Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
944330
2
Nilearn
777086
3
ITK-SNAP
455559
4
BIDScoin
450372
5
FCP/INDI PRIVATE SITE
367110
6
IIT Human Brain Atlas (v.5.0)
207001
7
fMRI-CPCA
199811
8
MRIcroGL
195174
9
CONN : functional connectivity toolbox
185523
10
1000 Functional Connectomes Project
181408
11
BrainNet Viewer
108919
12
DTI-TK
93968
13
IBSR
80202
14
BioImage Suite
76548
15
Multi-Modal MRI Reproducibility Resource
72272
16
BXH/XCEDE Tools
71028
17
age-ility
69967
18
NIDB - Neuroinformatics Database
67236
19
WFU_PickAtlas
65514
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
58192
21
Solar Eclipse Imaging Genetics tools
53459
22
JIST: Java Image Science Toolkit
53015
23
The Neuro Bureau
49190
24
BrainFlow
48943
25
PANDA: a pipeline tool for diffusion MRI
48681
26
GIFTI
46922
27
3T DWI test-retest reliability dataset
42110
28
NITRC Computational Environment (NITRC-CE)
41633
29
Functional Imaging BIRN
41560
30
EEGLAB
40001
31
fNIRS Data Analysis Environment
39538
32
TOADS-CRUISE Brain Segmentation Tools
39269
33
FreeSurfer
37983
34
Generalized PPI Toolbox
36046
35
BrainMap Database
33499
36
Multimodal Visual Consciousness Study Dataset
30768
37
Network-Based Statistic (NBS)
30073
38
QuickNII - Serial section aligner to volumetric atlases
29092
39
Homer2
27663
40
UNC 0-1-2 Infant Atlases
26853
41
NeuroDebian
25907
42
Brain Biomechanics Imaging Resources
25686
43
Anima
25644
44
NYU CSC TestRetest
25387
45
BrainVisa Morphologist extensions
24893
46
XNAT Extras
22594
47
MIITRA atlas
20715
48
Melbourne Subcortex Atlas
19989
49
Neuroimaging Made Easy Blog
19788
50
CBS High-Res Brain Processing Tools
19297
51
Mango
18992
52
4D UNC Neonatal and Infant Cortical Surface Atlases
18413
53
Data Format Tools
18153
54
Surf Ice
18134
55
MITK Diffusion
18092
56
Automatic Registration Toolbox
17960
57
Vaa3D and Vaa3D-Neuron
17679
58
Fast Nonlocal Means for MRI denoising
17516
59
SRI24 Atlas: Normal Adult Brain Anatomy
17409
60
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
17329
61
GRETNA
17247
62
Group ICA Toolbox (GIFT and EEGIFT)
16319
63
CANDI Neuroimaging Access Point
16279
64
Diffusion Toolkit / TrackVis
15999
65
Talairach Daemon
15998
66
3D Slicer
15988
67
BrainMask Volume Processing Tool
15840
68
Spatially Constrained Parcellation
15804
69
DCP：Diffusion Connectome Pipeline
15457
70
Computational Morphometry Toolkit (CMTK)
15248
71
Freesurfer fsaverage
15211
72
3DSlicerLupusLesionModule
15141
73
DWI/DTI Quality Control Tool: DTIPrep
15112
74
BrainSuite
14817
75
NeuroImaging Analysis Kit (NIAK)
14574
76
Awake Rat rsfMRI Database
14443
77
Subject Order-Independent Group ICA
14245
78
TumorSim
14240
79
Human Imaging Database (HID)
14109
80
MRtrix
13830
81
Brainstorm
13829
82
Hammer And WML Modules for 3D Slicer
13742
83
FSL
13488
84
dcm2nii
13137
85
ENIGMA-DTI pipeline
13067
86
libminc - Medical Image NetCDF library
12814
87
Artifact Detection Tools (ART)
12719
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12712
89
SVNTest
12699
90
SPHARM-PDM Toolbox
11893
91
BrainVISA
11719
92
MARS (Multi-Atlas Robust Segmentation)
11490
93
NIfTI
11488
94
Graph Theory GLM (GTG) MATLAB Toolbox
11457
95
Task Independent Fluctuations Discussion
11445
96
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11409
97
Diffusional Kurtosis Estimator
11235
98
SPM for fNIRS toolbox
11110
99
2008 MICCAI MS Lesion Segmentation Challenge
11104
100
NODDI Matlab Toolbox
10913