Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.71%
  21000 Functional Connectomes Project97.07%
  3ITK-SNAP95.84%
  4BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6MRIcroGL92.69%
  7rapidtide92.34%
  8Rosetta Bit90.88%
  9SpiCoDyn90.60%
  10DTI-TK90.47%
  11Functional Mixed Processes Models89.05%
  12PANDA: a pipeline tool for diffusion MRI88.42%
  13Multi-Modal MRI Reproducibility Resource88.37%
  14MPScope88.22%
  15HippocampalUnfolding_ManualInitialization87.71%
  16BrainNet Viewer87.09%
  17TOADS-CRUISE Brain Segmentation Tools85.86%
  18CONN : functional connectivity toolbox85.83%
  19Cavernous Hemangioma: Epilepsy & ADD84.87%
  20CBICA: PREDICT84.68%
  21JIST: Java Image Science Toolkit84.66%
  22Kurtosis Imaging Network - KIN84.52%
  23CBICA: Brain Tumor Modeling - Coupled Solver84.40%
  24ITools Resourceome84.16%
  25Hadoop for data colocation84.04%
  26CBICA: Brain Anatomy Simulator83.98%
  27Functional Imaging BIRN83.92%
  28nonfractal83.87%
  29Local Label Learning (LLL) Segmentation83.13%
  30HD Neuro-Informatics83.02%
  31Infant Macaque MRI And DTI Templates82.26%
  32Lumina LP- 400 Response System82.21%
  33Philips Users Community82.17%
  34Brainstem Connectome Atlas82.03%
  35HERMES81.06%
  36NUTMEG80.78%
  37Vaa3D and Vaa3D-Neuron80.56%
  38ODIN80.52%
  39Stochastic Tractography System80.43%
  40NeuroDebian80.35%
  41Solar Eclipse Imaging Genetics tools80.03%
  42Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  43fMRIstat79.79%
  44Bayesian longitudinal low-rank regression79.68%
  45map3d79.67%
  46Turbo-BrainVoyager79.64%
  47DSI Studio79.08%
  48WFU_PickAtlas78.99%
  49MITK Diffusion78.98%
  50Seg3D78.68%
  51Ogles - OpenGL/OIV Stereotactic Tool78.64%
  52Umeå Brain Arteries78.64%
  53iView X MRI-LR - Eye Tracking for fMRI78.64%
  54L-Neuron78.49%
  55XCEDE Schema78.35%
  56BioSig78.08%
  57MASIMatlab78.06%
  58NITRC Image Repository (NITRC-IR)78.00%
  59Curry 777.81%
  60GazeReader77.81%
  61Functional ROI Atlas77.78%
  62BluePyOpt77.70%
  63SurfStat77.60%
  643T DWI test-retest reliability dataset77.56%
  65CBRAIN77.49%
  66GPU based affine registration77.46%
  67ConWhAt - A library for Connectome-Based White Matter Atlas analysis77.34%
  68FieldTrip77.34%
  69Biomag Discussion Group on Yahoo77.32%
  70GIFTI77.27%
  71VALiDATe29 squirrel monkey brain atlas77.21%
  72XNBC77.14%
  73CBICA: Chimera77.05%
  74Brede Toolbox77.01%
  75EEG Toolbox76.93%
  76HCP Harvard/MGH-UCLA76.85%
  77EEProbe76.84%
  78epi-example-dicom76.63%
  79E-Prime Extensions for fMRI76.62%
  80National Database for Autism Research76.52%
  81TurtleSeg76.48%
  82MindSeer76.42%
  83COINS76.26%
  84EONS76.25%
  85Insight Toolkit76.17%
  86Spatial Analysis 3D76.15%
  87ASA - Advanced Source Analysis76.11%
  88NIPY Diffusion Imaging Analysis76.10%
  89Brain Products' EEG/fMRI Hardware76.05%
  90Cytoseg75.83%
  91HCP WU-Minn Consortium75.77%
  92In vivo MEMRI-based Rat Brain Atlas75.71%
  93NICE-SIGN75.68%
  94MNI Macaque Atlases75.65%
  95GesTr75.60%
  96cmrep75.59%
  97ParaView75.52%
  98PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  99dcm2nii75.40%
  100Framework for Open Programmatic Access75.38%
  101LIBEEP75.38%
  102NIPY File IO75.18%
  103Micro-Manager75.17%
  104CBICA: PORTR75.13%
  105A robust method for correcting partial volume effect in ASL data75.12%
  106NFT: Neuroelectromag Forward Modeling75.04%
  107CBICA: ODVBA74.97%
  108Brainsight74.90%
  109Faceted Search Based Ontology Visualizer74.89%
  110INCF Neuroimaging Data Sharing74.89%
  111Net Station74.81%
  112UCLA Multimodal Connectivity Database74.77%
  113FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  114brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  115EEGVIS74.66%
