Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.66%
  21000 Functional Connectomes Project97.05%
  3ITK-SNAP95.75%
  4BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6rapidtide92.34%
  7MRIcroGL91.95%
  8Rosetta Bit90.88%
  9DTI-TK90.80%
  10Functional Mixed Processes Models89.05%
  11Multi-Modal MRI Reproducibility Resource88.50%
  12PANDA: a pipeline tool for diffusion MRI88.45%
  13MPScope88.22%
  14TOADS-CRUISE Brain Segmentation Tools86.89%
  15BrainNet Viewer86.26%
  16Hadoop for data colocation85.39%
  17JIST: Java Image Science Toolkit85.08%
  18CONN : functional connectivity toolbox84.72%
  19Kurtosis Imaging Network - KIN84.52%
  20BRAINSTestData84.43%
  21ITools Resourceome84.16%
  22Functional Imaging BIRN84.06%
  23Local Label Learning (LLL) Segmentation83.13%
  24CutNII - Custom-angle slicer for brain atlas volumes83.04%
  25HD Neuro-Informatics83.02%
  26Infant Macaque MRI And DTI Templates82.26%
  27Lumina LP- 400 Response System82.21%
  28Philips Users Community82.17%
  29Statistical Methods for Heterogeneous Neuroimaging Data81.82%
  30HERMES81.06%
  31NUTMEG80.78%
  32ODIN80.52%
  33NeuroDebian80.43%
  34Stochastic Tractography System80.43%
  35Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  36fMRIstat79.79%
  37Bayesian longitudinal low-rank regression79.68%
  38map3d79.67%
  39Turbo-BrainVoyager79.64%
  40Vaa3D and Vaa3D-Neuron79.50%
  41DSI Studio79.20%
  42EPILEPSY DATA79.14%
  43MRTool79.06%
  44University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software79.00%
  45Solar Eclipse Imaging Genetics tools78.96%
  463T DWI test-retest reliability dataset78.93%
  47Seg3D78.68%
  48Ogles - OpenGL/OIV Stereotactic Tool78.64%
  49UNC/Utah NAMIC DTI Fiber Analysis Framework78.64%
  50Umeå Brain Arteries78.64%
  51iView X MRI-LR - Eye Tracking for fMRI78.64%
  52L-Neuron78.49%
  53WFU_PickAtlas78.48%
  54XCEDE Schema78.35%
  55MITK Diffusion78.22%
  56BioSig78.08%
  57Curry 777.81%
  58GazeReader77.81%
  59Functional ROI Atlas77.78%
  60BluePyOpt77.70%
  61SurfStat77.60%
  62CBRAIN77.49%
  63GPU based affine registration77.46%
  64MASIMatlab77.42%
  65FieldTrip77.34%
  66Biomag Discussion Group on Yahoo77.32%
  67XNBC77.14%
  68EEGLAB77.13%
  69GIFTI77.05%
  70Brede Toolbox77.01%
  71EEG Toolbox76.93%
  72HCP Harvard/MGH-UCLA76.85%
  73EEProbe76.84%
  74epi-example-dicom76.63%
  75E-Prime Extensions for fMRI76.62%
  76ATPP: Automatic Tractography-based Parcellation Pipeline76.56%
  77National Database for Autism Research76.52%
  78TurtleSeg76.48%
  79MindSeer76.42%
  80COINS76.26%
  81EONS76.25%
  82Insight Toolkit76.17%
  83Spatial Analysis 3D76.15%
  84ASA - Advanced Source Analysis76.11%
  85NIPY Diffusion Imaging Analysis76.10%
  86Brain Products' EEG/fMRI Hardware76.05%
  87PING75.85%
  88Cytoseg75.83%
  89HCP WU-Minn Consortium75.77%
  90In vivo MEMRI-based Rat Brain Atlas75.71%
  91NICE-SIGN75.68%
  92MNI Macaque Atlases75.65%
  93GesTr75.60%
  94cmrep75.59%
  95ParaView75.52%
  96PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  97Framework for Open Programmatic Access75.38%
  98LIBEEP75.38%
  99NIPY File IO75.18%
  100Micro-Manager75.17%
  101A robust method for correcting partial volume effect in ASL data75.12%
  102NFT: Neuroelectromag Forward Modeling75.04%
  103Brainsight74.90%
  104Faceted Search Based Ontology Visualizer74.89%
  105INCF Neuroimaging Data Sharing74.89%
  106Net Station74.81%
  107UCLA Multimodal Connectivity Database74.77%
