Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank
Tool/Resource name
Downloads
1
BIDScoin
1439120
2
Nilearn
1285388
3
MRIcron
1055468
4
ITK-SNAP
492849
5
FCP/INDI PRIVATE SITE
419044
6
IIT Human Brain Atlas (v.5.0)
274419
7
CONN : functional connectivity toolbox
254766
8
MRIcroGL
222125
9
fMRI-CPCA
216907
10
1000 Functional Connectomes Project
187985
11
BrainNet Viewer
148639
12
BXH/XCEDE Tools
142795
13
NIDB - Neuroinformatics Database
131772
14
age-ility
118467
15
BioImage Suite
103304
16
DTI-TK
102398
17
JIST: Java Image Science Toolkit
99889
18
Solar Eclipse Imaging Genetics tools
97099
19
BrainFlow
96941
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
91323
21
IBSR
87652
22
Multi-Modal MRI Reproducibility Resource
84425
23
GIFTI
69907
24
NITRC Computational Environment (NITRC-CE)
69840
25
WFU_PickAtlas
68053
26
PANDA: a pipeline tool for diffusion MRI
60214
27
Multimodal Visual Consciousness Study Dataset
59798
28
3T DWI test-retest reliability dataset
56952
29
The Neuro Bureau
56191
30
Standard Amygdalar fMRI Probe Tasks
55994
31
Functional Imaging BIRN
55410
32
QuickNII - Serial section aligner to volumetric atlases
51964
33
TOADS-CRUISE Brain Segmentation Tools
50793
34
Generalized PPI Toolbox
48656
35
MIITRA atlas
47917
36
BrainMap Database
47668
37
Melbourne Subcortex Atlas
47460
38
fNIRS Data Analysis Environment
45880
39
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
43713
40
NeuroImaging Analysis Kit (NIAK)
42152
41
Network-Based Statistic (NBS)
42111
42
Brain Biomechanics Imaging Resources
41592
43
CBS High-Res Brain Processing Tools
41539
44
DWI/DTI Quality Control Tool: DTIPrep
40890
45
EEGLAB
40140
46
UNC 0-1-2 Infant Atlases
39674
47
Graph Theory GLM (GTG) MATLAB Toolbox
39354
48
FreeSurfer
38011
49
TumorSim
36667
50
Homer2
33517
51
4D UNC Neonatal and Infant Cortical Surface Atlases
33356
52
NYU CSC TestRetest
31645
53
SPHARM-PDM Toolbox
30241
54
BrainVisa Morphologist extensions
30069
55
NeuroDebian
30060
56
Anima
29537
57
XNAT Extras
29084
58
ANDA
28936
59
Multi-site Frequency Drift MR Spectroscopy
27700
60
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
26673
61
SRI24 Atlas: Normal Adult Brain Anatomy
26532
62
BrainMask Volume Processing Tool
26460
63
CANDI Neuroimaging Access Point
26444
64
Neuroimaging Made Easy Blog
26028
65
ShapePopulationViewer
25604
66
3DSlicerLupusLesionModule
24973
67
AutoSeg
24568
68
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
24247
69
MRtrix
23181
70
NeuroDOT
22680
71
Awake Rat rsfMRI Database
22527
72
Data Format Tools
22404
73
Fast Nonlocal Means for MRI denoising
22338
74
Vaa3D and Vaa3D-Neuron
22316
75
Hammer And WML Modules for 3D Slicer
21189
76
Group ICA Toolbox (GIFT and EEGIFT)
21003
77
Surf Ice
20379
78
Mango
20143
79
Automatic Registration Toolbox
19923
80
Talairach Daemon
19692
81
Human Imaging Database (HID)
19606
82
Subject Order-Independent Group ICA
19146
83
ENIGMA-DTI pipeline
19095
84
3D Slicer
19087
85
ReproNim: A Center for Reproducible Neuroimaging Computation
19066
86
3DMeshMetric
19051
87
Freesurfer fsaverage
18838
88
MITK Diffusion
18814
89
Computational Morphometry Toolkit (CMTK)
18594
90
BrainSuite
18393
91
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
18325
92
DCP：Diffusion Connectome Pipeline
18236
93
GRETNA
18219
94
Neurosynth Compose
18128
95
MARS (Multi-Atlas Robust Segmentation)
18076
96
Diffusion Toolkit / TrackVis
17873
97
Spatially Constrained Parcellation
17551
98
Group Sparse Canonical Correlation Analysis
17497
99
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
17333
100
Maps4Mipav (Exploratory JIST)
17036