Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.72%
  21000 Functional Connectomes Project97.07%
  3ITK-SNAP95.86%
  4BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6MRIcroGL92.78%
  7rapidtide92.34%
  8Rosetta Bit90.88%
  9DTI-TK90.43%
  10Functional Mixed Processes Models89.05%
  11PANDA: a pipeline tool for diffusion MRI88.46%
  12Multi-Modal MRI Reproducibility Resource88.29%
  13MPScope88.22%
  14HippocampalUnfolding_ManualInitialization87.71%
  15BrainNet Viewer87.13%
  16CONN : functional connectivity toolbox85.97%
  17TOADS-CRUISE Brain Segmentation Tools85.84%
  18Cavernous Hemangioma: Epilepsy & ADD84.87%
  19ENIGMA resting state fMRI processing pipeline84.77%
  20CBICA: PREDICT84.68%
  21JIST: Java Image Science Toolkit84.55%
  22Kurtosis Imaging Network - KIN84.52%
  23CBICA: Brain Tumor Modeling - Coupled Solver84.40%
  24ITools Resourceome84.16%
  25Fast Lesion Extraction using Convolutional Neural Networks84.04%
  26Hadoop for data colocation84.04%
  27CBICA: Brain Anatomy Simulator83.98%
  28Functional Imaging BIRN83.90%
  29Local Label Learning (LLL) Segmentation83.13%
  30HD Neuro-Informatics83.02%
  31Infant Macaque MRI And DTI Templates82.26%
  32Lumina LP- 400 Response System82.21%
  33Philips Users Community82.17%
  34Brainstem Connectome Atlas82.03%
  35HERMES81.06%
  36NUTMEG80.78%
  37Vaa3D and Vaa3D-Neuron80.71%
  38ODIN80.52%
  39Stochastic Tractography System80.43%
  40NeuroDebian80.30%
  41Solar Eclipse Imaging Genetics tools80.14%
  42Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  43fMRIstat79.79%
  44Bayesian longitudinal low-rank regression79.68%
  45map3d79.67%
  46Turbo-BrainVoyager79.64%
  47MITK Diffusion79.12%
  48DSI Studio79.11%
  49WFU_PickAtlas79.02%
  50Seg3D78.68%
  51Ogles - OpenGL/OIV Stereotactic Tool78.64%
  52Umeå Brain Arteries78.64%
  53iView X MRI-LR - Eye Tracking for fMRI78.64%
  54MASIMatlab78.55%
  55L-Neuron78.49%
  56XCEDE Schema78.35%
  573T DWI test-retest reliability dataset78.11%
  58BioSig78.08%
  59NITRC Image Repository (NITRC-IR)78.00%
  60Curry 777.81%
  61GazeReader77.81%
  62Functional ROI Atlas77.78%
  63BluePyOpt77.70%
  64SurfStat77.60%
  65CBRAIN77.49%
  66GPU based affine registration77.46%
  67ConWhAt - A library for Connectome-Based White Matter Atlas analysis77.34%
  68FieldTrip77.34%
  69Biomag Discussion Group on Yahoo77.32%
  70GIFTI77.30%
  71VALiDATe29 squirrel monkey brain atlas77.21%
  72XNBC77.14%
  73CBICA: Chimera77.05%
  74Visually Evoked Potential EEG (raw)77.01%
  75Brede Toolbox77.01%
  76EEG Toolbox76.93%
  77HCP Harvard/MGH-UCLA76.85%
  78EEProbe76.84%
  79epi-example-dicom76.63%
  80E-Prime Extensions for fMRI76.62%
  81NIMH Data Archive / National Database for Autism Research76.52%
  82TurtleSeg76.48%
  83MindSeer76.42%
  84COINS76.26%
  85EONS76.25%
  86Insight Toolkit76.17%
  87Spatial Analysis 3D76.15%
  88ASA - Advanced Source Analysis76.11%
  89NIPY Diffusion Imaging Analysis76.10%
  90Brain Products' EEG/fMRI Hardware76.05%
  91dcm2nii76.04%
  92Cytoseg75.83%
  93HCP WU-Minn Consortium75.77%
  94In vivo MEMRI-based Rat Brain Atlas75.71%
  95NICE-SIGN75.68%
  96MNI Macaque Atlases75.65%
  97GesTr75.60%
  98cmrep75.59%
  99ParaView75.52%
  100PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  101Framework for Open Programmatic Access75.38%
  102LIBEEP75.38%
  103NIPY File IO75.18%
  104Micro-Manager75.17%
  105CBICA: PORTR75.13%
  106A robust method for correcting partial volume effect in ASL data75.12%
  107NFT: Neuroelectromag Forward Modeling75.04%
  108CBICA: ODVBA74.97%
  109Brainsight74.90%
  110Faceted Search Based Ontology Visualizer74.89%
  111INCF Neuroimaging Data Sharing74.89%
  112Net Station74.81%
  113UCLA Multimodal Connectivity Database74.77%