  108FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  109brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  110EEGVIS74.66%
  111ProbabilisticBiasCorrection74.60%
  112I/OWA 374.57%
  113dtiBrainScope74.54%
  114DICOM_UploadGUI74.52%
  115Connectome File Format (CFF)74.48%
  116APERTURE74.44%
  117mask_explorer74.44%
  118Bisque74.41%
  119BrainLiner.jp74.34%
  120Advanced Normalization Tools74.32%
  121nitime74.27%
  122INVIZIAN74.26%
  123Anatomist74.21%
  124NordicNeuroLab74.14%
  125XCEDE Schema74.09%
  126Presentation74.05%
  127connectir74.03%
  128NC-IGT Fast Imaging Library74.00%
  129Age Related Atrophy Dataset74.00%
  130ERPLAB73.92%
  131MINC - Medical Image NetCDF73.92%
  132VIEWPixx73.91%
  133CANDI Share: Schizophrenia Bulletin 200873.91%
  134Triangle BioSystems73.89%
  135BrainMaps.org73.86%
  136Pydicom73.82%
  137The fMRI Data Center73.82%
  138PySurfer73.76%
  139XNAT Extras73.71%
  140Surf Ice73.65%
  141Statistics Online Computational Resource73.45%
  142Neuroimaging Made Easy Blog73.43%
  143TARQUIN MRS analysis package73.40%
  144NIRx NIRS Neuroimaging73.39%
  145PyNIfTI73.36%
  146COGNISION (TM) System73.25%
  147fMRI-CPCA73.23%
  148OpenElectrophy73.22%
  149NIPY Community73.20%
  150NITRC Community73.17%
  151Augmented Reality Mirror73.06%
  152NeuroScope72.95%
  153ASL data processing tool box72.94%
  154MagPro Magnetic Stimulator (TMS)72.94%
  155Generalized PPI Toolbox72.89%
  156Lipsia72.87%
  157MedINRIA72.87%
  158Mouse Connectome Project (MCP)72.79%
  159Fiber Tracking Tool72.78%
  160Fiber-tracking based on Finsler distance72.78%
  161ENIGMA-DTI pipeline72.75%
  162SumsDB Database72.73%
  163Fiber Optic Button Response System72.72%
  164CUDA accelerated spherical model M/EEG72.66%
  165False Discovery Rate Weighted72.64%
  166DATAPixx72.63%
  167OpenFMRI72.62%
  168DONE: Detection of Outlier NEurons72.55%
  169ArtRepair for robust fMRI72.45%
  170WhiteText - annotated neuroscience text72.44%
  171NIPY Structural and Functional Analysis72.36%
  172CLEAVE: Large Data Set ANOVA72.21%
  173scikit-learn72.17%
  174Mag Design and Engineering72.10%
  175Working Memory Trainer72.06%
  176PPMI72.00%
  177SFMProject71.92%
  178The Grid Code Analysis Toolbox - GridCAT71.90%
  179vuTools71.88%
  180Hitachi Optical Topography System71.88%
  181BRAINSConstellationDetector71.85%
  182MRI Digital Projection System71.59%
  183ShapeViewer71.52%
  184Normative Independent Component Analysis71.48%
  185LDDMM71.43%
  186fNIR Devices71.38%
  187OpenMEEG71.38%
  188Computational Morphometry Toolkit (CMTK)71.35%
  189Network-Based Statistic (NBS)71.28%
  190Data Format Tools71.28%
  191TORTOISE71.25%
  192NeuroElf71.23%
  193dcm2nii71.21%
  194ADNI71.16%
  1954D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  196GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity71.07%
  197COST71.02%
  198NeuroSynth70.83%
  199Viking Viewer for Connectomics70.74%
  200SR Research EyeLink Eye Trackers70.67%
  201LONI Provenance Editor70.63%
  202CoCoMac Brain Connectivity Database70.62%
  203MazeSuite70.54%
  204BrainBrowser70.49%
  205BioImage Suite70.43%
  206Pipeline Neuroimaging VirtualEnvironment70.41%
  207Biomedical Informatics Research Network70.34%
  208Disease State Prediction70.12%
  209Open Connectome Project70.04%
  210REST: a toolkit for resting-state fMRI69.97%
  211OEI fMRI compatible olfactometer69.96%
  212NCANDA: Data Integration Component69.90%
