Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1049512
2
MRIcron
998821
3
BIDScoin
837974
4
ITK-SNAP
473644
5
FCP/INDI PRIVATE SITE
392099
6
IIT Human Brain Atlas (v.5.0)
233061
7
CONN : functional connectivity toolbox
216195
8
MRIcroGL
209646
9
fMRI-CPCA
208700
10
1000 Functional Connectomes Project
184836
11
BrainNet Viewer
126144
12
BXH/XCEDE Tools
102827
13
DTI-TK
98356
14
NIDB - Neuroinformatics Database
95280
15
age-ility
85716
16
IBSR
83217
17
BioImage Suite
82460
18
Multi-Modal MRI Reproducibility Resource
77765
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
76251
20
Solar Eclipse Imaging Genetics tools
75274
21
JIST: Java Image Science Toolkit
71322
22
BrainFlow
68749
23
WFU_PickAtlas
67026
24
GIFTI
57511
25
NITRC Computational Environment (NITRC-CE)
54709
26
PANDA: a pipeline tool for diffusion MRI
54525
27
The Neuro Bureau
52036
28
3T DWI test-retest reliability dataset
48925
29
Functional Imaging BIRN
48883
30
Multimodal Visual Consciousness Study Dataset
43757
31
TOADS-CRUISE Brain Segmentation Tools
43413
32
fNIRS Data Analysis Environment
42550
33
Generalized PPI Toolbox
41879
34
EEGLAB
40092
35
QuickNII - Serial section aligner to volumetric atlases
39691
36
FreeSurfer
37991
37
BrainMap Database
37728
38
Network-Based Statistic (NBS)
37081
39
MIITRA atlas
35971
40
NeuroImaging Analysis Kit (NIAK)
34176
41
UNC 0-1-2 Infant Atlases
33443
42
Brain Biomechanics Imaging Resources
32318
43
Homer2
30433
44
DWI/DTI Quality Control Tool: DTIPrep
29791
45
Graph Theory GLM (GTG) MATLAB Toolbox
29207
46
TumorSim
28922
47
NeuroDebian
27883
48
NYU CSC TestRetest
27843
49
BrainVisa Morphologist extensions
27291
50
Anima
27256
51
CBS High-Res Brain Processing Tools
26528
52
Melbourne Subcortex Atlas
26368
53
XNAT Extras
25635
54
Standard Amygdalar fMRI Probe Tasks
25345
55
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
25144
56
4D UNC Neonatal and Infant Cortical Surface Atlases
24478
57
SPHARM-PDM Toolbox
23341
58
Neuroimaging Made Easy Blog
23048
59
SRI24 Atlas: Normal Adult Brain Anatomy
21536
60
BrainMask Volume Processing Tool
20685
61
CANDI Neuroimaging Access Point
20337
62
Data Format Tools
19954
63
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
19866
64
Fast Nonlocal Means for MRI denoising
19852
65
Vaa3D and Vaa3D-Neuron
19822
66
Mango
19546
67
Surf Ice
19241
68
Automatic Registration Toolbox
18845
69
Group ICA Toolbox (GIFT and EEGIFT)
18742
70
3DSlicerLupusLesionModule
18590
71
MITK Diffusion
18447
72
ShapePopulationViewer
17880
73
GRETNA
17763
74
Awake Rat rsfMRI Database
17746
75
MRtrix
17557
76
Subject Order-Independent Group ICA
17389
77
Talairach Daemon
17360
78
DCP：Diffusion Connectome Pipeline
16922
79
Hammer And WML Modules for 3D Slicer
16903
80
Diffusion Toolkit / TrackVis
16898
81
Freesurfer fsaverage
16796
82
Human Imaging Database (HID)
16664
83
Spatially Constrained Parcellation
16623
84
Computational Morphometry Toolkit (CMTK)
16506
85
BrainSuite
16423
86
AutoSeg
16362
87
3D Slicer
16307
88
ENIGMA-DTI pipeline
16284
89
ANDA
15981
90
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
14984
91
MARS (Multi-Atlas Robust Segmentation)
14980
92
NeuroDOT
14664
93
FSL
14538
94
Multi-site Frequency Drift MR Spectroscopy
14069
95
Brainstorm
13847
96
Artifact Detection Tools (ART)
13823
97
Maps4Mipav (Exploratory JIST)
13504
98
ReproNim: A Center for Reproducible Neuroimaging Computation
13437
99
dcm2nii
13279
100
Nighres
13267