  116ProbabilisticBiasCorrection74.60%
  117I/OWA 374.57%
  118dtiBrainScope74.54%
  119DICOM_UploadGUI74.52%
  120Generalized PPI Toolbox74.50%
  121Connectome File Format (CFF)74.48%
  122APERTURE74.44%
  123mask_explorer74.44%
  124Bisque74.41%
  125BrainLiner.jp74.34%
  126Advanced Normalization Tools74.32%
  127nitime74.27%
  128INVIZIAN74.26%
  129Anatomist74.21%
  130NordicNeuroLab74.14%
  131XCEDE Schema74.09%
  132Presentation74.05%
  133connectir74.03%
  134NC-IGT Fast Imaging Library74.00%
  135Age Related Atrophy Dataset74.00%
  136ERPLAB73.92%
  137VIEWPixx73.91%
  138CANDI Share: Schizophrenia Bulletin 200873.91%
  139Triangle BioSystems73.89%
  140BrainMaps.org73.86%
  141Nilearn73.82%
  142Pydicom73.82%
  143The fMRI Data Center73.82%
  144PySurfer73.76%
  145fMRI-CPCA73.62%
  146NITRC Community73.54%
  147XNAT Extras73.53%
  148Statistics Online Computational Resource73.45%
  149MINC - Medical Image NetCDF73.44%
  150TARQUIN MRS analysis package73.40%
  151NIRx NIRS Neuroimaging73.39%
  152CBICA: Datasets73.38%
  153Surf Ice73.37%
  154PyNIfTI73.36%
  155COGNISION (TM) System73.25%
  156OpenElectrophy73.22%
  157Neuroimaging Made Easy Blog73.20%
  158NIPY Community73.20%
  159PVS_Enhance72.99%
  160NeuroScope72.95%
  161ASL data processing tool box72.94%
  162MagPro Magnetic Stimulator (TMS)72.94%
  163Lipsia72.87%
  164MedINRIA72.87%
  165Network-Based Statistic (NBS)72.82%
  166Mouse Connectome Project (MCP)72.79%
  167Fiber Tracking Tool72.78%
  168Fiber-tracking based on Finsler distance72.78%
  169SumsDB Database72.73%
  170Celeritas: Fiber Optic Response System72.72%
  171CUDA accelerated spherical model M/EEG72.66%
  172False Discovery Rate Weighted72.64%
  173DATAPixx72.63%
  174OpenFMRI72.62%
  175DONE: Detection of Outlier NEurons72.55%
  176ArtRepair for robust fMRI72.45%
  177WhiteText - annotated neuroscience text72.44%
  178NIPY Structural and Functional Analysis72.36%
  179CLEAVE: Large Data Set ANOVA72.21%
  180scikit-learn72.17%
  181Mag Design and Engineering72.10%
  182Working Memory Trainer72.06%
  183PPMI72.00%
  184SFMProject71.92%
  185Computational Morphometry Toolkit (CMTK)71.88%
  186vuTools71.88%
  187Hitachi Optical Topography System71.88%
  188BRAINSConstellationDetector71.85%
  189EEGLAB71.75%
  190Hyperion: MRI Digital Projection System71.59%
  191BioImage Suite71.54%
  192ShapeViewer71.52%
  193Normative Independent Component Analysis71.48%
  194LDDMM71.43%
  195fNIR Devices71.38%
  196OpenMEEG71.38%
  197TORTOISE71.25%
  198NeuroElf71.23%
  199ADNI71.16%
  2004D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  201COST71.02%
  202Data Format Tools70.89%
  203NeuroSynth70.83%
  204Viking Viewer for Connectomics70.74%
  205SR Research EyeLink Eye Trackers70.67%
  206GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity70.67%
  207LONI Provenance Editor70.63%
  208CoCoMac Brain Connectivity Database70.62%
  209Waxholm Space Atlas of the Sprague Dawley Rat Brain70.61%
  210MazeSuite70.54%
  211BrainBrowser70.49%
  212Pipeline Neuroimaging VirtualEnvironment70.41%
  213ENIGMA-DTI pipeline70.37%
  214Biomedical Informatics Research Network70.34%
  215BrainVisa Morphologist extensions70.09%
  216UNC 4D Infant Cortical Surface Atlas70.07%
  217Open Connectome Project70.04%
  218REST: a toolkit for resting-state fMRI69.97%
  219OEI fMRI compatible olfactometer69.96%
  220MRI Brain Template and Atlas of the Mouse Lemur Primate Microcebus murinus69.81%
  221Journals69.76%
  222Fast Fourier Transform (FFT) JavaLibrary69.75%
  223Laboratory of Neuro Imaging (LONI)69.74%
  224IMOD - 3D Reconstruction and Analysis69.72%
  225Primatologist69.64%
  226Source Information Flow Toolbox69.50%
  227Mouse BIRN69.44%
