Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
BIDScoin
1203713
2
Nilearn
1198738
3
MRIcron
1040229
4
ITK-SNAP
484618
5
FCP/INDI PRIVATE SITE
409439
6
IIT Human Brain Atlas (v.5.0)
252795
7
CONN : functional connectivity toolbox
245732
8
MRIcroGL
217447
9
fMRI-CPCA
212442
10
1000 Functional Connectomes Project
186838
11
BrainNet Viewer
138922
12
BXH/XCEDE Tools
125327
13
NIDB - Neuroinformatics Database
115990
14
DTI-TK
100970
15
age-ility
100533
16
BioImage Suite
91302
17
Solar Eclipse Imaging Genetics tools
87730
18
IBSR
85896
19
BrainFlow
85348
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
84321
21
JIST: Java Image Science Toolkit
83498
22
Multi-Modal MRI Reproducibility Resource
81321
23
WFU_PickAtlas
67688
24
GIFTI
64512
25
NITRC Computational Environment (NITRC-CE)
62779
26
PANDA: a pipeline tool for diffusion MRI
58070
27
The Neuro Bureau
54564
28
3T DWI test-retest reliability dataset
53596
29
Multimodal Visual Consciousness Study Dataset
52934
30
Functional Imaging BIRN
52394
31
Standard Amygdalar fMRI Probe Tasks
51966
32
TOADS-CRUISE Brain Segmentation Tools
46781
33
Generalized PPI Toolbox
46549
34
QuickNII - Serial section aligner to volumetric atlases
45903
35
fNIRS Data Analysis Environment
44358
36
MIITRA atlas
41826
37
Network-Based Statistic (NBS)
40715
38
BrainMap Database
40590
39
EEGLAB
40123
40
NeuroImaging Analysis Kit (NIAK)
38560
41
FreeSurfer
38005
42
Brain Biomechanics Imaging Resources
37918
43
Melbourne Subcortex Atlas
36966
44
UNC 0-1-2 Infant Atlases
36909
45
Graph Theory GLM (GTG) MATLAB Toolbox
36652
46
DWI/DTI Quality Control Tool: DTIPrep
35360
47
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
33784
48
TumorSim
33493
49
CBS High-Res Brain Processing Tools
33273
50
Homer2
32483
51
NYU CSC TestRetest
29762
52
NeuroDebian
29188
53
Anima
28944
54
4D UNC Neonatal and Infant Cortical Surface Atlases
28921
55
BrainVisa Morphologist extensions
28856
56
XNAT Extras
27602
57
SPHARM-PDM Toolbox
26418
58
Neuroimaging Made Easy Blog
24603
59
SRI24 Atlas: Normal Adult Brain Anatomy
24349
60
BrainMask Volume Processing Tool
24184
61
ANDA
24040
62
CANDI Neuroimaging Access Point
23975
63
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
23528
64
ShapePopulationViewer
22720
65
3DSlicerLupusLesionModule
22516
66
Fast Nonlocal Means for MRI denoising
21499
67
Data Format Tools
21473
68
MRtrix
21467
69
Vaa3D and Vaa3D-Neuron
21287
70
Awake Rat rsfMRI Database
20287
71
Multi-site Frequency Drift MR Spectroscopy
20216
72
Group ICA Toolbox (GIFT and EEGIFT)
20076
73
AutoSeg
20054
74
Surf Ice
20023
75
Mango
19917
76
Hammer And WML Modules for 3D Slicer
19707
77
Automatic Registration Toolbox
19490
78
NeuroDOT
19275
79
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
18800
80
MITK Diffusion
18722
81
Human Imaging Database (HID)
18501
82
Subject Order-Independent Group ICA
18413
83
Talairach Daemon
18214
84
GRETNA
18095
85
ENIGMA-DTI pipeline
17875
86
DCP：Diffusion Connectome Pipeline
17846
87
3D Slicer
17602
88
Freesurfer fsaverage
17580
89
BrainSuite
17555
90
Diffusion Toolkit / TrackVis
17503
91
Computational Morphometry Toolkit (CMTK)
17403
92
Spatially Constrained Parcellation
17193
93
ReproNim: A Center for Reproducible Neuroimaging Computation
16920
94
MARS (Multi-Atlas Robust Segmentation)
16584
95
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
16276
96
3DMeshMetric
16015
97
Maps4Mipav (Exploratory JIST)
15366
98
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
15208
99
Nutil - Neuroimaging utilities
15093
100
FSL
15030