Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.71%
  21000 Functional Connectomes Project97.07%
  3ITK-SNAP95.83%
  4BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6CBICA: CLASSIC93.29%
  7MPI-Leipzig Mind-Brain-Body Dataset92.68%
  8MRIcroGL92.49%
  9rapidtide92.34%
  10Rosetta Bit90.88%
  11DTI-TK90.59%
  12Functional Mixed Processes Models89.05%
  13Multi-Modal MRI Reproducibility Resource88.44%
  14PANDA: a pipeline tool for diffusion MRI88.43%
  15MPScope88.22%
  16BrainNet Viewer86.84%
  17TOADS-CRUISE Brain Segmentation Tools86.30%
  18CONN : functional connectivity toolbox85.53%
  19Cavernous Hemangioma: Epilepsy & ADD84.87%
  20JIST: Java Image Science Toolkit84.78%
  21CBICA: PREDICT84.68%
  22Kurtosis Imaging Network - KIN84.52%
  23CBICA: Brain Tumor Modeling - Coupled Solver84.40%
  24ITools Resourceome84.16%
  25Hadoop for data colocation84.04%
  26CBICA: Brain Anatomy Simulator83.98%
  27Functional Imaging BIRN83.95%
  28Local Label Learning (LLL) Segmentation83.13%
  29HD Neuro-Informatics83.02%
  30Infant Macaque MRI And DTI Templates82.26%
  31Lumina LP- 400 Response System82.21%
  32Philips Users Community82.17%
  33nonfractal81.65%
  34HERMES81.06%
  35NUTMEG80.78%
  36NeuroDebian80.61%
  37ODIN80.52%
  38Vaa3D and Vaa3D-Neuron80.45%
  39Stochastic Tractography System80.43%
  40Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  41Solar Eclipse Imaging Genetics tools79.81%
  42fMRIstat79.79%
  43Bayesian longitudinal low-rank regression79.68%
  44map3d79.67%
  45Turbo-BrainVoyager79.64%
  463T DWI test-retest reliability dataset79.27%
  47DSI Studio79.09%
  48WFU_PickAtlas78.87%
  49MITK Diffusion78.75%
  50Seg3D78.68%
  51Ogles - OpenGL/OIV Stereotactic Tool78.64%
  52Umeå Brain Arteries78.64%
  53iView X MRI-LR - Eye Tracking for fMRI78.64%
  54MASIMatlab78.51%
  55L-Neuron78.49%
  56XCEDE Schema78.35%
  57BioSig78.08%
  58Framewise Integrated Real-time MRI Monitoring77.89%
  59Curry 777.81%
  60GazeReader77.81%
  61Functional ROI Atlas77.78%
  62BluePyOpt77.70%
  63SurfStat77.60%
  64CBRAIN77.49%
  65GPU based affine registration77.46%
  66GIFTI77.36%
  67FieldTrip77.34%
  68Biomag Discussion Group on Yahoo77.32%
  69VALiDATe29 squirrel monkey brain atlas77.21%
  70XNBC77.14%
  71Brede Toolbox77.01%
  72EEG Toolbox76.93%
  73HCP Harvard/MGH-UCLA76.85%
  74EEProbe76.84%
  75epi-example-dicom76.63%
  76E-Prime Extensions for fMRI76.62%
  77National Database for Autism Research76.52%
  78TurtleSeg76.48%
  79MindSeer76.42%
  80COINS76.26%
  81EONS76.25%
  82Insight Toolkit76.17%
  83Spatial Analysis 3D76.15%
  84ASA - Advanced Source Analysis76.11%
  85NIPY Diffusion Imaging Analysis76.10%
  86Brain Products' EEG/fMRI Hardware76.05%
  87Cytoseg75.83%
  88HCP WU-Minn Consortium75.77%
  89In vivo MEMRI-based Rat Brain Atlas75.71%
  90NICE-SIGN75.68%
  91MNI Macaque Atlases75.65%
  92GesTr75.60%
  93cmrep75.59%
  94ParaView75.52%
  95PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  96Framework for Open Programmatic Access75.38%
  97LIBEEP75.38%
  98NIPY File IO75.18%
  99Micro-Manager75.17%
  100CBICA: PORTR75.13%
  101A robust method for correcting partial volume effect in ASL data75.12%
  102NFT: Neuroelectromag Forward Modeling75.04%
  103CBICA: ODVBA74.97%
  104Brainsight74.90%
  105Faceted Search Based Ontology Visualizer74.89%
  106INCF Neuroimaging Data Sharing74.89%
  107Net Station74.81%
  108UCLA Multimodal Connectivity Database74.77%
  109FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  110brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  111EEGVIS74.66%
  112ProbabilisticBiasCorrection74.60%