  213Source Information Flow Toolbox69.90%
  214Journals69.76%
  215Fast Fourier Transform (FFT) JavaLibrary69.75%
  216Laboratory of Neuro Imaging (LONI)69.74%
  217IMOD - 3D Reconstruction and Analysis69.72%
  218Nilearn69.61%
  219Mouse BIRN69.44%
  220BrainGraph Editor 1.0 Beta69.44%
  221BrainVisa Morphologist extensions69.43%
  222BrainVISA69.29%
  223LIMO EEG69.17%
  224Center for Computational Biology (CCB)69.15%
  225FADTTSter68.99%
  226Synchronized Histological Image View Arc68.86%
  227cbiNifti: Matlab/Octave Nifti library68.82%
  228Analyze68.78%
  229BrainMap Database68.76%
  230DPARSF68.68%
  231Textpresso - literature search engine68.67%
  232NeuroshareLibrary68.65%
  233SMAC: Spatial Multi-category Angle-based Classifier68.62%
  234E-Prime 3.068.58%
  235PST MRI Simulator68.50%
  236UNC 0-1-2 Infant Atlases68.27%
  237PsychoPy68.14%
  238CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  239Grantees Meeting for NITRC68.08%
  240Create DWI Atlas67.98%
  241The Neuro Bureau67.90%
  242BrainMagix SPM Viewer67.70%
  243BioMesh3D67.70%
  244Multiscale Weighted Principal Component Regression67.66%
  245NeuroWeb - NeuroImaging Database67.63%
  246Waxholm Space Atlas of the C57BL/6J Mouse Brain67.62%
  247NeuriteTracer67.45%
  248MultiTracer version 267.40%
  249dinifti67.32%
  250Rodent Cortical Thickness Analysis67.26%
  251Low Resolution Brain Electromagnetic Tomography67.25%
  252N2A67.19%
  253CBICA: PORTR67.17%
  254Brede Wiki67.00%
  255Homer266.96%
  256SCIRun66.94%
  257Rockland Download Link Script66.78%
  258MEGSIM66.69%
  259Mango66.50%
  260NIPY Pipeline and Interfaces66.47%
  261CAMINO-TRACKVIS66.47%
  262HDBIG66.40%
  263BrainMask Volume Processing Tool66.34%
  264ImageVis3D66.18%
  2653D Slicer66.10%
  266CBICA: ODVBA66.06%
  267fMRI Results Comparison Library65.75%
  268Spatially Constrained Parcellation65.74%
  269Books65.58%
  270Group Level Imputation of Statistic Maps65.49%
  271Connectome Viewer65.38%
  272SCRalyze65.38%
  273ShapeTools65.31%
  274HFH_DTI_DATA65.30%
  275Signed Differential Mapping65.29%
  276MRBrainS Evaluation Framework / Challenge65.15%
  277PICASSO skull stripping tool65.14%
  278ExPosition Packages65.09%
  279MRI_CVPR65.08%
  280NIREP64.96%
  281IIT Human Brain Atlas (v.4.1)64.79%
  282MARS (Multi-Atlas Robust Segmentation)64.68%
  283Parkinson's Disease Discovery Database64.60%
  284Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  285Diffusion Warp64.08%
  286UNC-Wisconsin Neurodevelopment Rhesus MRI Database63.93%
  287Non-rigid groupwise registration method63.75%
  288Web Interfaces for Multiscale Images63.57%
  289MarsBaR region of interest toolbox63.54%
  290Hammer And WML Modules for 3D Slicer63.42%
  291Diffusion Toolkit / TrackVis63.41%
  292Temporal-lobe.com63.32%
  293NeoSegPipeline63.20%
  294Brain Entropy in space and time (BEst)63.14%
  295FSL extensions63.14%
  296POS2SPM63.12%
  297Medical Image Visualization and Analysis63.06%
  298AFNI63.05%
  299CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)63.03%
  300MRtrix62.92%
  301Talairach Daemon62.81%
  302Neuroimaging Data Access Group62.68%
  303The Cognitive Atlas62.43%
  304Waxholm Space Atlas of the Sprague Dawley Rat Brain62.43%
  305fNIRS Data Analysis Environment62.26%
  306Tractography based on Riemannian geodesics and tensor adjugates62.21%
  307NeuroImaging Analysis Kit (NIAK)62.16%
  308Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration61.88%