  114FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  115brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  116Generalized PPI Toolbox74.70%
  117EEGVIS74.66%
  118ProbabilisticBiasCorrection74.60%
  119I/OWA 374.57%
  120dtiBrainScope74.54%
  121DICOM_UploadGUI74.52%
  122Connectome File Format (CFF)74.48%
  123APERTURE74.44%
  124mask_explorer74.44%
  125Bisque74.41%
  126BrainLiner.jp74.34%
  127Advanced Normalization Tools74.32%
  128SpiCoDyn74.31%
  129Nilearn74.29%
  130nitime74.27%
  131INVIZIAN74.26%
  132Anatomist74.21%
  133NordicNeuroLab74.14%
  134XCEDE Schema74.09%
  135Presentation74.05%
  136connectir74.03%
  137NC-IGT Fast Imaging Library74.00%
  138Age Related Atrophy Dataset74.00%
  139ERPLAB73.92%
  140VIEWPixx73.91%
  141CANDI Share: Schizophrenia Bulletin 200873.91%
  142Triangle BioSystems73.89%
  143BrainMaps.org73.86%
  144Pydicom73.82%
  145The fMRI Data Center73.82%
  146PySurfer73.76%
  147Surf Ice73.68%
  148fMRI-CPCA73.67%
  149NITRC Community73.65%
  150Statistics Online Computational Resource73.45%
  151TARQUIN MRS analysis package73.40%
  152NIRx NIRS Neuroimaging73.39%
  153CBICA: Datasets73.38%
  154PyNIfTI73.36%
  155MINC - Medical Image NetCDF73.35%
  156XNAT Extras73.31%
  157Neuroimaging Made Easy Blog73.28%
  158COGNISION (TM) System73.25%
  159OpenElectrophy73.22%
  160NIPY Community73.20%
  161Network-Based Statistic (NBS)73.15%
  162PVS_Enhance72.99%
  163NeuroScope72.95%
  164ASL data processing tool box72.94%
  165MagPro Magnetic Stimulator (TMS)72.94%
  166Lipsia72.87%
  167MedINRIA72.87%
  168Mouse Connectome Project (MCP)72.79%
  169Fiber Tracking Tool72.78%
  170Fiber-tracking based on Finsler distance72.78%
  171SumsDB Database72.73%
  172Celeritas: Fiber Optic Response System72.72%
  173CUDA accelerated spherical model M/EEG72.66%
  174False Discovery Rate Weighted72.64%
  175DATAPixx72.63%
  176OpenFMRI72.62%
  177DONE: Detection of Outlier NEurons72.55%
  178ArtRepair for robust fMRI72.45%
  179WhiteText - annotated neuroscience text72.44%
  180NIPY Structural and Functional Analysis72.36%
  181CLEAVE: Large Data Set ANOVA72.21%
  182scikit-learn72.17%
  183Mag Design and Engineering72.10%
  184Working Memory Trainer72.06%
  185PPMI72.00%
  186SFMProject71.92%
  187vuTools71.88%
  188Hitachi Optical Topography System71.88%
  189Waxholm Space Atlas of the Sprague Dawley Rat Brain71.88%
  190BRAINSConstellationDetector71.85%
  191Computational Morphometry Toolkit (CMTK)71.83%
  192BioImage Suite71.67%
  193Hyperion: MRI Digital Projection System71.59%
  194ShapeViewer71.52%
  195Normative Independent Component Analysis71.48%
  196LDDMM71.43%
  197fNIR Devices71.38%
  198OpenMEEG71.38%
  199TORTOISE71.25%
  200NeuroElf71.23%
  201ADNI71.16%
  2024D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  203COST71.02%
  204EEGLAB71.02%
  205NeuroSynth70.83%
  206GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity70.75%
  207Viking Viewer for Connectomics70.74%
  208SR Research EyeLink Eye Trackers70.67%
  209Data Format Tools70.64%
  210LONI Provenance Editor70.63%
  211CoCoMac Brain Connectivity Database70.62%
  212MazeSuite70.54%
  213BrainBrowser70.49%
  214Pipeline Neuroimaging VirtualEnvironment70.41%
  215Biomedical Informatics Research Network70.34%
  216ENIGMA-DTI pipeline70.30%
  217BrainVisa Morphologist extensions70.16%
  218ReproNim: A Center for Reproducible Neuroimaging Computation70.15%
  219Open Connectome Project70.04%
  220REST: a toolkit for resting-state fMRI69.97%
  221OEI fMRI compatible olfactometer69.96%
  222Journals69.76%
  223Fast Fourier Transform (FFT) JavaLibrary69.75%
  224Laboratory of Neuro Imaging (LONI)69.74%
  225IMOD - 3D Reconstruction and Analysis69.72%
  226Primatologist69.64%
  227CBICA: Confetti69.57%
  228CBICA: WhiteStripe69.48%
