Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
947786
2
Nilearn
883354
3
BIDScoin
510390
4
ITK-SNAP
458936
5
FCP/INDI PRIVATE SITE
371926
6
IIT Human Brain Atlas (v.5.0)
210361
7
fMRI-CPCA
204715
8
MRIcroGL
197316
9
CONN : functional connectivity toolbox
188657
10
1000 Functional Connectomes Project
181925
11
BrainNet Viewer
111088
12
DTI-TK
95198
13
IBSR
80419
14
BioImage Suite
77183
15
BXH/XCEDE Tools
73890
16
Multi-Modal MRI Reproducibility Resource
73378
17
age-ility
71707
18
NIDB - Neuroinformatics Database
71681
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66979
20
WFU_PickAtlas
65823
21
JIST: Java Image Science Toolkit
56970
22
Solar Eclipse Imaging Genetics tools
55927
23
BrainFlow
52926
24
The Neuro Bureau
49708
25
PANDA: a pipeline tool for diffusion MRI
49662
26
GIFTI
47665
27
Functional Imaging BIRN
44424
28
NITRC Computational Environment (NITRC-CE)
44324
29
3T DWI test-retest reliability dataset
43402
30
fNIRS Data Analysis Environment
40044
31
EEGLAB
40027
32
TOADS-CRUISE Brain Segmentation Tools
39730
33
FreeSurfer
37985
34
Generalized PPI Toolbox
36381
35
BrainMap Database
33930
36
Multimodal Visual Consciousness Study Dataset
33280
37
QuickNII - Serial section aligner to volumetric atlases
32580
38
Network-Based Statistic (NBS)
31429
39
MIITRA atlas
29594
40
UNC 0-1-2 Infant Atlases
29383
41
Homer2
27909
42
Brain Biomechanics Imaging Resources
27005
43
NeuroImaging Analysis Kit (NIAK)
26507
44
NeuroDebian
26226
45
Anima
26001
46
NYU CSC TestRetest
25592
47
BrainVisa Morphologist extensions
25348
48
TumorSim
23840
49
XNAT Extras
23513
50
DWI/DTI Quality Control Tool: DTIPrep
23417
51
Neuroimaging Made Easy Blog
21106
52
Graph Theory GLM (GTG) MATLAB Toolbox
21034
53
Melbourne Subcortex Atlas
20888
54
4D UNC Neonatal and Infant Cortical Surface Atlases
20092
55
CBS High-Res Brain Processing Tools
19735
56
Mango
19085
57
Data Format Tools
18352
58
Surf Ice
18271
59
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18161
60
MITK Diffusion
18137
61
Automatic Registration Toolbox
18116
62
Vaa3D and Vaa3D-Neuron
17997
63
SRI24 Atlas: Normal Adult Brain Anatomy
17788
64
Fast Nonlocal Means for MRI denoising
17699
65
BrainMask Volume Processing Tool
17347
66
GRETNA
17347
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16966
68
CANDI Neuroimaging Access Point
16634
69
Group ICA Toolbox (GIFT and EEGIFT)
16583
70
SPHARM-PDM Toolbox
16516
71
Talairach Daemon
16479
72
Diffusion Toolkit / TrackVis
16164
73
3D Slicer
16083
74
Spatially Constrained Parcellation
15947
75
Subject Order-Independent Group ICA
15734
76
DCP：Diffusion Connectome Pipeline
15642
77
Freesurfer fsaverage
15531
78
3DSlicerLupusLesionModule
15458
79
Computational Morphometry Toolkit (CMTK)
15388
80
BrainSuite
15100
81
Awake Rat rsfMRI Database
14909
82
Human Imaging Database (HID)
14668
83
Hammer And WML Modules for 3D Slicer
13998
84
MRtrix
13943
85
Brainstorm
13835
86
SVNTest
13756
87
FSL
13641
88
ENIGMA-DTI pipeline
13607
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13468
90
ShapePopulationViewer
13259
91
dcm2nii
13163
92
MARS (Multi-Atlas Robust Segmentation)
13044
93
Artifact Detection Tools (ART)
12841
94
libminc - Medical Image NetCDF library
12827
95
Nighres
12007
96
BrainVISA
11781
97
NIfTI
11774
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11704
99
Task Independent Fluctuations Discussion
11601
100
SPM for fNIRS toolbox
11483