Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
930718
2
Nilearn
717799
3
ITK-SNAP
448995
4
BIDScoin
372484
5
FCP/INDI PRIVATE SITE
355534
6
IIT Human Brain Atlas (v.5.0)
197577
7
fMRI-CPCA
197164
8
MRIcroGL
188109
9
1000 Functional Connectomes Project
179876
10
CONN : functional connectivity toolbox
178518
11
BrainNet Viewer
105059
12
DTI-TK
92867
13
IBSR
78930
14
BioImage Suite
75071
15
Multi-Modal MRI Reproducibility Resource
70190
16
age-ility
66972
17
BXH/XCEDE Tools
65025
18
WFU_PickAtlas
64725
19
NIDB - Neuroinformatics Database
59313
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
55180
21
Solar Eclipse Imaging Genetics tools
51145
22
JIST: Java Image Science Toolkit
50903
23
The Neuro Bureau
47831
24
PANDA: a pipeline tool for diffusion MRI
47620
25
GIFTI
44991
26
BrainFlow
42458
27
Functional Imaging BIRN
40115
28
EEGLAB
39954
29
3T DWI test-retest reliability dataset
39896
30
NITRC Computational Environment (NITRC-CE)
39819
31
TOADS-CRUISE Brain Segmentation Tools
38774
32
fNIRS Data Analysis Environment
38573
33
FreeSurfer
37976
34
Generalized PPI Toolbox
35022
35
BrainMap Database
32239
36
Network-Based Statistic (NBS)
27904
37
QuickNII - Serial section aligner to volumetric atlases
27633
38
Homer2
27070
39
Multimodal Visual Consciousness Study Dataset
26641
40
UNC 0-1-2 Infant Atlases
25274
41
NeuroDebian
25250
42
Anima
25073
43
NYU CSC TestRetest
24962
44
BrainVisa Morphologist extensions
24339
45
Brain Biomechanics Imaging Resources
23800
46
XNAT Extras
21856
47
Neuroimaging Made Easy Blog
19192
48
Melbourne Subcortex Atlas
19071
49
Mango
18797
50
CBS High-Res Brain Processing Tools
18131
51
MIITRA atlas
18102
52
MITK Diffusion
17965
53
Data Format Tools
17686
54
Automatic Registration Toolbox
17652
55
Surf Ice
17548
56
Fast Nonlocal Means for MRI denoising
17122
57
Vaa3D and Vaa3D-Neuron
17016
58
GRETNA
16974
59
4D UNC Neonatal and Infant Cortical Surface Atlases
16765
60
SRI24 Atlas: Normal Adult Brain Anatomy
16607
61
3D Slicer
15791
62
Diffusion Toolkit / TrackVis
15719
63
Talairach Daemon
15695
64
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
15667
65
CANDI Neuroimaging Access Point
15531
66
Group ICA Toolbox (GIFT and EEGIFT)
15527
67
Spatially Constrained Parcellation
15517
68
DCP：Diffusion Connectome Pipeline
15013
69
BrainMask Volume Processing Tool
14941
70
Computational Morphometry Toolkit (CMTK)
14903
71
3DSlicerLupusLesionModule
14570
72
Freesurfer fsaverage
14482
73
BrainSuite
14205
74
DWI/DTI Quality Control Tool: DTIPrep
14116
75
Brainstorm
13825
76
Human Imaging Database (HID)
13657
77
TumorSim
13556
78
MRtrix
13555
79
Awake Rat rsfMRI Database
13545
80
Subject Order-Independent Group ICA
13377
81
FSL
13205
82
dcm2nii
13068
83
Hammer And WML Modules for 3D Slicer
12865
84
NeuroImaging Analysis Kit (NIAK)
12840
85
libminc - Medical Image NetCDF library
12775
86
Artifact Detection Tools (ART)
12486
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12182
88
ENIGMA-DTI pipeline
12088
89
BrainVISA
11580
90
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11272
91
NIfTI
11208
92
Task Independent Fluctuations Discussion
11131
93
2008 MICCAI MS Lesion Segmentation Challenge
11070
94
SVNTest
11045
95
Diffusional Kurtosis Estimator
11034
96
MARS (Multi-Atlas Robust Segmentation)
11028
97
Graph Theory GLM (GTG) MATLAB Toolbox
11012
98
SPHARM-PDM Toolbox
10963
99
SPM for fNIRS toolbox
10945
100
NODDI Matlab Toolbox
10768