  229Mouse BIRN69.44%
  230BrainGraph Editor 1.0 Beta69.44%
  231Source Information Flow Toolbox69.36%
  232UNC 0-1-2 Infant Atlases69.32%
  233LIMO EEG69.17%
  234Center for Computational Biology (CCB)69.15%
  235Homer269.12%
  236PICASSO skull stripping tool69.01%
  237FADTTSter68.99%
  238Synchronized Histological Image View Arc68.86%
  239cbiNifti: Matlab/Octave Nifti library68.82%
  240Analyze68.78%
  241DPARSF68.68%
  242Textpresso - literature search engine68.67%
  243The Neuro Bureau68.62%
  244SMAC: Spatial Multi-category Angle-based Classifier68.62%
  245E-Prime68.58%
  246MRI Simulator68.50%
  247BrainMap Database68.33%
  248Arterial Territories of the Neonatal Brain: automated classification68.32%
  249PsychoPy68.14%
  250CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  251Grantees Meeting for NITRC68.08%
  252Create DWI Atlas67.98%
  253UNC/Utah NAMIC DTI Fiber Analysis Framework67.77%
  254BrainVISA67.75%
  255BrainMagix SPM Viewer67.70%
  256BioMesh3D67.70%
  257Multiscale Weighted Principal Component Regression67.66%
  258NeuroWeb - NeuroImaging Database67.63%
  259NeuriteTracer67.45%
  260MultiTracer version 267.40%
  261dinifti67.32%
  262Challenge Competitions Collection67.26%
  263Low Resolution Brain Electromagnetic Tomography67.25%
  264IIT Human Brain Atlas (v.4.1)67.20%
  265N2A67.19%
  266Brede Wiki67.00%
  267SCIRun66.94%
  268HFH_DTI_DATA66.87%
  269Signed Differential Mapping66.86%
  270Spatially Constrained Parcellation66.80%
  271Rockland Download Link Script66.78%
  272Mango66.78%
  273MEGSIM66.69%
  274UNC-Wisconsin Neurodevelopment Rhesus MRI Database66.64%
  275NIPY Pipeline and Interfaces66.47%
  276CAMINO-TRACKVIS66.47%
  277NIH Marmoset Brain Atlas66.45%
  278HDBIG66.40%
  2793D Slicer66.30%
  280ImageVis3D66.18%
  281Books65.58%
  282BrainMask Volume Processing Tool65.54%
  283Group Level Imputation of Statistic Maps65.49%
  284Prospective Acquisition CorrEction (PACE) Resting State EPI data65.38%
  285Connectome Viewer65.38%
  286SCRalyze65.38%
  287fNIRS Data Analysis Environment65.37%
  288SPM for fNIRS toolbox65.35%
  289ShapeTools65.31%
  290MRBrainS Evaluation Framework / Challenge65.15%
  291ExPosition Packages65.09%
  292MRI_CVPR65.08%
  293NIREP64.96%
  294Parkinson's Disease Discovery Database64.60%
  295Longitudinal neuroimaging hippocampal markers for diagnosing Alzheimer's disease64.48%
  296NCANDA: Data Integration Component64.37%
  297Anima64.29%
  298Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  299Diffusion Warp64.08%
  300MARS (Multi-Atlas Robust Segmentation)63.80%
  301Non-rigid groupwise registration method63.75%
  302Diffusion Toolkit / TrackVis63.70%
  303Web Interfaces for Multiscale Images63.57%
  304Augmented Reality Mirror63.55%
  305MarsBaR region of interest toolbox63.54%
  306Temporal-lobe.com63.32%
  307NeoSegPipeline63.20%
  308Brain Entropy in space and time (BEst)63.14%
  309FSL extensions63.14%
  310fNIRS Research Database63.14%
  311Hammer And WML Modules for 3D Slicer63.11%
  312Medical Image Visualization and Analysis63.06%
  313AFNI63.05%
  314Neuroimaging Data Access Group62.68%
  315The Cognitive Atlas62.43%
  316CBICA: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters (MUSE)62.31%
  317Tractography based on Riemannian geodesics and tensor adjugates62.21%
  318DT_BOLD_calc61.89%
  319The UNC EBDS neonatal DTI fiber atlas61.82%
  320Mindboggle-101 manually labeled brains61.81%
  321GRETNA61.76%
  322UNC 4D Infant Cortical Surface Atlas61.72%
  323Monte Carlo Simulation Software: tMCimg61.67%
  324Neural ElectroMagnetic Ontologies61.65%
  325PubBrain Database61.64%
  326MoTrak: Head Motion Tracking System61.63%
  327IBSR61.62%
  328Talairach Daemon61.47%
  329Rodent Cortical Thickness Analysis61.39%