  113I/OWA 374.57%
  114dcm2nii74.55%
  115dtiBrainScope74.54%
  116DICOM_UploadGUI74.52%
  117Connectome File Format (CFF)74.48%
  118APERTURE74.44%
  119mask_explorer74.44%
  120Bisque74.41%
  121BrainLiner.jp74.34%
  122Advanced Normalization Tools74.32%
  123nitime74.27%
  124INVIZIAN74.26%
  125Anatomist74.21%
  126NordicNeuroLab74.14%
  127XCEDE Schema74.09%
  128Generalized PPI Toolbox74.06%
  129Presentation74.05%
  130connectir74.03%
  131NC-IGT Fast Imaging Library74.00%
  132Age Related Atrophy Dataset74.00%
  133ERPLAB73.92%
  134VIEWPixx73.91%
  135CANDI Share: Schizophrenia Bulletin 200873.91%
  136Triangle BioSystems73.89%
  137BrainMaps.org73.86%
  138Pydicom73.82%
  139The fMRI Data Center73.82%
  140MINC - Medical Image NetCDF73.76%
  141PySurfer73.76%
  142XNAT Extras73.75%
  143NITRC Community73.58%
  144fMRI-CPCA73.52%
  145Surf Ice73.48%
  146Statistics Online Computational Resource73.45%
  147TARQUIN MRS analysis package73.40%
  148NIRx NIRS Neuroimaging73.39%
  149CBICA: Datasets73.38%
  150PyNIfTI73.36%
  151Neuroimaging Made Easy Blog73.32%
  152EEGLAB73.26%
  153COGNISION (TM) System73.25%
  154TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA73.24%
  155OpenElectrophy73.22%
  156NIPY Community73.20%
  157PVS_Enhance72.99%
  158NeuroScope72.95%
  159ASL data processing tool box72.94%
  160MagPro Magnetic Stimulator (TMS)72.94%
  161Lipsia72.87%
  162MedINRIA72.87%
  163Nilearn72.82%
  164Mouse Connectome Project (MCP)72.79%
  165Fiber Tracking Tool72.78%
  166Fiber-tracking based on Finsler distance72.78%
  167SumsDB Database72.73%
  168Celeritas: Fiber Optic Response System72.72%
  169CUDA accelerated spherical model M/EEG72.66%
  170False Discovery Rate Weighted72.64%
  171DATAPixx72.63%
  172OpenFMRI72.62%
  173DONE: Detection of Outlier NEurons72.55%
  174ArtRepair for robust fMRI72.45%
  175WhiteText - annotated neuroscience text72.44%
  176NIPY Structural and Functional Analysis72.36%
  177CLEAVE: Large Data Set ANOVA72.21%
  178scikit-learn72.17%
  179Network-Based Statistic (NBS)72.13%
  180Mag Design and Engineering72.10%
  181Working Memory Trainer72.06%
  182PPMI72.00%
  183SFMProject71.92%
  184vuTools71.88%
  185Hitachi Optical Topography System71.88%
  186BRAINSConstellationDetector71.85%
  187Mayo Clinic Adult Lifespan Template and Atlases71.63%
  188Computational Morphometry Toolkit (CMTK)71.60%
  189Hyperion: MRI Digital Projection System71.59%
  190ShapeViewer71.52%
  191Normative Independent Component Analysis71.48%
  192LDDMM71.43%
  193fNIR Devices71.38%
  194OpenMEEG71.38%
  195BioImage Suite71.26%
  196TORTOISE71.25%
  197NeuroElf71.23%
  198ADNI71.16%
  1994D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  200Data Format Tools71.07%
  201COST71.02%
  202ENIGMA-DTI pipeline70.91%
  203GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity70.86%
  204NeuroSynth70.83%
  205Viking Viewer for Connectomics70.74%
  206SR Research EyeLink Eye Trackers70.67%
  207LONI Provenance Editor70.63%
  208CoCoMac Brain Connectivity Database70.62%
  209MazeSuite70.54%
  210BrainBrowser70.49%
  211Pipeline Neuroimaging VirtualEnvironment70.41%
  212Biomedical Informatics Research Network70.34%
  213Waxholm Space Atlas of the Sprague Dawley Rat Brain70.10%
  214BrainVisa Morphologist extensions70.04%
  215Open Connectome Project70.04%
  216Source Information Flow Toolbox69.99%
  217REST: a toolkit for resting-state fMRI69.97%
  218OEI fMRI compatible olfactometer69.96%
  219Journals69.76%
  220Fast Fourier Transform (FFT) JavaLibrary69.75%
  221Laboratory of Neuro Imaging (LONI)69.74%
  222IMOD - 3D Reconstruction and Analysis69.72%