  228BrainGraph Editor 1.0 Beta69.44%
  229UNC 0-1-2 Infant Atlases69.19%
  230LIMO EEG69.17%
  231Center for Computational Biology (CCB)69.15%
  232PICASSO skull stripping tool69.01%
  233FADTTSter68.99%
  234Synchronized Histological Image View Arc68.86%
  235cbiNifti: Matlab/Octave Nifti library68.82%
  236Analyze68.78%
  237DPARSF68.68%
  238Textpresso - literature search engine68.67%
  239NeuroshareLibrary68.65%
  240The Neuro Bureau68.63%
  241SMAC: Spatial Multi-category Angle-based Classifier68.62%
  242Homer268.59%
  243E-Prime68.58%
  244MRI Simulator68.50%
  245BrainMap Database68.44%
  246BrainVISA68.19%
  247PsychoPy68.14%
  248CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  249Grantees Meeting for NITRC68.08%
  250Create DWI Atlas67.98%
  251UNC/Utah NAMIC DTI Fiber Analysis Framework67.77%
  252BrainMagix SPM Viewer67.70%
  253BioMesh3D67.70%
  254Multiscale Weighted Principal Component Regression67.66%
  255NeuroWeb - NeuroImaging Database67.63%
  256NeuriteTracer67.45%
  257MultiTracer version 267.40%
  258dinifti67.32%
  259Challenge Competitions Collection67.26%
  260Low Resolution Brain Electromagnetic Tomography67.25%
  261N2A67.19%
  262Brede Wiki67.00%
  263SCIRun66.94%
  264IIT Human Brain Atlas (v.4.1)66.85%
  265Rockland Download Link Script66.78%
  266Mango66.70%
  267Spatially Constrained Parcellation66.70%
  268MEGSIM66.69%
  269UNC-Wisconsin Neurodevelopment Rhesus MRI Database66.64%
  270Signed Differential Mapping66.55%
  271NIPY Pipeline and Interfaces66.47%
  272CAMINO-TRACKVIS66.47%
  273HDBIG66.40%
  2743D Slicer66.30%
  275ImageVis3D66.18%
  276BrainMask Volume Processing Tool65.65%
  277HFH_DTI_DATA65.62%
  278Books65.58%
  279Augmented Reality Mirror65.53%
  280Group Level Imputation of Statistic Maps65.49%
  281Connectome Viewer65.38%
  282NCANDA: Data Integration Component65.38%
  283SCRalyze65.38%
  284ShapeTools65.31%
  285MRBrainS Evaluation Framework / Challenge65.15%
  286ExPosition Packages65.09%
  287MRI_CVPR65.08%
  288fNIRS Data Analysis Environment64.98%
  289NIREP64.96%
  290Parkinson's Disease Discovery Database64.60%
  291Longitudinal neuroimaging hippocampal markers for diagnosing Alzheimer's disease64.48%
  292Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  293SPM for fNIRS toolbox64.17%
  294Diffusion Warp64.08%
  295A 3T probabilistic Locus Coeruleus atlas64.02%
  296MARS (Multi-Atlas Robust Segmentation)63.98%
  297Anima63.78%
  298Non-rigid groupwise registration method63.75%
  299Diffusion Toolkit / TrackVis63.67%
  300Web Interfaces for Multiscale Images63.57%
  301MarsBaR region of interest toolbox63.54%
  302Temporal-lobe.com63.32%
  303Framewise Integrated Real-time MRI Monitoring63.26%
  304NeoSegPipeline63.20%
  305Brain Entropy in space and time (BEst)63.14%
  306FSL extensions63.14%
  307Hammer And WML Modules for 3D Slicer63.09%
  308Medical Image Visualization and Analysis63.06%
  309AFNI63.05%
  310Nighres62.84%
  311Prospective Acquisition CorrEction (PACE) Resting State EPI data62.74%
  312Neuroimaging Data Access Group62.68%
  313The Cognitive Atlas62.43%
  314CBICA: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters (MUSE)62.31%
  315Tractography based on Riemannian geodesics and tensor adjugates62.21%
  316The UNC EBDS neonatal DTI fiber atlas61.82%
  317Mindboggle-101 manually labeled brains61.81%
  318Monte Carlo Simulation Software: tMCimg61.67%
  319Neural ElectroMagnetic Ontologies61.65%
  320PubBrain Database61.64%
  321MoTrak: Head Motion Tracking System61.63%
  322Talairach Daemon61.62%
  323GRETNA61.58%
  324Rodent Cortical Thickness Analysis61.39%
  325IBSR61.38%
  326CBICA: PHI Estimator61.34%
  327NeuroImaging Analysis Kit (NIAK)61.16%
  328CIGAL61.11%