  330CBICA: PHI Estimator61.34%
  331CIGAL61.11%
  332NeuroImaging Analysis Kit (NIAK)60.94%
  333Mesh-based Monte Carlo (MMC)60.92%
  334MRtrix60.92%
  335MRI denoising60.63%
  336CBICA: MOE60.58%
  337Neuroinformatics - The Journal60.36%
  338CBICA: DTIDROID60.27%
  339CBICA: GONDOLA60.17%
  340Monte Carlo eXtreme (MCX)60.16%
  341IATR60.11%
  342Automatic Registration Toolbox59.86%
  343Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  344Neoseg59.61%
  345SPHARM-PDM Toolbox59.43%
  346iso2mesh59.41%
  347Human Imaging Database (HID)59.27%
  348Functional Connectivity Community59.20%
  349BRAINSSurfaceStats59.18%
  350Progression Score Model Toolkit59.14%
  351Nighres59.13%
  352TAPIR58.98%
  353Statistical Methods for Manifold-valued Data58.97%
  354University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software58.93%
  355NIRAL Utilities58.71%
  356QModeling58.20%
  357Scalable Brain Atlas58.15%
  358Disease State Prediction58.15%
  3592008 MICCAI MS Lesion Segmentation Challenge58.06%
  360Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  361pyxnat57.94%
  362Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  363BraTumIA (Brain Tumor Image Analysis)57.66%
  364FSL57.52%
  365BrainVoyager57.39%
  366Denoising of redundant MR series57.35%
  367BiofilmQuant57.09%
  368NITRC Computational Environment (NITRC-CE)57.06%
  369BRAINSTools57.00%
  3703DSlicerLupusLesionModule56.60%
  371Mayo Clinic Adult Lifespan Template and Atlases55.73%
  372VectorValuedHistogramNormalizer55.65%
  373AutoTract55.51%
  374Center for Functional Neuroimaging Tech55.48%
  375Spinal Cord Toolbox55.13%
  376International Imaging Genetics Conference54.88%
  377Draw3D and Meshinator54.46%
  378TumorSim54.37%
  379DTIProcess ToolKit54.23%
  380Group ICA Toolbox (GIFT and EEGIFT)54.14%
  381TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA54.00%
  382DTI Connectome Pipeline53.76%
  383VMTK in 3D Slicer53.66%
  384Diffusional Kurtosis Estimator53.62%
  385Group Sparse Canonical Correlation Analysis53.36%
  386NIfTI53.19%
  387Subject Order-Independent Group ICA53.18%
  388NeuroshareLibrary53.07%
  389Artifact Detection Tools (ART)53.04%
  390MCIC- schizophrenic and matched control data53.00%
  391CBS High-Res Brain Processing Tools52.90%
  3923d Brain Atlas Reconstructor52.90%
  393C-PAC52.38%
  394ANTsR52.31%
  395STAMP Atlases for Brain Abnormality Detection52.19%
  396BrainVoyager Brain Tutor52.15%
  397Framewise Integrated Real-time MRI Monitoring52.09%
  398SpineSegmentation module for 3DSlicer51.99%
  399EEG human categorization data51.96%
  400PhysIO Toolbox51.67%
  401fMRI Results Comparison Library51.64%
  402Licensing51.63%
  403Parallel Stochastic Ion Channel Simulator51.43%
  404MRI Defacer51.24%
  405NYU CSC TestRetest51.10%
  406VANDPIRE50.79%
  407LONI Pipeline Environment50.67%
  408BRAINSMush50.66%
  409A probabilistic subcortical atlas for PD50.62%
  410factory_t1_dti50.47%
  411Lightweight Data Pipeline50.41%
  412Segmentation-based Multimodal Rigid Image Registration50.28%
  413ABSORB for groupwise registration50.22%
  414shapeAnalysisMANCOVA - SPHARM tools49.87%
  415nonfractal49.78%
  416CANDI Neuroimaging Access Point49.77%
  417ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  418Waxholm Space Atlas of the C57BL/6J Mouse Brain49.45%
  419Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations49.20%
  420MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  421Multiple Correlation Function Tool48.96%
  422Simple Medical Imaging Library Interface (SMILI)48.92%
  423Pipeline system for Octave and Matlab48.89%
  424Epsilon Radial Networks48.81%
  425Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  426Single-subject Resting state fMRI Reproducibility Resource48.70%
  427Gibbsconnectome48.68%