  223Mouse BIRN69.44%
  224BrainGraph Editor 1.0 Beta69.44%
  225LIMO EEG69.17%
  226Center for Computational Biology (CCB)69.15%
  227FADTTSter68.99%
  228Prospective Acquisition CorrEction (PACE) Resting State EPI data68.90%
  229UNC 0-1-2 Infant Atlases68.88%
  230Synchronized Histological Image View Arc68.86%
  231cbiNifti: Matlab/Octave Nifti library68.82%
  232Analyze68.78%
  233DPARSF68.68%
  234Textpresso - literature search engine68.67%
  235BrainMap Database68.65%
  236NeuroshareLibrary68.65%
  237SMAC: Spatial Multi-category Angle-based Classifier68.62%
  238E-Prime68.58%
  239The Neuro Bureau68.54%
  240MRI Simulator68.50%
  241Homer268.48%
  242BrainVISA68.45%
  243PsychoPy68.14%
  244CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  245Grantees Meeting for NITRC68.08%
  246Create DWI Atlas67.98%
  247UNC/Utah NAMIC DTI Fiber Analysis Framework67.77%
  248BrainMagix SPM Viewer67.70%
  249BioMesh3D67.70%
  250Multiscale Weighted Principal Component Regression67.66%
  251NeuroWeb - NeuroImaging Database67.63%
  252NeuriteTracer67.45%
  253MultiTracer version 267.40%
  254dinifti67.32%
  255Low Resolution Brain Electromagnetic Tomography67.25%
  256N2A67.19%
  257S3DL Sparse Dictionary Learning based MR Image and Lesion Segmentation67.00%
  258Brede Wiki67.00%
  259Augmented Reality Mirror66.97%
  260SCIRun66.94%
  261NCANDA: Data Integration Component66.78%
  262Rockland Download Link Script66.78%
  263MEGSIM66.69%
  264Mango66.66%
  265UNC-Wisconsin Neurodevelopment Rhesus MRI Database66.64%
  266NIPY Pipeline and Interfaces66.47%
  267CAMINO-TRACKVIS66.47%
  268Spatially Constrained Parcellation66.42%
  2693D Slicer66.42%
  270HDBIG66.40%
  271Signed Differential Mapping66.31%
  272IIT Human Brain Atlas (v.4.1)66.30%
  273ImageVis3D66.18%
  274BrainMask Volume Processing Tool65.93%
  275HFH_DTI_DATA65.62%
  276Books65.58%
  277Group Level Imputation of Statistic Maps65.49%
  278Connectome Viewer65.38%
  279SCRalyze65.38%
  280ShapeTools65.31%
  281MRBrainS Evaluation Framework / Challenge65.15%
  282ExPosition Packages65.09%
  283MRI_CVPR65.08%
  284NIREP64.96%
  285Parkinson's Disease Discovery Database64.60%
  286PhysIO Toolbox64.57%
  287Longitudinal neuroimaging hippocampal markers for diagnosing Alzheimer's disease64.48%
  288PICASSO skull stripping tool64.35%
  289MARS (Multi-Atlas Robust Segmentation)64.33%
  290fNIRS Data Analysis Environment64.32%
  291Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  292Diffusion Warp64.08%
  293CBICA: Multi Atlas Skull Stripping (MASS)64.06%
  294A 3T probabilistic Locus Coeruleus atlas64.02%
  295Non-rigid groupwise registration method63.75%
  296Diffusion Toolkit / TrackVis63.65%
  297Web Interfaces for Multiscale Images63.57%
  298MarsBaR region of interest toolbox63.54%
  299Temporal-lobe.com63.32%
  300Hammer And WML Modules for 3D Slicer63.23%
  301NeoSegPipeline63.20%
  302Brain Entropy in space and time (BEst)63.14%
  303FSL extensions63.14%
  304Medical Image Visualization and Analysis63.06%
  305AFNI63.05%
  306SPM for fNIRS toolbox62.94%
  307Neuroimaging Data Access Group62.68%
  308Anima62.51%
  309The Cognitive Atlas62.43%
  310CBICA: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters (MUSE)62.31%
  311Tractography based on Riemannian geodesics and tensor adjugates62.21%
  312Talairach Daemon62.01%
  313Mindboggle-101 manually labeled brains61.81%
  314NeuroImaging Analysis Kit (NIAK)61.76%
  315Monte Carlo Simulation Software: tMCimg61.67%
  316Neural ElectroMagnetic Ontologies61.65%
  317PubBrain Database61.64%
  318MoTrak: Head Motion Tracking System61.63%