  329Mesh-based Monte Carlo (MMC)60.92%
  330MRtrix60.91%
  331MRI denoising60.63%
  332CBICA: MOE60.58%
  333Neuroinformatics - The Journal60.36%
  334CBICA: DTIDROID60.27%
  335CBICA: GONDOLA60.17%
  336Monte Carlo eXtreme (MCX)60.16%
  337IATR60.11%
  338Automatic Registration Toolbox59.90%
  339Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  340Neoseg59.61%
  341Human Imaging Database (HID)59.43%
  342iso2mesh59.41%
  343SPHARM-PDM Toolbox59.40%
  344BraTumIA (Brain Tumor Image Analysis)59.39%
  345Functional Connectivity Community59.20%
  346BRAINSSurfaceStats59.18%
  347Progression Score Model Toolkit59.14%
  348TAPIR58.98%
  349Statistical Methods for Manifold-valued Data58.97%
  350University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software58.93%
  351NIRAL Utilities58.71%
  352TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA58.60%
  353QModeling58.20%
  3542008 MICCAI MS Lesion Segmentation Challenge58.20%
  355Scalable Brain Atlas58.15%
  356Disease State Prediction58.15%
  357BrainVoyager58.01%
  358Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  359pyxnat57.94%
  360Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  361FSL57.61%
  362Denoising of redundant MR series57.35%
  363BiofilmQuant57.09%
  364BRAINSTools57.00%
  365NITRC Computational Environment (NITRC-CE)56.72%
  3663DSlicerLupusLesionModule56.72%
  367VectorValuedHistogramNormalizer55.65%
  368AutoTract55.51%
  369Center for Functional Neuroimaging Tech55.44%
  370Spinal Cord Toolbox55.13%
  371International Imaging Genetics Conference54.88%
  372Draw3D and Meshinator54.46%
  373DTIProcess ToolKit54.23%
  374TumorSim54.18%
  375Group ICA Toolbox (GIFT and EEGIFT)54.14%
  376Mayo Clinic Adult Lifespan Template and Atlases53.89%
  377DTI Connectome Pipeline53.76%
  378PD RS-fMRI meta and validation53.75%
  379VMTK in 3D Slicer53.66%
  380Subject Order-Independent Group ICA53.19%
  381NIfTI53.13%
  382Group Sparse Canonical Correlation Analysis53.13%
  383Diffusional Kurtosis Estimator53.08%
  384MCIC- schizophrenic and matched control data53.00%
  385Artifact Detection Tools (ART)52.94%
  3863d Brain Atlas Reconstructor52.90%
  387CBS High-Res Brain Processing Tools52.82%
  388C-PAC52.38%
  389ANTsR52.31%
  390BrainVoyager Brain Tutor52.24%
  391STAMP Atlases for Brain Abnormality Detection52.19%
  392SpineSegmentation module for 3DSlicer51.99%
  393EEG human categorization data51.96%
  394Licensing51.93%
  395fMRI Results Comparison Library51.64%
  396PhysIO Toolbox51.60%
  397Parallel Stochastic Ion Channel Simulator51.43%
  398The Grid Code Analysis Toolbox (GridCAT)51.33%
  399MRI Defacer51.23%
  400NYU CSC TestRetest51.02%
  401VANDPIRE50.79%
  402LONI Pipeline Environment50.67%
  403BRAINSMush50.66%
  404A probabilistic subcortical atlas for PD50.62%
  405factory_t1_dti50.47%
  406Lightweight Data Pipeline50.41%
  407ABSORB for groupwise registration50.16%
  408Segmentation-based Multimodal Rigid Image Registration49.98%
  409shapeAnalysisMANCOVA - SPHARM tools49.87%
  410ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  411ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  412CANDI Neuroimaging Access Point49.40%
  413MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  414Multiple Correlation Function Tool48.96%
  415Waxholm Space Atlas of the C57BL/6J Mouse Brain48.96%
  416Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations48.93%
  417Pipeline system for Octave and Matlab48.89%
  418Epsilon Radial Networks48.81%
  419Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  420Single-subject Resting state fMRI Reproducibility Resource48.62%
  421Maps4Mipav (Exploratory JIST) 48.61%
  422GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  423NODDI Matlab Toolbox48.49%