  428Maps4Mipav (Exploratory JIST) 48.66%
  429GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  430NODDI Matlab Toolbox48.54%
  431SIVIC48.42%
  432A 3T probabilistic Locus Coeruleus atlas48.28%
  433CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)48.27%
  434Conferences, Workshops and Meetings48.24%
  435PREDiCT48.15%
  436BXH/XCEDE Tools47.89%
  437ANIMA47.79%
  438PD RS-fMRI meta and validation47.72%
  439UNC CEDARS INFANT ATLAS47.68%
  440DWI/DTI Quality Control Tool: DTIPrep47.62%
  441GenGen47.52%
  442ATPP: Automatic Tractography-based Parcellation Pipeline47.45%
  443BRAINSFit47.32%
  444BrainSuite47.31%
  445ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis47.25%
  446The Grid Code Analysis Toolbox (GridCAT)47.19%
  447The Cancer Imaging Archive (TCIA)47.14%
  448Graph Theory GLM (GTG) MATLAB Toolbox46.99%
  449Mixed Effect Model of Genetic-Set and Environment Interaction46.67%
  450MRI Dataset for Hippocampus Segmentation46.59%
  451Local Manifold Learning for Multi-atlas segmentation46.38%
  452Task Independent Fluctuations Discussion46.34%
  453SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation46.26%
  454FBIRN Image Processing Scripts (FIPS)45.96%
  455GIMME (Group Iterative Multiple Model Estimation)45.91%
  456Robust Brain Extraction (ROBEX)45.75%
  457Diffusion MRI @ DKFZ Heidelberg45.52%
  458FreeSurfer45.31%
  459BetA-Series COrrelation45.14%
  460MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data45.11%
  461Statistical Methods for Heterogeneous Neuroimaging Data45.03%
  462Generation R Pediatric MRI Resources44.99%
  463PESTICA & SLOMOCO: physio and motion correction tools44.96%
  464Vervet Probabilistic Atlas44.95%
  465isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab44.94%
  466Best Practices for Software Development44.91%
  467Spanish Resting State Network44.84%
  468NeuroImage Field-of-View Normalization Tool44.45%
  469Bayesian Connectivity Analysis software (BCA)44.44%
  470Imeka Tractography Service44.35%
  471Optseq - fMRI Event Scheduler44.02%
  472EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  473In vivo MEMRI-based Mouse Brain Atlas43.68%
  474Magnetic Resonance Angiography Atlas Dataset43.49%
  475FMRIpower43.49%
  476Preprocessed Connectomes Project43.46%
  477QCQP43.44%
  478Human Connectome Project (HCP)43.41%
  479Brain Connectivity Toolbox43.39%
  480Multicomponent T2 estimation with stimulated echo correction43.38%
  481SRI24 Atlas: Normal Adult Brain Anatomy43.25%
  482Wisconsin White Matter Hyperintensities Segmentation Toolbox43.23%
  483MATLAB Tutorial on Diffusion Tensor MRI43.16%
  484Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  485age-ility42.87%
  486Atlasing of the basal ganglia42.70%
  487BRAINSROIAuto42.50%
  488Graphtools42.47%
  489iBEAT42.38%
  490NIDB - Neuroinformatics Database42.27%
  491Phoneme-Syllable Tsinghua University CS&T 201142.19%
  492MONSTR Multi Contrast Brain Stripping42.13%
  493SPM42.01%
  494ShapeComplexityIndex41.87%
  495SLIC: a whole brain parcellation toolbox41.86%
  496NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space41.82%
  497Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function41.69%
  498ABC (Atlas Based Classification)41.47%
  499YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  500Brainance DTI Module41.33%
  501REX41.08%
  502Cluster reporter41.03%
  503S-rep Fitting, Statistics, and Segmentation41.01%
  504AHEAD40.97%
  505Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  506MRI Brain Template and Atlas of the Mouse Lemur Primate Microcebus murinus40.90%
  507Neurolucida40.86%
  508HAMMER: Deformable Registration40.75%
  509Brainnetome fMRI toolkit40.60%
  510CBFBIRN40.45%
  511Stereo Investigator40.09%