  319MRtrix61.50%
  320Rodent Cortical Thickness Analysis61.39%
  321CBICA: PHI Estimator61.34%
  322GRETNA61.14%
  323CIGAL61.11%
  324IBSR60.94%
  325Mesh-based Monte Carlo (MMC)60.92%
  326DTI Connectome Pipeline60.84%
  327MRI denoising60.63%
  328The UNC EBDS neonatal DTI fiber atlas60.63%
  329CBICA: MOE60.58%
  330Automatic Registration Toolbox60.40%
  331Neuroinformatics - The Journal60.36%
  332CBICA: DTIDROID60.27%
  333Zebrafish heart segmentation60.21%
  334CBICA: GONDOLA60.17%
  335Monte Carlo eXtreme (MCX)60.16%
  336IATR60.11%
  337Human Imaging Database (HID)59.73%
  338Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  339SPHARM-PDM Toolbox59.63%
  340Neoseg59.61%
  341iso2mesh59.41%
  342BrainVoyager59.38%
  343Functional Connectivity Community59.20%
  344BRAINSSurfaceStats59.18%
  345Progression Score Model Toolkit59.14%
  346TAPIR58.98%
  347Statistical Methods for Manifold-valued Data58.97%
  348University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software58.93%
  349NIRAL Utilities58.71%
  350The Grid Code Analysis Toolbox (GridCAT)58.71%
  351Scalable Brain Atlas58.15%
  352Disease State Prediction58.15%
  353Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  354pyxnat57.94%
  355Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  356FSL57.90%
  3572008 MICCAI MS Lesion Segmentation Challenge57.85%
  358BiofilmQuant57.09%
  359BRAINSTools57.00%
  3603DSlicerLupusLesionModule56.88%
  361NITRC Enhanced Services56.37%
  362VectorValuedHistogramNormalizer55.65%
  363BraTumIA (Brain Tumor Image Analysis)55.62%
  364AutoTract55.51%
  365Center for Functional Neuroimaging Tech55.47%
  366Spinal Cord Toolbox55.13%
  367International Imaging Genetics Conference54.88%
  368Group Sparse Canonical Correlation Analysis54.75%
  369Draw3D and Meshinator54.46%
  370Group ICA Toolbox (GIFT and EEGIFT)54.37%
  371TumorSim54.27%
  372DTIProcess ToolKit54.23%
  373Subject Order-Independent Group ICA53.68%
  374VMTK in 3D Slicer53.66%
  375NIfTI53.26%
  376MCIC- schizophrenic and matched control data53.00%
  3773d Brain Atlas Reconstructor52.90%
  378Artifact Detection Tools (ART)52.81%
  379BrainVoyager Brain Tutor52.45%
  380C-PAC52.38%
  381Diffusional Kurtosis Estimator52.35%
  382ANTsR52.31%
  383CBS High-Res Brain Processing Tools52.31%
  384STAMP Atlases for Brain Abnormality Detection52.19%
  385Licensing52.09%
  386SpineSegmentation module for 3DSlicer51.99%
  387EEG human categorization data51.96%
  388fMRI Results Comparison Library51.64%
  389Parallel Stochastic Ion Channel Simulator51.43%
  390MRI Defacer51.40%
  391LONI Pipeline Environment51.20%
  392Waxholm Space Atlas of the C57BL/6J Mouse Brain51.19%
  393ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis51.10%
  394VANDPIRE50.79%
  395BRAINSMush50.66%
  396A probabilistic subcortical atlas for PD50.62%
  397factory_t1_dti50.47%
  398NYU CSC TestRetest50.47%
  399Lightweight Data Pipeline50.41%
  400ABSORB for groupwise registration50.29%
  401shapeAnalysisMANCOVA - SPHARM tools49.87%
  402CANDI Neuroimaging Access Point49.84%
  403ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  404ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  405Pipeline system for Octave and Matlab49.34%
  406MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  407Multiple Correlation Function Tool48.96%
  408Maps4Mipav (Exploratory JIST) 48.92%
  409Epsilon Radial Networks48.81%
  410Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations48.77%
  411Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  412GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  413SIVIC48.42%