  424SIVIC48.42%
  425Conferences, Workshops and Meetings48.24%
  426ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis48.19%
  427PREDiCT48.15%
  428Simple Medical Imaging Library Interface (SMILI)48.07%
  429Gibbsconnectome47.98%
  430BXH/XCEDE Tools47.87%
  431ANIMA47.79%
  432UNC CEDARS INFANT ATLAS47.68%
  433GenGen47.52%
  434BRAINSFit47.32%
  435DWI/DTI Quality Control Tool: DTIPrep47.28%
  436fNIRS Research Database47.26%
  437The Cancer Imaging Archive (TCIA)47.14%
  438BrainSuite47.08%
  439Graph Theory GLM (GTG) MATLAB Toolbox46.81%
  440Mixed Effect Model of Genetic-Set and Environment Interaction46.67%
  441MRI Dataset for Hippocampus Segmentation46.59%
  442CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)46.52%
  443Task Independent Fluctuations Discussion46.52%
  444ATPP: Automatic Tractography-based Parcellation Pipeline46.43%
  445Local Manifold Learning for Multi-atlas segmentation46.38%
  446SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation46.26%
  447FBIRN Image Processing Scripts (FIPS)46.14%
  448GIMME (Group Iterative Multiple Model Estimation)45.91%
  449BetA-Series COrrelation45.63%
  450Diffusion MRI @ DKFZ Heidelberg45.52%
  451Robust Brain Extraction (ROBEX)45.43%
  452FreeSurfer45.38%
  453PESTICA & SLOMOCO: physio and motion correction tools45.38%
  454isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab45.31%
  455MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data45.11%
  456Statistical Methods for Heterogeneous Neuroimaging Data45.03%
  457Generation R Pediatric MRI Resources44.99%
  458Vervet Probabilistic Atlas44.95%
  459Best Practices for Software Development44.91%
  460Spanish Resting State Network44.84%
  461NeuroImage Field-of-View Normalization Tool44.45%
  462Bayesian Connectivity Analysis software (BCA)44.44%
  463Imeka Tractography Service44.35%
  464Phoneme-Syllable Tsinghua University CS&T 201143.96%
  465Optseq - fMRI Event Scheduler43.93%
  466Wisconsin White Matter Hyperintensities Segmentation Toolbox43.88%
  467EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  468In vivo MEMRI-based Mouse Brain Atlas43.68%
  469AHEAD43.67%
  470Magnetic Resonance Angiography Atlas Dataset43.49%
  471Preprocessed Connectomes Project43.46%
  472QCQP43.44%
  473Human Connectome Project (HCP)43.41%
  474Multicomponent T2 estimation with stimulated echo correction43.38%
  475FMRIpower43.32%
  476MATLAB Tutorial on Diffusion Tensor MRI43.30%
  477Brain Connectivity Toolbox43.22%
  478SRI24 Atlas: Normal Adult Brain Anatomy43.00%
  479Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  480CBICA: Multi Atlas Skull Stripping (MASS)42.75%
  481Atlasing of the basal ganglia42.58%
  482Brainnetome DiffusionKit42.56%
  483BRAINSROIAuto42.50%
  484Graphtools42.47%
  485NIDB - Neuroinformatics Database42.27%
  486SLIC: a whole brain parcellation toolbox42.22%
  487ShapeComplexityIndex41.87%
  488SPM41.84%
  489MIRCen Macaca fascicularis brain MRI segmentation dataset41.75%
  490MONSTR Multi Contrast Brain Stripping41.75%
  491iBEAT41.68%
  492S-rep Fitting, Statistics, and Segmentation41.49%
  493Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function41.49%
  494YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  495Brainance DTI Module41.33%
  496ABC (Atlas Based Classification)41.24%
  497REX41.17%
  498NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space41.16%
  499age-ility41.04%
  500Cluster reporter41.03%
  501Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  502HAMMER: Deformable Registration40.91%
  503Neurolucida40.86%
  504Brainnetome fMRI toolkit40.46%
  505CBFBIRN40.45%
  506Stereo Investigator40.09%