  512Tissue Thickness Estimation via Minimum Line Integrals40.03%
  5137T Structural MRI scans ATAG39.69%
  514POS2SPM39.14%
  515DTI-TEMPLATE-RHESUS-MACAQUES38.76%
  516SegEditing38.76%
  517Quantitative Diffusion Tools38.58%
  518FiberViewerLight38.56%
  519Brainnetome DiffusionKit38.32%
  520S3DL Sparse Dictionary Learning based MR Image and Lesion Segmentation38.29%
  521Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)38.24%
  522XNAT38.20%
  523masked ICA (mICA) Toolbox38.16%
  524Functional Analysis of Diffusion Tensor38.06%
  525A Shimadzu to .nirs data converter37.63%
  526Fast Nonlocal Means for MRI denoising37.61%
  527VAMCA Cortical Meta-analysis Toolbox37.53%
  528LONI Debabeler37.42%
  529MIRCen Macaca fascicularis brain MRI segmentation dataset37.00%
  530CBICA: Multi Atlas Skull Stripping (MASS)36.74%
  531CutNII - Custom-angle slicer for brain atlas volumes36.41%
  532BrainCSI36.36%
  533GLIRT36.12%
  534DTI Atlas Builder35.73%
  535Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration35.09%
  536AutoSeg34.97%
  537RapidArt34.88%
  538JIP fMRI Analysis Toolkit34.75%
  539JIST Resources for Algorithm Development34.74%
  540Task-based fMRI atlases34.69%
  541DTI-Reg34.50%
  542CIFTI Connectivity File Format34.43%
  543GTRACT34.29%
  544Emory-UNC Developmental Macaque Structural and DTI Atlases34.06%
  545cPPI Toolbox for fMRI33.81%
  546AMILab33.61%
  547MABMIS: Multi-Atlas Based Segmentation33.60%
  548BrainSolution33.59%
  549Stark Cross-Sectional Aging33.41%
  550DicomBrowser33.36%
  551DRAMMS Deformable Image Registration Toolbox33.21%
  552Clinical Toolbox for SPM33.18%
  553PyMVPA33.13%
  554MRIcroS32.76%
  555MriWatcher32.69%
  556ICA Components from Kessler, et al, JAMA Psychiatry 201632.68%
  557Brainscape32.67%
  558CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.32.45%
  559The De-identification Toolbox - A data sharing tool for neuroimaging studies32.44%
  560UNC detail-preserved longitudinal 0-3-6-9-12 months-old atlas32.38%
  561DTI denoising32.30%
  5623-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood31.94%
  563ADJUST - EEG Automatic Artifact Removal31.76%
  564Computational Anatomy Toolbox - CAT31.70%
  565High-quality diffusion-weighted imaging of Parkinson's disease31.53%
  566Diffusion Tractography with Kalman Filter31.38%
  567Cerebellar White Matter Atlas31.05%
  568ShapeWorks31.01%
  569Slicer3 Example Modules30.94%
  570ASHS: Automatic Segmentation of Hippocampal Subfields30.92%
  571Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)30.62%
  572GIMIAS30.39%
  573Image Synthesis30.34%
  574Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  575NITRC GForge Extensions29.93%
  576BASH4RfMRI29.93%
  577Templates for In vivo Mouse Brain29.86%
  578Program for optimal design of blocked fMRI experiments29.83%
  579MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis29.75%
  580Manually Labeled MRI Brain Scan Database29.75%
  581HAMMER Suite29.71%
  582MRI Studio29.45%
  583Paradigm29.39%
  584peak_nii29.39%
  585Functional Connectivity Analysis Tool for near-infrared spectroscopy data29.38%
  586DFBIdb29.33%
  587SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  588GAMBIT29.22%
  589NPTK29.09%
  590MIPAV28.89%
  591Corpus Callosum Thickness Profile Analysis Pipeline28.86%
  592SkullStrippingToolkit28.75%
  593NIH Pediatric MRI Data Repository28.69%
  594Group Information Guided ICA28.46%
  595UNC Human Brain Atlas28.44%
  596MPI-Leipzig Mind-Brain-Body Dataset28.27%
  597NIH-CIDI Lung Segmentation Tool28.19%
  598Mid-Space-Independent Deformable Image Registration28.19%
  599Numerical Fibre Generator (NFG)27.95%
  600Hierarchical Functional Networks in Resting State fMRI27.73%
  601DICOMConvert27.64%
  602PHYCAA+: adaptive physiological noise correction for BOLD fMRI27.46%
