - In-vivo and Phantom Data21.69%
  648LONI Inspector21.66%
  649PICSL Multi-Atlas Segmentation Tool21.46%
  650Slicer3 Module Rician noise filter21.38%
  651NiiStat21.12%
  652Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data21.10%
  6534D Atlas Construction21.08%
  654Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation21.05%
  655VoxBo21.00%
  656SOCK20.87%
  657BTK : Baby Brain Toolkit20.79%
  658cortex20.75%
  659freesurfR20.36%
  660DentalTools20.18%
  661Parallel Graph-theoretical Analysis Toolkit20.14%
  662STAPLE19.93%
  663Efficient Permutation Testing19.88%
  664MeshGen - Surface meshes from volumetric segmentation data19.82%
  665NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.71%
  666Generalized Covariance Analysis (gCVA)19.63%
  667MOCA19.60%
  668GAMMA19.58%
  669imcalc: SPM batch image calulator19.35%
  670INIA19 Primate Brain Atlas19.27%
  671UManitoba-JHU Functionally-Defined Human White Matter Atlas19.18%
  672Fusion ICA Toolbox (FIT)19.13%
  673Hitachi2nirs19.02%
  674ALVIN - Lateral Ventricle Segmentation18.88%
  675Connectome Workbench18.86%
  676NIRx2nirs: A NIRx to .nirs data converter18.80%
  677AURA tools : AUtomated Retinal Analysis tools18.80%
  678Randomized Denoising Autoencoders for Neuroimaging18.77%
  679DW-MRI Random Walk Simulator18.63%
  680BrainNetworkConstructionAnalysisPlatform18.62%
  681FIV18.59%
  682Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.57%
  683AtlasConstructionToolkit18.54%
  684Displacement Field Viewer18.49%
  685Landman NeuroImaging Tools18.24%
  686Resource Ontology Discussion Group18.12%
  687Penn Hippocampus Atlas18.07%
  688NVM17.66%
  689SINOMO (SIngular NOde MOtifs)17.65%
  690CMFreg17.62%
  691MouseBIRN Atlasing Toolkit (MBAT)17.55%
  692CBICA: WMLS (White Matter Lesion Segmentation)17.35%
  693Diffusion MRI Tool17.05%
  694SPM_SS - fMRI functional localizers17.05%
  695XFSL: An FSL toolbox16.99%
  696fMRI Classification in R16.98%
  697BCILAB16.90%
  698Automated Image Registration (AIR)16.75%
  699Brain Segmentation Testing Protocol16.53%
  700resting-state pediatric imaging template16.48%
  701Single-index Varying Coefficient Model for Functional Responses16.45%
  702MIAS Registration Toolkit16.33%
  703Wavelet-based Image Fusion15.94%
  704ValMap: simple statistical mapping tool15.86%
  705vis: SPM Visualized Statistics toolbox15.77%
  706CoCoMac-Paxinos3D viewer15.74%
  707Jim15.67%
  708Segmentation Validation Engine15.51%
  709NeuroLens15.38%
  710MGDM: Multi Geometric Deformable Model15.32%
  711NIRS-SPM15.31%
  712TractoR: Tractography with R15.29%
  713IDeA Lab brain image processing suite15.28%
  714DICCCOL predictor (v0.1)15.18%
  715Internet Brain Volume Database (IBVD)15.14%
  716DIAMOND15.11%
  717Serotonin Transporter HighResolution PET Template14.96%
  718Using Make for Neuroimaging Workflow: Manual and Examples14.91%
  719CamBA14.59%
  720MRI Neuroanatomy Labeling Services14.50%
  721Subject Library14.45%
  722The Brain Coactivation Map14.45%
  723CBICA: COMPARE14.40%
  724Brainwaver14.36%
  725Measure Projection Toolbox (MPT)14.34%
  726Level-set Segmentation for Slicer314.13%
  727LONI De-identification Debablet14.06%
  728Cluster Extent Correction13.99%
  729VarTbx – Variability Toolbox13.80%
  730Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI13.72%
  731Microstructural correlation toolbox13.63%
  732Kymata Atlas13.58%
  733NeuroPub Visualizer13.55%
  734BrainDecoderToolbox13.51%
  735BrainFX13.43%
  736Wisconsin Cortical Thickness Analysis (CTA) Toolbox13.37%
  737Pythagorean Displacement and Motion Regressors13.17%
  738mach2dat13.14%
  739mach2qtl13.03%
  740N3 - MINC B0 nonuniformity correction12.85%
  741BrainVision Analyzer12.78%
  742SVV12.48%
  743fanDTasia Java Applet: DT-MRI Processing12.42%
  744gCCA12.38%
  745Brainvox12.36%
  746M312.26%
  747MouseTracker12.05%
  748MEG Tools11.74%
  749INCF11.07%
  750UNC Primate Brain Atlas11.03%
  751Caret11.02%
  752MaCH10.86%
  753CDF-HC PointSetReg10.23%
  754ShapeComplexAtlas10.08%
  755Rodent Brain Extraction Tool9.924%
  756MaCH-Admix9.719%
  757Distributome9.215%