  507Tissue Thickness Estimation via Minimum Line Integrals40.03%
  5087T Structural MRI scans ATAG39.84%
  509UNC detail-preserved longitudinal 0-3-6-9-12 months-old atlas39.37%
  510POS2SPM39.14%
  511Quantitative Diffusion Tools39.01%
  512Zebrafish heart segmentation38.84%
  513SegEditing38.76%
  514FiberViewerLight38.56%
  515DTI-TEMPLATE-RHESUS-MACAQUES38.53%
  516XNAT38.40%
  517S3DL Sparse Dictionary Learning based MR Image and Lesion Segmentation38.29%
  518Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)38.26%
  519Functional Analysis of Diffusion Tensor38.03%
  520Fast Nonlocal Means for MRI denoising37.69%
  521A Shimadzu to .nirs data converter37.63%
  522VAMCA Cortical Meta-analysis Toolbox37.53%
  523LONI Debabeler37.21%
  524DTI Atlas Builder37.04%
  525BrainCSI37.02%
  526masked ICA (mICA) Toolbox36.66%
  527DTI-Reg36.47%
  528GLIRT36.43%
  529CutNII - Custom-angle slicer for brain atlas volumes36.41%
  530Stark Cross-Sectional Aging35.22%
  531Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration35.09%
  532AMILab35.01%
  533AutoSeg34.98%
  534JIST Resources for Algorithm Development34.94%
  535Task-based fMRI atlases34.90%
  536RapidArt34.88%
  537JIP fMRI Analysis Toolkit34.53%
  538GTRACT34.29%
  539CIFTI Connectivity File Format34.23%
  540Emory-UNC Developmental Macaque Structural and DTI Atlases34.06%
  541cPPI Toolbox for fMRI33.81%
  542The De-identification Toolbox - A data sharing tool for neuroimaging studies33.81%
  543MABMIS: Multi-Atlas Based Segmentation33.64%
  544BrainSolution33.51%
  545DicomBrowser33.19%
  546PyMVPA33.13%
  547MRIcroS33.02%
  548DRAMMS Deformable Image Registration Toolbox32.94%
  549MriWatcher32.69%
  550ICA Components from Kessler, et al, JAMA Psychiatry 201632.68%
  551Brainscape32.68%
  552MPI-Leipzig Mind-Brain-Body Dataset32.65%
  553Computational Anatomy Toolbox - CAT32.57%
  554Clinical Toolbox for SPM32.49%
  555DTI denoising32.30%
  5563-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood32.19%
  557CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.31.98%
  558Diffusion Tractography with Kalman Filter31.27%
  559ADJUST - EEG Automatic Artifact Removal31.27%
  560High-quality diffusion-weighted imaging of Parkinson's disease31.16%
  561ShapeWorks31.01%
  562Slicer3 Example Modules31.01%
  563Cerebellar White Matter Atlas30.79%
  564GIMIAS30.79%
  565Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)30.76%
  566ASHS: Automatic Segmentation of Hippocampal Subfields30.71%
  567Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  568MRTool30.27%
  569peak_nii30.17%
  570BASH4RfMRI29.93%
  571Program for optimal design of blocked fMRI experiments29.83%
  572Functional Connectivity Analysis Tool for near-infrared spectroscopy data29.83%
  573MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis29.75%
  574NITRC GForge Extensions29.67%
  575HAMMER Suite29.61%
  576Manually Labeled MRI Brain Scan Database29.59%
  577NPTK29.57%
  578MRI Studio29.41%
  579DFBIdb29.33%
  580Paradigm29.25%
  581GAMBIT29.23%
  582SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  583Templates for In vivo Mouse Brain29.20%
  584MIPAV29.03%
  585INSTAR (Infant Joint Segmentation and Registration)28.85%
  586NIH Pediatric MRI Data Repository28.70%
  587Image Synthesis28.34%
  588Corpus Callosum Thickness Profile Analysis Pipeline28.32%
  589UNC Human Brain Atlas28.16%
  590NIH-CIDI Lung Segmentation Tool28.10%
  591Mid-Space-Independent Deformable Image Registration28.03%
  592Numerical Fibre Generator (NFG)27.99%
  593SkullStrippingToolkit27.85%
  594Group Information Guided ICA27.84%
  595Colin 3T/7T High-resolution Atlas27.71%
  596DICOMConvert27.64%
  597PHYCAA+: adaptive physiological noise correction for BOLD fMRI27.63%