  603A label fusion using CRF27.43%
  604SPHARM-MAT27.24%
  605R-package for adaptive DWI analysis27.16%
  606MRTool27.14%
  607HI-SPEED Software Packets27.05%
  608fMRI Grocer26.96%
  609CleanLine26.87%
  610MisterI26.85%
  611INSTAR (Infant Joint Segmentation and Registration)26.69%
  612Template Image Processing Library26.66%
  613eConnectome26.33%
  614CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)26.30%
  615DW-MRI registration in FSL26.22%
  616Deformable Template Model for Brain Analysis26.20%
  617DTI Fiber Tract Statistics26.18%
  618Robust Biological Parametric Mapping26.00%
  619HFH_DTI_TLE_TOOLS25.97%
  620Brainstorm25.88%
  621Brainnetome Atlas Viewer25.84%
  622ARCTIC25.81%
  623BrainVoyager Viewer25.63%
  624BrainParser25.56%
  625C8: Corpus Callosum Computations25.54%
  626Convert MNI coordinates to or from XYZ25.50%
  627ShapePopulationViewer25.28%
  628MeshValmet: Validation Metric for Meshes25.21%
  629Simulated Diffusion-Weighted Datasets24.91%
  630Zebrafish heart segmentation24.86%
  631Gradient Non-linearity Unwarping Tool24.86%
  632FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.80%
  6333DMeshMetric24.69%
  634LORIS24.52%
  6353T MRI data set on structural brain-behavior correlations24.51%
  636WFU_Pipeline24.51%
  637Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)24.39%
  638MR Connectome Automated Pipeline (MRCAP)24.31%
  639Automatic Segmentation Tool Adapter24.22%
  640Multi-fiber Reconstruction from DW-MRI24.16%
  641MIView24.15%
  642Finsler tractography module for Slicer24.11%
  643Standard Amygdalar fMRI Probe Tasks24.10%
  644MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation24.08%
  645GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data23.80%
  646WFU_BPM23.64%
  647R-package for adaptive fMRI analysis23.63%
  648TetraMetrix23.52%
  649CCSeg - Corpus Callosum Segmentation23.50%
  650MNE - Minimum Norm Current Estimates23.49%
  651Diffusion MRI - In-vivo and Phantom Data23.39%
  652Functional Regression Analysis of DTI23.20%
  653Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising23.19%
  654Morphometry BIRN23.14%
  655B0 and eddy current correction for DTI23.07%
  656ProCTSeg23.03%
  657ToolConnect22.99%
  658Colin 3T/7T High-resolution Atlas22.99%
  659RFT_FDR22.92%
  660MASI Label Fusion22.90%
  661SnPM22.86%
  662aBEAT22.72%
  663OASIS22.68%
  664NiiStat22.68%
  665Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography22.21%
  666JHU Proj. in Applied Medical Imaging22.20%
  667Notion ResearchPACS22.08%
  668HistoloZee - 3D histology reconstruction and co-registration with MRI22.07%
  669Inter-Group Registration Toolbox22.02%
  670POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  671Web Game for Collaborative Labeling21.93%
  672Corpus callosum and brain segmentations from ABIDE database21.90%
  673Iterative dual-regression with sparse prior21.85%
  674Estimating Functional Brain Network based on Modularity Prior21.77%
  675LONI Inspector21.50%
  676Spatial Statistical Parametric Mapping21.50%
  6774D Atlas Construction21.37%
  678PICSL Multi-Atlas Segmentation Tool21.29%
  679Slicer3 Module Rician noise filter21.29%
  680minc-toolkit21.21%
  681Camino21.13%
  682xjView, a viewing tool for SPM21.11%
  683Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data21.10%
  684UManitoba-JHU Functionally-Defined Human White Matter Atlas21.10%
  685MGH Neonatal/Pediatric ADC atlases21.08%
  686volBrain: online MRI segmentation21.02%
  687DOTS WM tract segmentation20.90%
  688SOCK20.83%
  689VoxBo20.82%
  690BTK : Baby Brain Toolkit20.67%
  691freesurfR20.36%
  692cortex20.36%
  693Efficient Permutation Testing20.30%
  694Elastic Net-based Parcellation (ENPA)20.25%
  695DentalTools20.18%
