Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1105993
2
MRIcron
1017471
3
BIDScoin
925015
4
ITK-SNAP
478039
5
FCP/INDI PRIVATE SITE
398147
6
IIT Human Brain Atlas (v.5.0)
239481
7
CONN : functional connectivity toolbox
224270
8
MRIcroGL
212764
9
fMRI-CPCA
210009
10
1000 Functional Connectomes Project
185612
11
BrainNet Viewer
130998
12
BXH/XCEDE Tools
111472
13
NIDB - Neuroinformatics Database
102186
14
DTI-TK
99438
15
age-ility
90405
16
IBSR
84508
17
BioImage Suite
84109
18
Solar Eclipse Imaging Genetics tools
80049
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
78985
20
Multi-Modal MRI Reproducibility Resource
78959
21
JIST: Java Image Science Toolkit
75841
22
BrainFlow
74206
23
WFU_PickAtlas
67296
24
GIFTI
60314
25
NITRC Computational Environment (NITRC-CE)
57719
26
PANDA: a pipeline tool for diffusion MRI
55949
27
The Neuro Bureau
52857
28
3T DWI test-retest reliability dataset
50846
29
Functional Imaging BIRN
50138
30
Multimodal Visual Consciousness Study Dataset
46941
31
TOADS-CRUISE Brain Segmentation Tools
44730
32
Generalized PPI Toolbox
44055
33
fNIRS Data Analysis Environment
43223
34
QuickNII - Serial section aligner to volumetric atlases
42204
35
Standard Amygdalar fMRI Probe Tasks
40542
36
EEGLAB
40104
37
Network-Based Statistic (NBS)
38920
38
BrainMap Database
38814
39
MIITRA atlas
38028
40
FreeSurfer
37997
41
NeuroImaging Analysis Kit (NIAK)
35881
42
UNC 0-1-2 Infant Atlases
34750
43
Brain Biomechanics Imaging Resources
34337
44
Graph Theory GLM (GTG) MATLAB Toolbox
32215
45
DWI/DTI Quality Control Tool: DTIPrep
31977
46
Homer2
31322
47
TumorSim
30673
48
CBS High-Res Brain Processing Tools
29317
49
Melbourne Subcortex Atlas
28943
50
NYU CSC TestRetest
28456
51
NeuroDebian
28393
52
BrainVisa Morphologist extensions
27865
53
Anima
27656
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
27262
55
XNAT Extras
26449
56
4D UNC Neonatal and Infant Cortical Surface Atlases
26192
57
SPHARM-PDM Toolbox
24306
58
Neuroimaging Made Easy Blog
23560
59
SRI24 Atlas: Normal Adult Brain Anatomy
22537
60
BrainMask Volume Processing Tool
22219
61
CANDI Neuroimaging Access Point
21804
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
21697
63
Data Format Tools
20569
64
Fast Nonlocal Means for MRI denoising
20535
65
Vaa3D and Vaa3D-Neuron
20311
66
3DSlicerLupusLesionModule
20220
67
ShapePopulationViewer
19721
68
Mango
19687
69
Surf Ice
19557
70
MRtrix
19361
71
Group ICA Toolbox (GIFT and EEGIFT)
19211
72
ANDA
19115
73
Automatic Registration Toolbox
19100
74
Awake Rat rsfMRI Database
18669
75
MITK Diffusion
18488
76
Hammer And WML Modules for 3D Slicer
18122
77
Subject Order-Independent Group ICA
17896
78
GRETNA
17896
79
Talairach Daemon
17678
80
AutoSeg
17647
81
DCP：Diffusion Connectome Pipeline
17340
82
Human Imaging Database (HID)
17310
83
Diffusion Toolkit / TrackVis
17122
84
Freesurfer fsaverage
17037
85
ENIGMA-DTI pipeline
16927
86
Spatially Constrained Parcellation
16854
87
BrainSuite
16847
88
Computational Morphometry Toolkit (CMTK)
16743
89
Multi-site Frequency Drift MR Spectroscopy
16619
90
NeuroDOT
16405
91
3D Slicer
16347
92
MARS (Multi-Atlas Robust Segmentation)
15552
93
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15426
94
ReproNim: A Center for Reproducible Neuroimaging Computation
14894
95
FSL
14805
96
Maps4Mipav (Exploratory JIST)
14252
97
3DMeshMetric
14087
98
Artifact Detection Tools (ART)
14059
99
ABSORB for groupwise registration
13879
100
Brainstorm
13849