  309Mindboggle-101 manually labeled brains61.81%
  310Monte Carlo Simulation Software: tMCimg61.67%
  311Neural ElectroMagnetic Ontologies61.65%
  312PubBrain Database61.64%
  313MoTrak - Head Motion Tracking System61.63%
  314SPM for fNIRS toolbox61.48%
  315CIGAL61.11%
  316CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)61.10%
  317Automatic Registration Toolbox60.96%
  318Mesh-based Monte Carlo (MMC)60.92%
  319MRI denoising60.63%
  320BrainVoyager60.44%
  321Neuroinformatics - The Journal60.36%
  322Zebrafish heart segmentation60.21%
  323Human Imaging Database (HID)60.19%
  324Monte Carlo eXtreme (MCX)60.16%
  325SPHARM-PDM Toolbox60.14%
  326IATR60.11%
  327GRETNA59.95%
  328IBSR59.71%
  329Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  330Neoseg59.61%
  331MONSTR Multi Contrast Brain Stripping59.48%
  332iso2mesh59.41%
  333Functional Connectivity Community59.20%
  334BRAINSSurfaceStats59.18%
  335Progression Score Model Toolkit59.14%
  336TAPIR58.98%
  337Statistical Methods for Manifold-valued Data58.97%
  338NIRAL Utilities58.71%
  339Anima58.45%
  340Scalable Brain Atlas58.15%
  341FSL58.01%
  342Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  343pyxnat57.94%
  344Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  345BRAINSTracer57.82%
  3463DSlicerLupusLesionModule57.47%
  347BRAINSCortex57.21%
  348BiofilmQuant57.09%
  3492008 MICCAI MS Lesion Segmentation Challenge57.04%
  350SLIC: a whole brain parcellation toolbox55.72%
  351VectorValuedHistogramNormalizer55.65%
  352BraTumIA (Brain Tumor Image Analysis)55.62%
  353AutoTract55.51%
  354Spinal Cord Toolbox55.13%
  355Center for Functional Neuroimaging Tech55.03%
  356International Imaging Genetics Conference54.88%
  357NITRC Enhanced Services54.77%
  358ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis54.71%
  359Subject Order-Independent Group ICA54.68%
  360Group ICA Toolbox (GIFT and EEGIFT)54.50%
  361Draw3D and Meshinator54.46%
  362DTIProcess ToolKit54.23%
  363TumorSim53.86%
  364VMTK in 3D Slicer53.66%
  365NIfTI53.63%
  366MCIC- schizophrenic and matched control data53.00%
  367BrainVoyager Brain Tutor52.93%
  3683d Brain Atlas Reconstructor52.90%
  369Mid-Space-Independent Deformable Image Registration52.45%
  370Licensing52.38%
  371VANDPIRE52.38%
  372C-PAC52.38%
  373ANTsR52.31%
  374STAMP Atlases for Brain Abnormality Detection52.19%
  375Artifact Detection Tools (ART)52.15%
  376Generation R Pediatric MRI Resources52.13%
  377SpineSegmentation module for 3DSlicer51.99%
  378EEG human categorization data51.96%
  379LONI Pipeline Environment51.91%
  380MRI Defacer51.54%
  381Parallel Stochastic Ion Channel Simulator51.43%
  382BRAINSMush50.66%
  383Diffusional Kurtosis Estimator50.56%
  384CANDI Neuroimaging Access Point50.53%
  385factory_t1_dti50.47%
  386CBS High-Res Brain Processing Tools50.44%
  387Lightweight Data Pipeline50.41%
  388Pipeline system for Octave and Matlab50.38%
  389INSTAR (Infant Joint Segmentation and Registration)50.31%
  390ABSORB for groupwise registration50.24%
  391shapeAnalysisMANCOVA - SPHARM tools49.87%
  392NYU CSC TestRetest49.87%
  393Ultra-high field atlas for DBS planning49.52%
  394ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  395ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  396Maps4Mipav (Exploratory JIST) 49.32%
  397Single-subject Resting state fMRI Reproducibility Resource49.27%