  414ATPP: Automatic Tractography-based Parcellation Pipeline48.37%
  415Conferences, Workshops and Meetings48.24%
  416PREDiCT48.15%
  417Gibbsconnectome48.05%
  418ANIMA47.79%
  419Simple Medical Imaging Library Interface (SMILI)47.75%
  420UNC CEDARS INFANT ATLAS47.68%
  421BXH/XCEDE Tools47.66%
  422NODDI Matlab Toolbox47.56%
  423GenGen47.52%
  424Single-subject Resting state fMRI Reproducibility Resource47.35%
  425BRAINSFit47.32%
  426Graph Theory GLM (GTG) MATLAB Toolbox47.28%
  427fNIRS Research Database47.26%
  428The Cancer Imaging Archive (TCIA)47.14%
  429BrainSuite46.92%
  430Mixed Effect Model of Genetic-Set and Environment Interaction46.67%
  431SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation46.64%
  432BetA-Series COrrelation46.64%
  433DWI/DTI Quality Control Tool: DTIPrep46.62%
  434MRI Dataset for Hippocampus Segmentation46.59%
  435Task Independent Fluctuations Discussion46.53%
  436FBIRN Image Processing Scripts (FIPS)46.46%
  437Local Manifold Learning for Multi-atlas segmentation46.38%
  438isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab46.14%
  439AHEAD45.91%
  440PESTICA & SLOMOCO: physio and motion correction tools45.73%
  441FreeSurfer45.71%
  442GIMME (Group Iterative Multiple Model Estimation)45.57%
  443Diffusion MRI @ DKFZ Heidelberg45.52%
  444MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data45.11%
  445Statistical Methods for Heterogeneous Neuroimaging Data45.03%
  446Robust Brain Extraction (ROBEX)44.99%
  447Generation R Pediatric MRI Resources44.99%
  448Vervet Probabilistic Atlas44.95%
  449Best Practices for Software Development44.91%
  450CutNII - Custom-angle slicer for brain atlas volumes44.89%
  451Spanish Resting State Network44.84%
  452Wisconsin White Matter Hyperintensities Segmentation Toolbox44.55%
  453NeuroImage Field-of-View Normalization Tool44.45%
  454Bayesian Connectivity Analysis software (BCA)44.44%
  455Optseq - fMRI Event Scheduler44.35%
  456Imeka Tractography Service44.35%
  457Phoneme-Syllable Tsinghua University CS&T 201143.96%
  458MATLAB Tutorial on Diffusion Tensor MRI43.71%
  459EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  460In vivo MEMRI-based Mouse Brain Atlas43.68%
  461Magnetic Resonance Angiography Atlas Dataset43.49%
  462Preprocessed Connectomes Project43.46%
  463QCQP43.44%
  464Human Connectome Project (HCP)43.41%
  465Multicomponent T2 estimation with stimulated echo correction43.38%
  466S-rep Fitting, Statistics, and Segmentation43.22%
  467SRI24 Atlas: Normal Adult Brain Anatomy43.22%
  468Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  469FMRIpower42.92%
  470Brain Connectivity Toolbox42.67%
  471Brainnetome DiffusionKit42.56%
  472BRAINSROIAuto42.50%
  473Graphtools42.47%
  474SLIC: a whole brain parcellation toolbox42.31%
  475NIDB - Neuroinformatics Database42.27%
  476Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function42.14%
  477Atlasing of the basal ganglia42.13%
  478ShapeComplexityIndex41.87%
  479iBEAT41.57%
  480ABC (Atlas Based Classification)41.55%
  481SPM41.55%
  482Brainnetome fMRI toolkit41.40%
  483YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  484CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)41.37%
  485Brainance DTI Module41.33%
  486NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space41.19%
  487HAMMER: Deformable Registration41.09%
  488Cluster reporter41.03%
  489REX41.00%
  490Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  491Neurolucida40.86%
  492CBFBIRN40.45%
  493age-ility40.12%
  494Stereo Investigator40.09%
  4957T Structural MRI scans ATAG39.76%