  598A label fusion using CRF27.43%
  599Hierarchical Functional Networks in Resting State fMRI27.37%
  600R-package for adaptive DWI analysis27.31%
  601HI-SPEED Software Packets27.13%
  602fMRI Grocer26.96%
  603MisterI26.85%
  604SPHARM-MAT26.83%
  605CleanLine26.56%
  606Template Image Processing Library26.35%
  607CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)26.30%
  608DTI Fiber Tract Statistics26.27%
  609eConnectome26.13%
  610DW-MRI registration in FSL26.12%
  611ToolConnect26.09%
  612ARCTIC25.99%
  613Robust Biological Parametric Mapping25.95%
  614Brainnetome Atlas Viewer25.84%
  615HFH_DTI_TLE_TOOLS25.81%
  616Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)25.65%
  617Deformable Template Model for Brain Analysis25.65%
  618Brainstorm25.60%
  619Convert MNI coordinates to or from XYZ25.60%
  620BrainVoyager Viewer25.56%
  621C8: Corpus Callosum Computations25.54%
  622BrainParser25.52%
  623MeshValmet: Validation Metric for Meshes25.23%
  624Gradient Non-linearity Unwarping Tool24.70%
  625LORIS24.52%
  626WFU_Pipeline24.51%
  6273DMeshMetric24.46%
  628ShapePopulationViewer24.44%
  629HistoloZee - 3D histology reconstruction and co-registration with MRI24.36%
  630MR Connectome Automated Pipeline (MRCAP)24.31%
  631Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography24.27%
  6323T MRI data set on structural brain-behavior correlations24.24%
  633Multi-fiber Reconstruction from DW-MRI24.16%
  634MIView24.12%
  635Finsler tractography module for Slicer24.11%
  636Simulated Diffusion-Weighted Datasets24.11%
  637Automatic Segmentation Tool Adapter23.88%
  638WFU_BPM23.77%
  639GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data23.74%
  640FVGWAS: Fast Voxelwise Genome Wide Association Analysis23.62%
  641MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation23.57%
  642MNE - Minimum Norm Current Estimates23.48%
  643TetraMetrix23.42%
  644R-package for adaptive fMRI analysis23.38%
  645Diffusion MRI - In-vivo and Phantom Data23.20%
  646Functional Regression Analysis of DTI23.20%
  647Morphometry BIRN23.14%
  648MASI Label Fusion23.09%
  649B0 and eddy current correction for DTI23.07%
  650ProCTSeg23.03%
  651aBEAT22.99%
  652RFT_FDR22.92%
  653SnPM22.86%
  654NiiStat22.84%
  655minc-toolkit22.81%
  656OASIS22.75%
  657CCSeg - Corpus Callosum Segmentation22.42%
  658JHU Proj. in Applied Medical Imaging22.20%
  659POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  660volBrain: online MRI segmentation22.02%
  661Web Game for Collaborative Labeling21.93%
  662UManitoba-JHU Functionally-Defined Human White Matter Atlas21.85%
  663Iterative dual-regression with sparse prior21.85%
  664Estimating Functional Brain Network based on Modularity Prior21.77%
  665Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising21.76%
  666Inter-Group Registration Toolbox21.63%
  667LONI Inspector21.50%
  6684D Atlas Construction21.36%
  669Notion ResearchPACS21.34%
  670Camino21.25%
  671DOTS WM tract segmentation21.20%
  672PICSL Multi-Atlas Segmentation Tool21.15%
  673BTK : Baby Brain Toolkit21.11%
  674xjView, a viewing tool for SPM21.11%
  675Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data21.10%
  676Spatial Statistical Parametric Mapping21.08%
  677Slicer3 Module Rician noise filter21.06%
  678SOCK20.83%
  679Standard Amygdalar fMRI Probe Tasks20.76%
  680Elastic Net-based Parcellation (ENPA)20.68%
  681MGH Neonatal/Pediatric ADC atlases20.64%
  682VoxBo20.55%
  683freesurfR20.36%
  684cortex20.31%
  685Longitudinal Multiple Sclerosis Lesion Imaging Archive20.24%
  686Corpus callosum and brain segmentations from ABIDE database20.19%
  687DentalTools20.18%
  688Efficient Permutation Testing19.86%
