Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
BIDScoin
1359600
2
Nilearn
1256599
3
MRIcron
1050445
4
ITK-SNAP
489797
5
FCP/INDI PRIVATE SITE
415702
6
IIT Human Brain Atlas (v.5.0)
269517
7
CONN : functional connectivity toolbox
251798
8
MRIcroGL
220753
9
fMRI-CPCA
215852
10
1000 Functional Connectomes Project
187575
11
BrainNet Viewer
145934
12
BXH/XCEDE Tools
138787
13
NIDB - Neuroinformatics Database
125693
14
age-ility
115968
15
DTI-TK
101949
16
BioImage Suite
100108
17
Solar Eclipse Imaging Genetics tools
95052
18
BrainFlow
92862
19
JIST: Java Image Science Toolkit
92711
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
89022
21
IBSR
86980
22
Multi-Modal MRI Reproducibility Resource
83361
23
GIFTI
68542
24
NITRC Computational Environment (NITRC-CE)
67947
25
WFU_PickAtlas
67898
26
PANDA: a pipeline tool for diffusion MRI
59644
27
Multimodal Visual Consciousness Study Dataset
57377
28
The Neuro Bureau
55589
29
3T DWI test-retest reliability dataset
55584
30
Standard Amygdalar fMRI Probe Tasks
55267
31
Functional Imaging BIRN
54494
32
QuickNII - Serial section aligner to volumetric atlases
50484
33
TOADS-CRUISE Brain Segmentation Tools
49212
34
Generalized PPI Toolbox
48178
35
MIITRA atlas
46183
36
fNIRS Data Analysis Environment
45451
37
BrainMap Database
44438
38
Melbourne Subcortex Atlas
44259
39
Network-Based Statistic (NBS)
41620
40
NeuroImaging Analysis Kit (NIAK)
41330
41
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
41220
42
Brain Biomechanics Imaging Resources
40384
43
EEGLAB
40131
44
DWI/DTI Quality Control Tool: DTIPrep
40098
45
UNC 0-1-2 Infant Atlases
38990
46
Graph Theory GLM (GTG) MATLAB Toolbox
38769
47
CBS High-Res Brain Processing Tools
38029
48
FreeSurfer
38008
49
TumorSim
36129
50
Homer2
33271
51
4D UNC Neonatal and Infant Cortical Surface Atlases
32377
52
NYU CSC TestRetest
31340
53
NeuroDebian
29756
54
BrainVisa Morphologist extensions
29653
55
SPHARM-PDM Toolbox
29530
56
Anima
29364
57
XNAT Extras
28549
58
ANDA
27803
59
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
25982
60
BrainMask Volume Processing Tool
25941
61
SRI24 Atlas: Normal Adult Brain Anatomy
25932
62
CANDI Neuroimaging Access Point
25908
63
Neuroimaging Made Easy Blog
25677
64
Multi-site Frequency Drift MR Spectroscopy
25615
65
ShapePopulationViewer
25017
66
3DSlicerLupusLesionModule
24319
67
AutoSeg
23875
68
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
23252
69
MRtrix
22862
70
Fast Nonlocal Means for MRI denoising
22121
71
Data Format Tools
22050
72
Vaa3D and Vaa3D-Neuron
21955
73
Awake Rat rsfMRI Database
21838
74
NeuroDOT
21731
75
Group ICA Toolbox (GIFT and EEGIFT)
20775
76
Hammer And WML Modules for 3D Slicer
20708
77
Surf Ice
20223
78
Mango
20062
79
Automatic Registration Toolbox
19781
80
Human Imaging Database (HID)
19338
81
Talairach Daemon
18979
82
Subject Order-Independent Group ICA
18915
83
MITK Diffusion
18788
84
ENIGMA-DTI pipeline
18772
85
3D Slicer
18619
86
ReproNim: A Center for Reproducible Neuroimaging Computation
18449
87
Freesurfer fsaverage
18367
88
Computational Morphometry Toolkit (CMTK)
18336
89
3DMeshMetric
18300
90
GRETNA
18170
91
DCP：Diffusion Connectome Pipeline
18119
92
BrainSuite
18082
93
Diffusion Toolkit / TrackVis
17742
94
MARS (Multi-Atlas Robust Segmentation)
17658
95
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
17647
96
Spatially Constrained Parcellation
17432
97
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
17086
98
Neurosynth Compose
16721
99
Maps4Mipav (Exploratory JIST)
16721
100
JIP fMRI Analysis Toolkit
16301