Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
945176
2
Nilearn
793444
3
BIDScoin
459765
4
ITK-SNAP
456339
5
FCP/INDI PRIVATE SITE
368466
6
IIT Human Brain Atlas (v.5.0)
207914
7
fMRI-CPCA
200688
8
MRIcroGL
195773
9
CONN : functional connectivity toolbox
186221
10
1000 Functional Connectomes Project
181521
11
BrainNet Viewer
109516
12
DTI-TK
94712
13
IBSR
80246
14
BioImage Suite
76689
15
Multi-Modal MRI Reproducibility Resource
72647
16
BXH/XCEDE Tools
71685
17
age-ility
70343
18
NIDB - Neuroinformatics Database
68129
19
WFU_PickAtlas
65594
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
63140
21
Solar Eclipse Imaging Genetics tools
54974
22
JIST: Java Image Science Toolkit
54327
23
BrainFlow
49852
24
The Neuro Bureau
49250
25
PANDA: a pipeline tool for diffusion MRI
48783
26
GIFTI
47072
27
3T DWI test-retest reliability dataset
42395
28
Functional Imaging BIRN
42330
29
NITRC Computational Environment (NITRC-CE)
41973
30
EEGLAB
40007
31
fNIRS Data Analysis Environment
39661
32
TOADS-CRUISE Brain Segmentation Tools
39355
33
FreeSurfer
37983
34
Generalized PPI Toolbox
36117
35
BrainMap Database
33601
36
Multimodal Visual Consciousness Study Dataset
31314
37
Network-Based Statistic (NBS)
30418
38
QuickNII - Serial section aligner to volumetric atlases
29224
39
UNC 0-1-2 Infant Atlases
27829
40
Homer2
27720
41
NeuroDebian
25978
42
Brain Biomechanics Imaging Resources
25918
43
Anima
25712
44
NYU CSC TestRetest
25415
45
BrainVisa Morphologist extensions
24968
46
XNAT Extras
22772
47
MIITRA atlas
21047
48
Neuroimaging Made Easy Blog
20424
49
Melbourne Subcortex Atlas
20181
50
CBS High-Res Brain Processing Tools
19395
51
Mango
19010
52
4D UNC Neonatal and Infant Cortical Surface Atlases
18519
53
Data Format Tools
18189
54
Surf Ice
18169
55
MITK Diffusion
18104
56
Automatic Registration Toolbox
17993
57
Vaa3D and Vaa3D-Neuron
17738
58
Fast Nonlocal Means for MRI denoising
17554
59
SRI24 Atlas: Normal Adult Brain Anatomy
17493
60
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
17481
61
DWI/DTI Quality Control Tool: DTIPrep
17302
62
GRETNA
17272
63
NeuroImaging Analysis Kit (NIAK)
17131
64
BrainMask Volume Processing Tool
16655
65
Group ICA Toolbox (GIFT and EEGIFT)
16426
66
CANDI Neuroimaging Access Point
16350
67
Talairach Daemon
16204
68
Diffusion Toolkit / TrackVis
16030
69
3D Slicer
16010
70
Spatially Constrained Parcellation
15835
71
DCP：Diffusion Connectome Pipeline
15496
72
SPHARM-PDM Toolbox
15350
73
Computational Morphometry Toolkit (CMTK)
15288
74
Freesurfer fsaverage
15282
75
3DSlicerLupusLesionModule
15182
76
BrainSuite
14887
77
TumorSim
14562
78
Awake Rat rsfMRI Database
14544
79
Subject Order-Independent Group ICA
14431
80
Human Imaging Database (HID)
14154
81
MRtrix
13844
82
Brainstorm
13830
83
Hammer And WML Modules for 3D Slicer
13785
84
FSL
13526
85
ENIGMA-DTI pipeline
13145
86
dcm2nii
13144
87
SVNTest
12930
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12848
89
libminc - Medical Image NetCDF library
12816
90
Artifact Detection Tools (ART)
12760
91
MARS (Multi-Atlas Robust Segmentation)
11827
92
BrainVISA
11733
93
Graph Theory GLM (GTG) MATLAB Toolbox
11583
94
NIfTI
11524
95
Task Independent Fluctuations Discussion
11487
96
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11435
97
Diffusional Kurtosis Estimator
11265
98
SPM for fNIRS toolbox
11146
99
2008 MICCAI MS Lesion Segmentation Challenge
11104
100
NODDI Matlab Toolbox
10924