  696NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.84%
  697GAMMA19.81%
  698STAPLE19.69%
  699Generalized Covariance Analysis (gCVA)19.37%
  700Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation19.31%
  701imcalc: SPM batch image calulator19.29%
  702Fusion ICA Toolbox (FIT)19.13%
  703A joint sparse partial correlation method for estimating group functional networks19.07%
  704Parallel Graph-theoretical Analysis Toolkit19.03%
  705NIRx2nirs: A NIRx to .nirs data converter18.96%
  706ALVIN - Lateral Ventricle Segmentation18.88%
  707Randomized Denoising Autoencoders for Neuroimaging18.87%
  708Ultra-high field atlas for DBS planning18.80%
  709Hitachi2nirs18.78%
  710Displacement Field Viewer18.67%
  711Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.67%
  712INIA19 Primate Brain Atlas18.66%
  713FIV18.55%
  714AURA tools : AUtomated Retinal Analysis tools18.43%
  715MOCA18.37%
  716Connectome Workbench18.32%
  717SINOMO (SIngular NOde MOtifs)18.07%
  718BrainNetworkConstructionAnalysisPlatform17.99%
  719Resource Ontology Discussion Group17.92%
  720DW-MRI Random Walk Simulator17.91%
  721Landman NeuroImaging Tools17.76%
  722NVM17.71%
  723Penn Hippocampus Atlas17.69%
  724MouseBIRN Atlasing Toolkit (MBAT)17.55%
  725fMRI Classification in R17.15%
  726AtlasConstructionToolkit17.11%
  727CMFreg17.07%
  728SPM_SS - fMRI functional localizers17.02%
  729CBICA: WMLS (White Matter Lesion Segmentation)16.88%
  730Brain Segmentation Testing Protocol16.77%
  731Longitudinal Multiple Sclerosis Lesion Imaging Archive16.72%
  732Diffusion MRI Tool16.67%
  733Automated Image Registration (AIR)16.54%
  734resting-state pediatric imaging template16.48%
  735BCILAB16.46%
  736MIAS Registration Toolkit16.33%
  737XFSL: An FSL toolbox16.06%
  738Jim16.04%
  739NIRS-SPM16.03%
  740ValMap: simple statistical mapping tool15.79%
  741CoCoMac-Paxinos3D viewer15.74%
  742NeuroLens15.64%
  743Wavelet-based Image Fusion15.54%
  744Segmentation Validation Engine15.51%
  745MGDM: Multi Geometric Deformable Model15.32%
  746IDeA Lab brain image processing suite15.26%
  747DIAMOND15.23%
  748TractoR: Tractography with R15.18%
  749Internet Brain Volume Database (IBVD)15.17%
  750CBICA: COMPARE15.07%
  751vis: SPM Visualized Statistics toolbox14.97%
  752CamBA14.69%
  753DICCCOL predictor (v0.1)14.65%
  754Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI14.42%
  755Brainwaver14.32%
  756Single-index Varying Coefficient Model for Functional Responses14.31%
  757MeshGen - Surface meshes from volumetric segmentation data14.20%
  758Cluster Extent Correction14.17%
  759Measure Projection Toolbox (MPT)14.10%
  760Level-set Segmentation for Slicer314.10%
  761MRI Neuroanatomy Labeling Services14.05%
  762Subject Library14.04%
  763LONI De-identification Debablet13.79%
  764The Brain Coactivation Map13.70%
  765Serotonin Transporter HighResolution PET Template13.35%
  766NeuroPub Visualizer13.32%
  767BrainFX13.22%
  768Microstructural correlation toolbox13.21%
  769mach2dat13.08%
  770gCCA13.02%
  771Kymata Atlas12.95%
  772Using Make for Neuroimaging Workflow: Manual and Examples12.88%
  773N3 - MINC B0 nonuniformity correction12.85%
  774Pythagorean Displacement and Motion Regressors12.78%
  775BrainDecoderToolbox12.76%
  776BrainVision Analyzer12.63%
  777Wisconsin Cortical Thickness Analysis (CTA) Toolbox12.62%
  778VarTbx – Variability Toolbox12.55%
  779SVV12.37%
  780Brainvox12.36%
  781mach2qtl12.27%
  782fanDTasia Java Applet: DT-MRI Processing12.25%
  783M311.92%
  784MouseTracker11.91%
  785MEG Tools11.48%
  786Rodent Brain Extraction Tool11.23%
  787Caret11.02%
  788UNC Primate Brain Atlas10.91%
  789INCF10.90%
  790CDF-HC PointSetReg10.86%
  791MaCH10.11%
  792MaCH-Admix9.989%
  793ShapeComplexAtlas9.742%
  794Distributome9.235%