  398Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations49.24%
  399MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  400Multiple Correlation Function Tool48.96%
  401Epsilon Radial Networks48.81%
  402Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  403GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  404SIVIC48.42%
  405Magnetic Resonance Angiography Atlas Dataset48.30%
  406Conferences, Workshops and Meetings48.24%
  407BXH/XCEDE Tools48.06%
  408Orientation Distribution Function in Constant Solid Angle (CSA-ODF)47.79%
  409ANIMA47.79%
  410Infant Functional Atlas47.68%
  411GenGen47.52%
  412SegEditing47.50%
  413BRAINSFit47.32%
  414fNIRS Research Database47.26%
  415FBIRN Image Processing Scripts (FIPS)47.22%
  416The Cancer Imaging Archive (TCIA)47.14%
  417Task Independent Fluctuations Discussion47.11%
  418NODDI Matlab Toolbox47.00%
  419Simple Medical Imaging Library Interface (SMILI)46.66%
  420SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation46.64%
  421MRI Dataset for Hippocampus Segmentation46.59%
  422Local Manifold Learning for Multi-atlas segmentation46.38%
  423BetA-Series COrrelation46.22%
  424Gibbsconnectome46.20%
  425Graph Theory GLM (GTG) MATLAB Toolbox46.04%
  426FreeSurfer45.65%
  427BrainSuite45.63%
  428Diffusion MRI @ DKFZ Heidelberg45.52%
  429Wisconsin White Matter Hyperintensities Segmentation Toolbox45.44%
  430PESTICA & SLOMOCO: physio and motion correction tools45.43%
  431DWI/DTI Quality Control Tool: DTIPrep45.42%
  432Vervet Probabilistic Atlas44.95%
  433Best Practices for Software Development44.91%
  434Optseq - fMRI Event Scheduler44.87%
  435Spanish Resting State Network44.84%
  436S-rep Fitting, Statistics, and Segmentation44.76%
  437NeuroImage Field-of-View Normalization Tool44.45%
  438Bayesian Connectivity Analysis software (BCA)44.44%
  439Imeka Tractography Service44.35%
  440MATLAB Tutorial on Diffusion Tensor MRI44.28%
  441AHEAD44.13%
  442Phoneme-Syllable Tsinghua University CS&T 201143.96%
  443EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  444In vivo MEMRI-based Mouse Brain Atlas43.68%
  445Robust Brain Extraction (ROBEX)43.68%
  446Preprocessed Connectomes Project43.46%
  447QCQP43.44%
  448Human Connectome Project (HCP)43.41%
  449Multicomponent T2 estimation with stimulated echo correction43.38%
  450Brainnetome fMRI toolkit43.32%
  451SRI24 Atlas: Normal Adult Brain Anatomy43.29%
  452Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function43.23%
  453NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space43.19%
  454Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  455BRAINSROIAuto42.50%
  456MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data42.48%
  457Graphtools42.47%
  458Longitudinal MS Lesion Imaging Archive42.35%
  459FMRIpower42.29%
  460NIDB - Neuroinformatics Database42.27%
  461ABC (Atlas Based Classification)41.98%
  462Brainnetome DiffusionKit41.93%
  463ShapeComplexityIndex41.87%
  464GIMME (Group Iterative Multiple Model Estimation)41.79%
  465Brain Connectivity Toolbox41.71%
  466YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  467Brainance DTI Module41.33%
  468HAMMER: Deformable Registration41.26%
  469Cluster reporter41.03%
  470Atlasing of the basal ganglia40.95%
  471Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  472Neurolucida40.86%
  473iBEAT40.53%
  474SPM40.45%
  475CBFBIRN40.45%
  476age-ility40.34%
  477REX40.16%
