Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
934420
2
Nilearn
733862
3
ITK-SNAP
451222
4
BIDScoin
397615
5
FCP/INDI PRIVATE SITE
359264
6
IIT Human Brain Atlas (v.5.0)
200099
7
fMRI-CPCA
197709
8
MRIcroGL
190398
9
CONN : functional connectivity toolbox
180662
10
1000 Functional Connectomes Project
180325
11
BrainNet Viewer
106078
12
DTI-TK
93217
13
IBSR
79158
14
BioImage Suite
75461
15
Multi-Modal MRI Reproducibility Resource
70754
16
age-ility
67503
17
BXH/XCEDE Tools
66510
18
WFU_PickAtlas
64937
19
NIDB - Neuroinformatics Database
61866
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
56015
21
Solar Eclipse Imaging Genetics tools
51734
22
JIST: Java Image Science Toolkit
51441
23
The Neuro Bureau
48242
24
PANDA: a pipeline tool for diffusion MRI
47969
25
GIFTI
45613
26
BrainFlow
43989
27
Functional Imaging BIRN
40516
28
3T DWI test-retest reliability dataset
40401
29
NITRC Computational Environment (NITRC-CE)
40348
30
EEGLAB
39965
31
TOADS-CRUISE Brain Segmentation Tools
38924
32
fNIRS Data Analysis Environment
38879
33
FreeSurfer
37979
34
Generalized PPI Toolbox
35353
35
BrainMap Database
32553
36
Network-Based Statistic (NBS)
28717
37
QuickNII - Serial section aligner to volumetric atlases
28032
38
Multimodal Visual Consciousness Study Dataset
27893
39
Homer2
27265
40
UNC 0-1-2 Infant Atlases
25759
41
NeuroDebian
25460
42
Anima
25254
43
NYU CSC TestRetest
25179
44
BrainVisa Morphologist extensions
24502
45
Brain Biomechanics Imaging Resources
24367
46
XNAT Extras
22075
47
Neuroimaging Made Easy Blog
19366
48
Melbourne Subcortex Atlas
19310
49
Mango
18852
50
MIITRA atlas
18807
51
CBS High-Res Brain Processing Tools
18458
52
MITK Diffusion
18048
53
Data Format Tools
17828
54
Automatic Registration Toolbox
17749
55
Surf Ice
17696
56
4D UNC Neonatal and Infant Cortical Surface Atlases
17338
57
Vaa3D and Vaa3D-Neuron
17219
58
Fast Nonlocal Means for MRI denoising
17180
59
GRETNA
17039
60
SRI24 Atlas: Normal Adult Brain Anatomy
16825
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
16003
62
3D Slicer
15855
63
Group ICA Toolbox (GIFT and EEGIFT)
15796
64
Diffusion Toolkit / TrackVis
15792
65
Talairach Daemon
15767
66
CANDI Neuroimaging Access Point
15733
67
Spatially Constrained Parcellation
15601
68
BrainMask Volume Processing Tool
15215
69
DCP：Diffusion Connectome Pipeline
15142
70
Computational Morphometry Toolkit (CMTK)
15033
71
3DSlicerLupusLesionModule
14725
72
Freesurfer fsaverage
14655
73
BrainSuite
14394
74
DWI/DTI Quality Control Tool: DTIPrep
14351
75
Brainstorm
13826
76
Human Imaging Database (HID)
13775
77
Awake Rat rsfMRI Database
13769
78
TumorSim
13740
79
Subject Order-Independent Group ICA
13650
80
MRtrix
13643
81
FSL
13283
82
Hammer And WML Modules for 3D Slicer
13101
83
dcm2nii
13089
84
NeuroImaging Analysis Kit (NIAK)
13072
85
libminc - Medical Image NetCDF library
12797
86
Artifact Detection Tools (ART)
12552
87
ENIGMA-DTI pipeline
12332
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12327
89
BrainVISA
11609
90
SVNTest
11443
91
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11314
92
NIfTI
11288
93
Task Independent Fluctuations Discussion
11199
94
SPHARM-PDM Toolbox
11196
95
Graph Theory GLM (GTG) MATLAB Toolbox
11142
96
MARS (Multi-Atlas Robust Segmentation)
11137
97
Diffusional Kurtosis Estimator
11090
98
2008 MICCAI MS Lesion Segmentation Challenge
11088
99
SPM for fNIRS toolbox
10998
100
NODDI Matlab Toolbox
10814