Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1132442
2
MRIcron
1026912
3
BIDScoin
999217
4
ITK-SNAP
480124
5
FCP/INDI PRIVATE SITE
401582
6
IIT Human Brain Atlas (v.5.0)
242609
7
CONN : functional connectivity toolbox
229725
8
MRIcroGL
214262
9
fMRI-CPCA
210763
10
1000 Functional Connectomes Project
186045
11
BrainNet Viewer
133425
12
BXH/XCEDE Tools
115929
13
NIDB - Neuroinformatics Database
106198
14
DTI-TK
99918
15
age-ility
92998
16
BioImage Suite
85528
17
IBSR
85109
18
Solar Eclipse Imaging Genetics tools
82905
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
80596
20
Multi-Modal MRI Reproducibility Resource
79590
21
JIST: Java Image Science Toolkit
78152
22
BrainFlow
77364
23
WFU_PickAtlas
67425
24
GIFTI
61706
25
NITRC Computational Environment (NITRC-CE)
59379
26
PANDA: a pipeline tool for diffusion MRI
56820
27
The Neuro Bureau
53493
28
3T DWI test-retest reliability dataset
51832
29
Functional Imaging BIRN
50831
30
Multimodal Visual Consciousness Study Dataset
48229
31
Standard Amygdalar fMRI Probe Tasks
47962
32
TOADS-CRUISE Brain Segmentation Tools
45410
33
Generalized PPI Toolbox
45129
34
fNIRS Data Analysis Environment
43527
35
QuickNII - Serial section aligner to volumetric atlases
43379
36
EEGLAB
40111
37
Network-Based Statistic (NBS)
39833
38
MIITRA atlas
39301
39
BrainMap Database
39256
40
FreeSurfer
38000
41
NeuroImaging Analysis Kit (NIAK)
36980
42
Brain Biomechanics Imaging Resources
35655
43
UNC 0-1-2 Infant Atlases
35510
44
Graph Theory GLM (GTG) MATLAB Toolbox
34173
45
DWI/DTI Quality Control Tool: DTIPrep
33010
46
TumorSim
31751
47
Homer2
31749
48
Melbourne Subcortex Atlas
31018
49
CBS High-Res Brain Processing Tools
30983
50
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
29113
51
NYU CSC TestRetest
28764
52
NeuroDebian
28640
53
BrainVisa Morphologist extensions
28133
54
Anima
28056
55
4D UNC Neonatal and Infant Cortical Surface Atlases
27024
56
XNAT Extras
26716
57
SPHARM-PDM Toolbox
24651
58
Neuroimaging Made Easy Blog
23921
59
SRI24 Atlas: Normal Adult Brain Anatomy
23187
60
BrainMask Volume Processing Tool
23015
61
CANDI Neuroimaging Access Point
22503
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
22403
63
ANDA
21141
64
3DSlicerLupusLesionModule
21037
65
Fast Nonlocal Means for MRI denoising
20934
66
Data Format Tools
20866
67
ShapePopulationViewer
20755
68
Vaa3D and Vaa3D-Neuron
20583
69
MRtrix
20210
70
Mango
19760
71
Surf Ice
19742
72
Group ICA Toolbox (GIFT and EEGIFT)
19510
73
Automatic Registration Toolbox
19237
74
Awake Rat rsfMRI Database
19129
75
Hammer And WML Modules for 3D Slicer
18789
76
MITK Diffusion
18546
77
AutoSeg
18374
78
Subject Order-Independent Group ICA
18104
79
GRETNA
17961
80
Multi-site Frequency Drift MR Spectroscopy
17901
81
Talairach Daemon
17828
82
Human Imaging Database (HID)
17669
83
DCP：Diffusion Connectome Pipeline
17557
84
NeuroDOT
17293
85
Diffusion Toolkit / TrackVis
17244
86
ENIGMA-DTI pipeline
17217
87
Freesurfer fsaverage
17189
88
BrainSuite
17082
89
Spatially Constrained Parcellation
16964
90
Computational Morphometry Toolkit (CMTK)
16891
91
3D Slicer
16685
92
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
16003
93
MARS (Multi-Atlas Robust Segmentation)
15899
94
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15676
95
ReproNim: A Center for Reproducible Neuroimaging Computation
15603
96
FSL
14895
97
3DMeshMetric
14608
98
Maps4Mipav (Exploratory JIST)
14608
99
Artifact Detection Tools (ART)
14197
100
ABSORB for groupwise registration
14063