  478Stereo Investigator40.09%
  4797T Structural MRI scans ATAG40.00%
  480Emory-UNC Developmental Macaque Structural and DTI Atlases39.98%
  481Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)39.24%
  482XNAT39.22%
  483DTI Atlas Builder39.04%
  484Quantitative Diffusion Tools39.01%
  485isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab38.84%
  486ICA Components from Kessler, et al, JAMA Psychiatry 201638.83%
  487DTI-TEMPLATE-RHESUS-MACAQUES38.79%
  488Fast Nonlocal Means for MRI denoising38.68%
  489Functional Analysis of Diffusion Tensor38.56%
  490FiberViewerLight38.56%
  491GLIRT37.71%
  492VAMCA Cortical Meta-analysis Toolbox37.53%
  493LONI Debabeler37.41%
  494DICOMConvert37.27%
  495BrainCSI37.02%
  496DTI-Reg36.47%
  497DeID - A data sharing tool for neuroimaging studies36.44%
  498JIST Resources for Algorithm Development36.26%
  499Task-based fMRI atlases36.06%
  500HFH_DTI_TLE_TOOLS35.64%
  501MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis35.57%
  502JIP fMRI Analysis Toolkit35.50%
  503MriWatcher35.48%
  504AutoSeg35.34%
  505Stark Cross-Sectional Aging35.22%
  506AMILab35.01%
  507RapidArt34.88%
  508GTRACT34.29%
  509Computational Anatomy Toolbox - CAT34.11%
  510BrainSolution34.07%
  511MABMIS: Multi-Atlas Based Segmentation33.97%
  512SkullStrippingToolkit33.88%
  513cPPI Toolbox for fMRI33.81%
  514Deformable Template Model for Brain Analysis33.37%
  515masked ICA (mICA) Toolbox33.23%
  516PyMVPA33.13%
  517Brainscape33.01%
  518DRAMMS Deformable Image Registration Toolbox32.65%
  519CIFTI Connectivity File Format32.34%
  520DTI denoising32.30%
  521MRIcroS31.93%
  522Diffusion Tractography with Kalman Filter31.87%
  523peak_nii31.86%
  524Functional Connectivity Analysis Tool for near-infrared spectroscopy data31.81%
  525PHYCAA+: adaptive physiological noise correction for BOLD fMRI31.70%
  526ShapeWorks31.68%
  527Templates for In vivo Mouse Brain31.64%
  528Cerebellar White Matter Atlas31.53%
  529Slicer3 Example Modules31.50%
  530HistoloZee - 3D histology reconstruction and co-registration with MRI31.38%
  531CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.31.33%
  5323-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood31.29%
  533DicomBrowser31.24%
  534High-quality diffusion-weighted imaging of Parkinson's disease31.10%
  535GIMIAS30.79%
  536ADJUST - EEG Automatic Artifact Removal30.76%
  537HAMMER Suite30.31%
  538Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  539Image Synthesis30.08%
  540MRI Studio30.02%
  541BASH4RfMRI29.93%
  542Program for optimal design of blocked fMRI experiments29.83%
  543Paradigm29.81%
  544GAMBIT29.74%
  545MIPAV29.59%
  546NPTK29.57%
  547Manually Labeled MRI Brain Scan Database29.53%
  548DFBIdb29.33%
  549SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  550BRAINSDemonWarp29.19%
  551NIH Pediatric MRI Data Repository29.14%
  552ASHS: Automatic Segmentation of Hippocampal Subfields28.89%
  553fMRI Grocer28.81%
  554NIH-CIDI Lung Segmentation Tool28.72%
  555NITRC GForge Extensions28.70%
  556Numerical Fibre Generator (NFG)28.40%
  557Group Information Guided ICA28.29%
  558Multi-fiber Reconstruction from DW-MRI28.09%
  559Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)28.07%
  560UNC Human Brain Atlas28.03%
  561HI-SPEED Software Packets28.01%
  562R-package for adaptive DWI analysis27.95%
  563Corpus Callosum Thickness Profile Analysis Pipeline27.87%
