Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
926702
2
Nilearn
698244
3
ITK-SNAP
446285
4
BIDScoin
351524
5
FCP/INDI PRIVATE SITE
351183
6
fMRI-CPCA
196755
7
IIT Human Brain Atlas (v.5.0)
195168
8
MRIcroGL
185776
9
1000 Functional Connectomes Project
179485
10
CONN : functional connectivity toolbox
176049
11
BrainNet Viewer
103941
12
DTI-TK
92526
13
IBSR
78614
14
BioImage Suite
74528
15
Multi-Modal MRI Reproducibility Resource
69502
16
age-ility
65624
17
WFU_PickAtlas
64460
18
BXH/XCEDE Tools
63227
19
NIDB - Neuroinformatics Database
56694
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
54280
21
Solar Eclipse Imaging Genetics tools
50386
22
JIST: Java Image Science Toolkit
50117
23
The Neuro Bureau
47440
24
PANDA: a pipeline tool for diffusion MRI
47286
25
GIFTI
44260
26
BrainFlow
40518
27
EEGLAB
39939
28
Functional Imaging BIRN
39547
29
3T DWI test-retest reliability dataset
39291
30
NITRC Computational Environment (NITRC-CE)
39159
31
TOADS-CRUISE Brain Segmentation Tools
38510
32
fNIRS Data Analysis Environment
38235
33
FreeSurfer
37975
34
Generalized PPI Toolbox
34657
35
BrainMap Database
31818
36
Network-Based Statistic (NBS)
27174
37
QuickNII - Serial section aligner to volumetric atlases
27103
38
Homer2
26882
39
Multimodal Visual Consciousness Study Dataset
25211
40
NeuroDebian
24997
41
Anima
24917
42
UNC 0-1-2 Infant Atlases
24829
43
NYU CSC TestRetest
24646
44
BrainVisa Morphologist extensions
24135
45
Brain Biomechanics Imaging Resources
23366
46
XNAT Extras
21615
47
Neuroimaging Made Easy Blog
18938
48
Melbourne Subcortex Atlas
18769
49
Mango
18725
50
MITK Diffusion
17944
51
CBS High-Res Brain Processing Tools
17721
52
Automatic Registration Toolbox
17530
53
Data Format Tools
17511
54
Surf Ice
17397
55
MIITRA atlas
17218
56
Fast Nonlocal Means for MRI denoising
17033
57
GRETNA
16916
58
Vaa3D and Vaa3D-Neuron
16797
59
4D UNC Neonatal and Infant Cortical Surface Atlases
16393
60
SRI24 Atlas: Normal Adult Brain Anatomy
16377
61
3D Slicer
15727
62
Talairach Daemon
15617
63
Diffusion Toolkit / TrackVis
15615
64
Spatially Constrained Parcellation
15411
65
Group ICA Toolbox (GIFT and EEGIFT)
15293
66
CANDI Neuroimaging Access Point
15212
67
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
14966
68
DCP：Diffusion Connectome Pipeline
14856
69
Computational Morphometry Toolkit (CMTK)
14773
70
BrainMask Volume Processing Tool
14685
71
3DSlicerLupusLesionModule
14391
72
Freesurfer fsaverage
14361
73
BrainSuite
13982
74
DWI/DTI Quality Control Tool: DTIPrep
13852
75
Brainstorm
13824
76
Human Imaging Database (HID)
13487
77
MRtrix
13393
78
TumorSim
13305
79
Awake Rat rsfMRI Database
13280
80
Subject Order-Independent Group ICA
13171
81
FSL
13087
82
dcm2nii
13042
83
libminc - Medical Image NetCDF library
12771
84
Hammer And WML Modules for 3D Slicer
12642
85
NeuroImaging Analysis Kit (NIAK)
12593
86
Artifact Detection Tools (ART)
12390
87
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12005
88
ENIGMA-DTI pipeline
11835
89
BrainVISA
11540
90
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11210
91
NIfTI
11096
92
2008 MICCAI MS Lesion Segmentation Challenge
11063
93
Task Independent Fluctuations Discussion
11000
94
Diffusional Kurtosis Estimator
10947
95
SPM for fNIRS toolbox
10874
96
MARS (Multi-Atlas Robust Segmentation)
10851
97
Graph Theory GLM (GTG) MATLAB Toolbox
10818
98
NODDI Matlab Toolbox
10724
99
SPHARM-PDM Toolbox
10645
100
SVNTest
10484