  689NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.83%
  690Ultra-high field atlas for DBS planning19.80%
  691STAPLE19.73%
  692A joint sparse partial correlation method for estimating group functional networks19.69%
  693GAMMA19.61%
  694Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation19.48%
  695imcalc: SPM batch image calulator19.40%
  696Generalized Covariance Analysis (gCVA)19.31%
  697Fusion ICA Toolbox (FIT)19.13%
  698NIRx2nirs: A NIRx to .nirs data converter19.00%
  699INIA19 Primate Brain Atlas18.91%
  700ALVIN - Lateral Ventricle Segmentation18.88%
  701Hitachi2nirs18.78%
  702MOCA18.76%
  703Parallel Graph-theoretical Analysis Toolkit18.74%
  704Connectome Workbench18.58%
  705FIV18.55%
  706Randomized Denoising Autoencoders for Neuroimaging18.34%
  707Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.25%
  708Displacement Field Viewer18.24%
  709BrainNetworkConstructionAnalysisPlatform18.16%
  710AtlasConstructionToolkit17.97%
  711DW-MRI Random Walk Simulator17.93%
  712Landman NeuroImaging Tools17.93%
  713Resource Ontology Discussion Group17.91%
  714Penn Hippocampus Atlas17.89%
  715SINOMO (SIngular NOde MOtifs)17.84%
  716AURA tools : AUtomated Retinal Analysis tools17.83%
  717NVM17.81%
  718MouseBIRN Atlasing Toolkit (MBAT)17.55%
  719fMRI Classification in R17.15%
  720CMFreg17.02%
  721SPM_SS - fMRI functional localizers17.02%
  722Diffusion MRI Tool16.98%
  723CBICA: WMLS (White Matter Lesion Segmentation)16.93%
  724Brain Segmentation Testing Protocol16.91%
  725BCILAB16.51%
  726resting-state pediatric imaging template16.48%
  727Automated Image Registration (AIR)16.45%
  728MIAS Registration Toolkit16.33%
  729XFSL: An FSL toolbox16.24%
  730Jim15.85%
  731NIRS-SPM15.83%
  732ValMap: simple statistical mapping tool15.79%
  733NeuroLens15.78%
  734CoCoMac-Paxinos3D viewer15.74%
  735Wavelet-based Image Fusion15.54%
  736Segmentation Validation Engine15.51%
  737MGDM: Multi Geometric Deformable Model15.32%
  738IDeA Lab brain image processing suite15.26%
  739TractoR: Tractography with R15.18%
  740vis: SPM Visualized Statistics toolbox15.12%
  741DIAMOND15.11%
  742Internet Brain Volume Database (IBVD)15.02%
  743CBICA: COMPARE14.77%
  744CamBA14.72%
  745DICCCOL predictor (v0.1)14.71%
  746Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI14.42%
  747Brainwaver14.32%
  748Single-index Varying Coefficient Model for Functional Responses14.25%
  749MeshGen - Surface meshes from volumetric segmentation data14.20%
  750Level-set Segmentation for Slicer314.18%
  751Cluster Extent Correction14.17%
  752Measure Projection Toolbox (MPT)14.10%
  753MRI Neuroanatomy Labeling Services14.05%
  754Subject Library14.04%
  755The Brain Coactivation Map13.80%
  756LONI De-identification Debablet13.79%
  757Serotonin Transporter HighResolution PET Template13.64%
  758BrainDecoderToolbox13.51%
  759Microstructural correlation toolbox13.48%
  760NeuroPub Visualizer13.32%
  761BrainFX13.16%
  762Using Make for Neuroimaging Workflow: Manual and Examples13.09%
  763Kymata Atlas13.00%
  764mach2dat12.93%
  765N3 - MINC B0 nonuniformity correction12.85%
  766Pythagorean Displacement and Motion Regressors12.84%
  767gCCA12.60%
  768BrainVision Analyzer12.59%
  769Wisconsin Cortical Thickness Analysis (CTA) Toolbox12.58%
  770VarTbx – Variability Toolbox12.55%
  771mach2qtl12.43%
  772SVV12.37%
  773Brainvox12.36%
  774fanDTasia Java Applet: DT-MRI Processing12.34%
  775M311.92%
  776MouseTracker11.91%
  777MEG Tools11.48%
  778Rodent Brain Extraction Tool11.35%
  779Caret11.02%
  780CDF-HC PointSetReg10.99%
  781UNC Primate Brain Atlas10.92%
  782INCF10.90%
  783MaCH10.11%
  784MaCH-Admix9.989%
  785ShapeComplexAtlas9.721%
  786Distributome9.101%