  496MONSTR Multi Contrast Brain Stripping39.69%
  497POS2SPM39.14%
  498Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)39.10%
  499Quantitative Diffusion Tools39.01%
  500DTI-TEMPLATE-RHESUS-MACAQUES38.90%
  501SegEditing38.76%
  502XNAT38.58%
  503FiberViewerLight38.56%
  504Functional Analysis of Diffusion Tensor38.34%
  505Fast Nonlocal Means for MRI denoising38.14%
  506A Shimadzu to .nirs data converter37.63%
  507LONI Debabeler37.57%
  508VAMCA Cortical Meta-analysis Toolbox37.53%
  509DTI Atlas Builder37.04%
  510BrainCSI37.02%
  511GLIRT36.68%
  512DTI-Reg36.47%
  513Task-based fMRI atlases35.57%
  514Stark Cross-Sectional Aging35.22%
  515JIST Resources for Algorithm Development35.21%
  516Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration35.09%
  517The De-identification Toolbox - A data sharing tool for neuroimaging studies35.02%
  518AMILab35.01%
  519RapidArt34.88%
  520JIP fMRI Analysis Toolkit34.81%
  521AutoSeg34.74%
  522GTRACT34.29%
  523Emory-UNC Developmental Macaque Structural and DTI Atlases34.06%
  524MABMIS: Multi-Atlas Based Segmentation34.03%
  525masked ICA (mICA) Toolbox33.97%
  526cPPI Toolbox for fMRI33.81%
  527CIFTI Connectivity File Format33.76%
  528BrainSolution33.70%
  529CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)33.48%
  530ToolConnect33.34%
  531PyMVPA33.13%
  532Brainscape32.87%
  533DRAMMS Deformable Image Registration Toolbox32.75%
  534DicomBrowser32.69%
  535MriWatcher32.69%
  536ICA Components from Kessler, et al, JAMA Psychiatry 201632.68%
  537Computational Anatomy Toolbox - CAT32.62%
  538MRIcroS32.59%
  539DTI denoising32.30%
  540CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.32.08%
  541ADJUST - EEG Automatic Artifact Removal32.01%
  542ShapeWorks31.68%
  543Diffusion Tractography with Kalman Filter31.56%
  5443-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood31.48%
  545High-quality diffusion-weighted imaging of Parkinson's disease31.40%
  546Slicer3 Example Modules31.22%
  547Clinical Toolbox for SPM31.15%
  548MRTool31.01%
  549GIMIAS30.79%
  550Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)30.60%
  551peak_nii30.58%
  552Functional Connectivity Analysis Tool for near-infrared spectroscopy data30.44%
  553Cerebellar White Matter Atlas30.41%
  554Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  555ASHS: Automatic Segmentation of Hippocampal Subfields30.16%
  556Manually Labeled MRI Brain Scan Database30.01%
  557BASH4RfMRI29.93%
  558Program for optimal design of blocked fMRI experiments29.83%
  559HAMMER Suite29.81%
  560SkullStrippingToolkit29.76%
  561MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis29.75%
  562MRI Studio29.65%
  563NPTK29.57%
  564Templates for In vivo Mouse Brain29.56%
  565Mid-Space-Independent Deformable Image Registration29.49%
  566NITRC GForge Extensions29.39%
  567DFBIdb29.33%
  568GAMBIT29.23%
  569SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  570Paradigm29.19%
  571MIPAV29.14%
  572INSTAR (Infant Joint Segmentation and Registration)29.12%
  573Image Synthesis29.09%
  574NIH Pediatric MRI Data Repository28.80%
  575PHYCAA+: adaptive physiological noise correction for BOLD fMRI28.45%
  576Deformable Template Model for Brain Analysis28.38%
  577NIH-CIDI Lung Segmentation Tool28.33%
  578Group Information Guided ICA28.29%
  579UNC Human Brain Atlas28.19%
  580Numerical Fibre Generator (NFG)27.88%
  581Hierarchical Functional Networks in Resting State fMRI27.67%
  582DICOMConvert27.64%
  583HI-SPEED Software Packets27.49%
  584R-package for adaptive DWI analysis27.46%
  585A label fusion using CRF27.43%