  564Colin 3T/7T High-resolution Atlas27.85%
  565Hierarchical Functional Networks in Resting State fMRI27.84%
  566Clinical Toolbox for SPM27.64%
  567A label fusion using CRF27.43%
  568Template Image Processing Library27.30%
  569DW-MRI registration in FSL27.22%
  570SPHARM-MAT27.22%
  571Brainnetome Atlas Viewer27.15%
  572C8: Corpus Callosum Computations27.10%
  573ProCTSeg26.94%
  574ShapePopulationViewer26.92%
  575MisterI26.85%
  576Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)26.82%
  577DTI Fiber Tract Statistics26.69%
  578MR Connectome Automated Pipeline (MRCAP)26.52%
  5793DMeshMetric26.46%
  580eConnectome26.44%
  581Simulated Diffusion-Weighted Datasets26.39%
  582ARCTIC26.36%
  583minc-toolkit25.84%
  584MeshValmet: Validation Metric for Meshes25.84%
  585BrainVoyager Viewer25.76%
  586CleanLine25.73%
  587Robust Biological Parametric Mapping25.71%
  588BrainParser25.48%
  589Convert MNI coordinates to or from XYZ25.44%
  5903T MRI data set on structural brain-behavior correlations25.35%
  591Gradient Non-linearity Unwarping Tool25.22%
  592WFU_Pipeline25.17%
  593Standard Amygdalar fMRI Probe Tasks24.99%
  594MeshGen - Surface meshes from volumetric segmentation data24.91%
  595MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation24.84%
  596MASI Label Fusion24.79%
  597volBrain: online MRI segmentation24.62%
  598GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data24.54%
  599LORIS24.52%
  600MIView24.49%
  601Automatic Segmentation Tool Adapter24.20%
  602Finsler tractography module for Slicer24.11%
  603FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.01%
  604WFU_BPM23.96%
  605TetraMetrix23.96%
  606R-package for adaptive fMRI analysis23.59%
  607Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising23.57%
  608SnPM23.49%
  609MNE - Minimum Norm Current Estimates23.46%
  610B0 and eddy current correction for DTI23.28%
  611Functional Regression Analysis of DTI23.20%
  612Morphometry BIRN23.14%
  613aBEAT22.97%
  614Spatial Statistical Parametric Mapping22.97%
  615RFT_FDR22.92%
  616CCSeg - Corpus Callosum Segmentation22.83%
  617Elastic Net-based Parcellation (ENPA)22.61%
  618A joint sparse partial correlation method for estimating group functional networks22.57%
  619DOTS WM tract segmentation22.42%
  620OASIS22.31%
  621Web Game for Collaborative Labeling22.29%
  622Corpus callosum and brain segmentations from ABIDE database22.26%
  623Parallel Graph-theoretical Analysis Toolkit22.23%
  624JHU Proj. in Applied Medical Imaging22.20%
  625Camino22.06%
  626POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  627Inter-Group Registration Toolbox21.93%
  628Notion ResearchPACS21.92%
  629MOCA21.91%
  630Iterative dual-regression with sparse prior21.85%
  631xjView, a viewing tool for SPM21.81%
  632Estimating Functional Brain Network based on Modularity Prior21.77%
  633LONI Inspector21.77%
  634VoxBo21.48%
  635Slicer3 Module Rician noise filter21.38%
  636Brainstorm21.35%
  637PICSL Multi-Atlas Segmentation Tool21.30%
  638BTK : Baby Brain Toolkit21.27%
  6394D Atlas Construction21.22%
  640Mindboggle: automated brain labeling21.10%
  641Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation21.05%
  642Diffusion MRI - In-vivo and Phantom Data20.99%
  643NiiStat20.91%
  644SOCK20.87%
  645cortex20.64%
  646MGH Neonatal/Pediatric ADC atlases20.64%
  647freesurfR20.36%
  648AtlasConstructionToolkit20.36%
  649DentalTools20.18%
  650STAPLE20.03%
