Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
BIDScoin
1275421
2
Nilearn
1226126
3
MRIcron
1045925
4
ITK-SNAP
487243
5
FCP/INDI PRIVATE SITE
412680
6
IIT Human Brain Atlas (v.5.0)
262274
7
CONN : functional connectivity toolbox
249192
8
MRIcroGL
219087
9
fMRI-CPCA
214847
10
1000 Functional Connectomes Project
187210
11
BrainNet Viewer
143587
12
BXH/XCEDE Tools
133075
13
NIDB - Neuroinformatics Database
120649
14
age-ility
112559
15
DTI-TK
101516
16
BioImage Suite
97341
17
Solar Eclipse Imaging Genetics tools
92336
18
BrainFlow
88722
19
JIST: Java Image Science Toolkit
87209
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
86841
21
IBSR
86609
22
Multi-Modal MRI Reproducibility Resource
82404
23
WFU_PickAtlas
67791
24
GIFTI
66878
25
NITRC Computational Environment (NITRC-CE)
65904
26
PANDA: a pipeline tool for diffusion MRI
59126
27
Multimodal Visual Consciousness Study Dataset
55382
28
The Neuro Bureau
55131
29
3T DWI test-retest reliability dataset
54594
30
Standard Amygdalar fMRI Probe Tasks
53992
31
Functional Imaging BIRN
53674
32
QuickNII - Serial section aligner to volumetric atlases
48763
33
TOADS-CRUISE Brain Segmentation Tools
47816
34
Generalized PPI Toolbox
47593
35
fNIRS Data Analysis Environment
44991
36
MIITRA atlas
44385
37
BrainMap Database
42107
38
Melbourne Subcortex Atlas
41742
39
Network-Based Statistic (NBS)
41208
40
NeuroImaging Analysis Kit (NIAK)
40268
41
EEGLAB
40128
42
Brain Biomechanics Imaging Resources
39179
43
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
38232
44
UNC 0-1-2 Infant Atlases
38222
45
DWI/DTI Quality Control Tool: DTIPrep
38219
46
Graph Theory GLM (GTG) MATLAB Toolbox
38121
47
FreeSurfer
38007
48
CBS High-Res Brain Processing Tools
35238
49
TumorSim
35064
50
Homer2
32985
51
4D UNC Neonatal and Infant Cortical Surface Atlases
31153
52
NYU CSC TestRetest
30572
53
NeuroDebian
29469
54
BrainVisa Morphologist extensions
29252
55
Anima
29185
56
SPHARM-PDM Toolbox
28495
57
XNAT Extras
28076
58
ANDA
26192
59
BrainMask Volume Processing Tool
25405
60
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
25343
61
SRI24 Atlas: Normal Adult Brain Anatomy
25337
62
Neuroimaging Made Easy Blog
25182
63
CANDI Neuroimaging Access Point
25166
64
ShapePopulationViewer
24349
65
3DSlicerLupusLesionModule
23703
66
Multi-site Frequency Drift MR Spectroscopy
23359
67
MRtrix
22445
68
AutoSeg
22294
69
Fast Nonlocal Means for MRI denoising
21884
70
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
21795
71
Data Format Tools
21784
72
Vaa3D and Vaa3D-Neuron
21610
73
Awake Rat rsfMRI Database
21127
74
NeuroDOT
20745
75
Group ICA Toolbox (GIFT and EEGIFT)
20524
76
Hammer And WML Modules for 3D Slicer
20320
77
Surf Ice
20121
78
Mango
19990
79
Automatic Registration Toolbox
19643
80
Human Imaging Database (HID)
19056
81
MITK Diffusion
18766
82
Subject Order-Independent Group ICA
18664
83
Talairach Daemon
18484
84
ENIGMA-DTI pipeline
18394
85
GRETNA
18134
86
3D Slicer
18114
87
Computational Morphometry Toolkit (CMTK)
18094
88
DCP：Diffusion Connectome Pipeline
17997
89
BrainSuite
17832
90
Freesurfer fsaverage
17808
91
ReproNim: A Center for Reproducible Neuroimaging Computation
17786
92
Diffusion Toolkit / TrackVis
17618
93
3DMeshMetric
17535
94
Spatially Constrained Parcellation
17317
95
MARS (Multi-Atlas Robust Segmentation)
17230
96
Automatic Extra-Axial Cerebrospinal Fluid (Auto EACSF)
16861
97
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
16743
98
Maps4Mipav (Exploratory JIST)
16206
99
JIP fMRI Analysis Toolkit
15861
100
Nutil - Neuroimaging utilities
15755