  586fMRI Grocer26.96%
  587SPHARM-MAT26.95%
  588ProCTSeg26.94%
  589MisterI26.85%
  590CleanLine26.76%
  591HFH_DTI_TLE_TOOLS26.71%
  592Template Image Processing Library26.68%
  593Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography26.54%
  594Corpus Callosum Thickness Profile Analysis Pipeline26.48%
  595DTI Fiber Tract Statistics26.38%
  596ARCTIC26.36%
  597DW-MRI registration in FSL26.26%
  598eConnectome26.18%
  599Brainnetome Atlas Viewer26.05%
  600Robust Biological Parametric Mapping25.87%
  601minc-toolkit25.84%
  602Convert MNI coordinates to or from XYZ25.66%
  603Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)25.65%
  604C8: Corpus Callosum Computations25.54%
  605BrainParser25.52%
  606BrainVoyager Viewer25.46%
  607MeshValmet: Validation Metric for Meshes25.24%
  608Brainstorm25.21%
  609ShapePopulationViewer25.01%
  610Gradient Non-linearity Unwarping Tool24.92%
  611Simulated Diffusion-Weighted Datasets24.71%
  612WFU_Pipeline24.55%
  613LORIS24.52%
  614MR Connectome Automated Pipeline (MRCAP)24.52%
  6153DMeshMetric24.46%
  616HistoloZee - 3D histology reconstruction and co-registration with MRI24.36%
  617Multi-fiber Reconstruction from DW-MRI24.16%
  618MIView24.13%
  619MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation24.13%
  620Finsler tractography module for Slicer24.11%
  621FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.04%
  622GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data24.00%
  623Automatic Segmentation Tool Adapter23.93%
  624WFU_BPM23.76%
  625Elastic Net-based Parcellation (ENPA)23.67%
  626TetraMetrix23.65%
  627MNE - Minimum Norm Current Estimates23.56%
  628Colin 3T/7T High-resolution Atlas23.54%
  6293T MRI data set on structural brain-behavior correlations23.38%
  630MASI Label Fusion23.30%
  631R-package for adaptive fMRI analysis23.25%
  632Functional Regression Analysis of DTI23.20%
  633NiiStat23.18%
  634aBEAT23.16%
  635Morphometry BIRN23.14%
  636B0 and eddy current correction for DTI23.07%
  637Diffusion MRI - In-vivo and Phantom Data23.06%
  638Longitudinal Multiple Sclerosis Lesion Imaging Archive22.93%
  639RFT_FDR22.92%
  640SnPM22.86%
  641CCSeg - Corpus Callosum Segmentation22.47%
  642OASIS22.43%
  643volBrain: online MRI segmentation22.37%
  644JHU Proj. in Applied Medical Imaging22.20%
  645Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising22.19%
  646Web Game for Collaborative Labeling22.06%
  647POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  648Spatial Statistical Parametric Mapping21.92%
  649Inter-Group Registration Toolbox21.87%
  650Iterative dual-regression with sparse prior21.85%
  651Estimating Functional Brain Network based on Modularity Prior21.77%
  652Notion ResearchPACS21.68%
  653PICSL Multi-Atlas Segmentation Tool21.54%
  654Camino21.49%
  655LONI Inspector21.42%
  656UManitoba-JHU Functionally-Defined Human White Matter Atlas21.40%
  6574D Atlas Construction21.34%
  658xjView, a viewing tool for SPM21.29%
  659DOTS WM tract segmentation21.17%
  660Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data21.10%
  661Corpus callosum and brain segmentations from ABIDE database21.03%
  662Slicer3 Module Rician noise filter21.03%
  663MGH Neonatal/Pediatric ADC atlases20.91%
  664SOCK20.83%
  665BTK : Baby Brain Toolkit20.79%
  666Standard Amygdalar fMRI Probe Tasks20.76%
  667VoxBo20.55%
  668freesurfR20.36%
  669cortex20.34%
  670A joint sparse partial correlation method for estimating group functional networks20.28%
  671Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation20.25%
  672DentalTools20.18%