  651GAMMA19.88%
  652NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.85%
  653Efficient Permutation Testing19.77%
  654Generalized Covariance Analysis (gCVA)19.75%
  655AURA tools : AUtomated Retinal Analysis tools19.74%
  656imcalc: SPM batch image calulator19.30%
  657Displacement Field Viewer19.22%
  658UManitoba-JHU Functionally-Defined Human White Matter Atlas19.18%
  659Fusion ICA Toolbox (FIT)19.13%
  660NIRx2nirs: A NIRx to .nirs data converter19.12%
  661INIA19 Primate Brain Atlas19.11%
  662ALVIN - Lateral Ventricle Segmentation18.88%
  663Single-index Varying Coefficient Model for Functional Responses18.87%
  664DW-MRI Random Walk Simulator18.86%
  665BrainNetworkConstructionAnalysisPlatform18.83%
  666Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.80%
  667Randomized Denoising Autoencoders for Neuroimaging18.77%
  668Connectome Workbench18.70%
  669FIV18.64%
  670Landman NeuroImaging Tools18.44%
  671Hitachi2nirs18.35%
  672CMFreg18.26%
  673Penn Hippocampus Atlas18.24%
  674Resource Ontology Discussion Group18.22%
  675Diffusion MRI Tool18.01%
  676SINOMO (SIngular NOde MOtifs)17.91%
  677MouseBIRN Atlasing Toolkit (MBAT)17.55%
  678SPM_SS - fMRI functional localizers17.54%
  679Brain lesion segmentation tool using SVM17.43%
  680NVM17.42%
  681XFSL: An FSL toolbox17.28%
  682fMRI Classification in R16.98%
  683BCILAB16.95%
  684Automated Image Registration (AIR)16.78%
  685resting-state pediatric imaging template16.48%
  686MIAS Registration Toolkit16.33%
  687Brain Segmentation Testing Protocol16.12%
  688ValMap: simple statistical mapping tool16.02%
  689Wavelet-based Image Fusion15.94%
  690Using Make for Neuroimaging Workflow: Manual and Examples15.83%
  691vis: SPM Visualized Statistics toolbox15.77%
  692CoCoMac-Paxinos3D viewer15.74%
  693Jim15.72%
  694Segmentation Validation Engine15.51%
  695NIRS-SPM15.49%
  696Serotonin Transporter HighResolution PET Template15.39%
  697TractoR: Tractography with R15.35%
  698MGDM: Multi Geometric Deformable Model15.32%
  699IDeA Lab brain image processing suite15.28%
  700NeuroLens15.20%
  701DICCCOL predictor (v0.1)15.18%
  702Internet Brain Volume Database (IBVD)15.18%
  703DIAMOND15.11%
  704The Brain Coactivation Map14.79%
  705VarTbx – Variability Toolbox14.54%
  706CamBA14.54%
  707MRI Neuroanatomy Labeling Services14.50%
  708Brainwaver14.47%
  709Subject Library14.45%
  710Measure Projection Toolbox (MPT)14.34%
  711Level-set Segmentation for Slicer314.13%
  712LONI De-identification Debablet14.07%
  713Cluster Extent Correction13.99%
  714Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI13.72%
  715NeuroPub Visualizer13.60%
  716Kymata Atlas13.58%
  717BrainDecoderToolbox13.51%
  718Microstructural correlation toolbox13.49%
  719BrainFX13.48%
  720Wisconsin Cortical Thickness Analysis (CTA) Toolbox13.48%
  721Pythagorean Displacement and Motion Regressors13.36%
  722CBICA: COMPARE13.34%
  723mach2qtl13.23%
  724mach2dat13.14%
  725BrainVision Analyzer12.90%
  726N3 - MINC B0 nonuniformity correction12.85%
  727gCCA12.58%
  728fanDTasia Java Applet: DT-MRI Processing12.50%
  729SVV12.48%
  730Brainvox12.36%
  731MouseTracker12.28%
  732M312.26%
  733MEG Tools11.85%
  734UNC Primate Brain Atlas11.18%
  735INCF11.07%
  736Caret11.02%
  737MaCH10.86%
  738CDF-HC PointSetReg10.23%
  739ShapeComplexAtlas10.08%
  740Rodent Brain Extraction Tool9.924%
  741MaCH-Admix9.897%
  742Distributome9.215%