  673NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.78%
  674Efficient Permutation Testing19.74%
  675STAPLE19.66%
  676Parallel Graph-theoretical Analysis Toolkit19.63%
  677GAMMA19.54%
  678Generalized Covariance Analysis (gCVA)19.46%
  679imcalc: SPM batch image calulator19.18%
  680Fusion ICA Toolbox (FIT)19.13%
  681INIA19 Primate Brain Atlas19.09%
  682NIRx2nirs: A NIRx to .nirs data converter18.97%
  683ALVIN - Lateral Ventricle Segmentation18.88%
  684Hitachi2nirs18.78%
  685MOCA18.76%
  686Connectome Workbench18.74%
  687FIV18.55%
  688Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.43%
  689Randomized Denoising Autoencoders for Neuroimaging18.34%
  690Displacement Field Viewer18.15%
  691AtlasConstructionToolkit18.12%
  692DW-MRI Random Walk Simulator18.10%
  693Penn Hippocampus Atlas18.08%
  694Landman NeuroImaging Tools18.01%
  695Resource Ontology Discussion Group18.00%
  696BrainNetworkConstructionAnalysisPlatform17.95%
  697SINOMO (SIngular NOde MOtifs)17.86%
  698NVM17.75%
  699AURA tools : AUtomated Retinal Analysis tools17.74%
  700MouseBIRN Atlasing Toolkit (MBAT)17.55%
  701CMFreg17.25%
  702fMRI Classification in R17.15%
  703CBICA: WMLS (White Matter Lesion Segmentation)17.06%
  704SPM_SS - fMRI functional localizers17.02%
  705Diffusion MRI Tool16.96%
  706BCILAB16.85%
  707Brain Segmentation Testing Protocol16.77%
  708Automated Image Registration (AIR)16.52%
  709resting-state pediatric imaging template16.48%
  710MIAS Registration Toolkit16.33%
  711XFSL: An FSL toolbox16.19%
  712Jim15.89%
  713ValMap: simple statistical mapping tool15.79%
  714CoCoMac-Paxinos3D viewer15.74%
  715NeuroLens15.71%
  716Segmentation Validation Engine15.51%
  717Wavelet-based Image Fusion15.44%
  718Single-index Varying Coefficient Model for Functional Responses15.43%
  719NIRS-SPM15.33%
  720vis: SPM Visualized Statistics toolbox15.32%
  721MGDM: Multi Geometric Deformable Model15.32%
  722IDeA Lab brain image processing suite15.31%
  723Internet Brain Volume Database (IBVD)15.25%
  724TractoR: Tractography with R15.17%
  725DIAMOND15.11%
  726DICCCOL predictor (v0.1)14.69%
  727CBICA: COMPARE14.56%
  728CamBA14.47%
  729Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI14.42%
  730Brainwaver14.34%
  731Serotonin Transporter HighResolution PET Template14.31%
  732MeshGen - Surface meshes from volumetric segmentation data14.20%
  733MRI Neuroanatomy Labeling Services14.19%
  734Level-set Segmentation for Slicer314.18%
  735Measure Projection Toolbox (MPT)14.10%
  736Subject Library14.04%
  737Cluster Extent Correction13.99%
  738The Brain Coactivation Map13.99%
  739Using Make for Neuroimaging Workflow: Manual and Examples13.99%
  740LONI De-identification Debablet13.90%
  741Ultra-high field atlas for DBS planning13.69%
  742Microstructural correlation toolbox13.53%
  743BrainDecoderToolbox13.51%
  744NeuroPub Visualizer13.29%
  745BrainFX13.20%
  746mach2dat13.14%
  747Pythagorean Displacement and Motion Regressors13.05%
  748Kymata Atlas13.04%
  749N3 - MINC B0 nonuniformity correction12.85%
  750Wisconsin Cortical Thickness Analysis (CTA) Toolbox12.80%
  751gCCA12.72%
  752mach2qtl12.56%
  753VarTbx – Variability Toolbox12.55%
  754BrainVision Analyzer12.44%
  755fanDTasia Java Applet: DT-MRI Processing12.41%
  756SVV12.37%
  757Brainvox12.36%
  758MouseTracker12.01%
  759M311.92%
  760MEG Tools11.61%
  761Rodent Brain Extraction Tool11.23%
  762Caret11.02%
  763UNC Primate Brain Atlas10.91%
  764INCF10.90%
  765MaCH10.49%
  766ShapeComplexAtlas10.06%
  767CDF-HC PointSetReg10.02%
  768MaCH-Admix9.678%
  769Distributome9.123%