Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1162983
2
BIDScoin
1099543
3
MRIcron
1032198
4
ITK-SNAP
482204
5
FCP/INDI PRIVATE SITE
405586
6
IIT Human Brain Atlas (v.5.0)
246984
7
CONN : functional connectivity toolbox
235527
8
MRIcroGL
215611
9
fMRI-CPCA
211373
10
1000 Functional Connectomes Project
186455
11
BrainNet Viewer
135272
12
BXH/XCEDE Tools
119492
13
NIDB - Neuroinformatics Database
110831
14
DTI-TK
100383
15
age-ility
94718
16
BioImage Suite
87257
17
IBSR
85411
18
Solar Eclipse Imaging Genetics tools
85073
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
82153
20
BrainFlow
81185
21
Multi-Modal MRI Reproducibility Resource
80449
22
JIST: Java Image Science Toolkit
79923
23
WFU_PickAtlas
67531
24
GIFTI
62836
25
NITRC Computational Environment (NITRC-CE)
60592
26
PANDA: a pipeline tool for diffusion MRI
57374
27
The Neuro Bureau
54149
28
3T DWI test-retest reliability dataset
52634
29
Functional Imaging BIRN
51609
30
Multimodal Visual Consciousness Study Dataset
50484
31
Standard Amygdalar fMRI Probe Tasks
49771
32
TOADS-CRUISE Brain Segmentation Tools
45945
33
Generalized PPI Toolbox
45896
34
QuickNII - Serial section aligner to volumetric atlases
44221
35
fNIRS Data Analysis Environment
43896
36
MIITRA atlas
40548
37
Network-Based Statistic (NBS)
40332
38
EEGLAB
40116
39
BrainMap Database
39795
40
FreeSurfer
38003
41
NeuroImaging Analysis Kit (NIAK)
37600
42
Brain Biomechanics Imaging Resources
36642
43
UNC 0-1-2 Infant Atlases
36086
44
Graph Theory GLM (GTG) MATLAB Toolbox
35149
45
DWI/DTI Quality Control Tool: DTIPrep
33427
46
Melbourne Subcortex Atlas
33136
47
TumorSim
32268
48
CBS High-Res Brain Processing Tools
32076
49
Homer2
31979
50
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
30656
51
NYU CSC TestRetest
29268
52
NeuroDebian
28895
53
Anima
28520
54
BrainVisa Morphologist extensions
28454
55
4D UNC Neonatal and Infant Cortical Surface Atlases
27772
56
XNAT Extras
27080
57
SPHARM-PDM Toolbox
25107
58
Neuroimaging Made Easy Blog
24218
59
SRI24 Atlas: Normal Adult Brain Anatomy
23666
60
BrainMask Volume Processing Tool
23493
61
CANDI Neuroimaging Access Point
23047
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
22866
63
ANDA
22497
64
3DSlicerLupusLesionModule
21612
65
ShapePopulationViewer
21418
66
Data Format Tools
21165
67
Fast Nonlocal Means for MRI denoising
21160
68
Vaa3D and Vaa3D-Neuron
20904
69
MRtrix
20626
70
Surf Ice
19883
71
Mango
19834
72
Group ICA Toolbox (GIFT and EEGIFT)
19810
73
Awake Rat rsfMRI Database
19594
74
Automatic Registration Toolbox
19330
75
Hammer And WML Modules for 3D Slicer
19182
76
Multi-site Frequency Drift MR Spectroscopy
19004
77
AutoSeg
18754
78
MITK Diffusion
18637
79
Subject Order-Independent Group ICA
18258
80
NeuroDOT
18135
81
GRETNA
18024
82
Talairach Daemon
17980
83
Human Imaging Database (HID)
17929
84
DCP：Diffusion Connectome Pipeline
17691
85
ENIGMA-DTI pipeline
17540
86
Diffusion Toolkit / TrackVis
17376
87
Freesurfer fsaverage
17370
88
BrainSuite
17291
89
resting-state fMRI of patients with pre-eclampsia and healthy pregnant women
17106
90
3D Slicer
17083
91
Spatially Constrained Parcellation
17071
92
Computational Morphometry Toolkit (CMTK)
17015
93
MARS (Multi-Atlas Robust Segmentation)
16163
94
ReproNim: A Center for Reproducible Neuroimaging Computation
16101
95
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15936
96
FSL
14966
97
3DMeshMetric
14939
98
Maps4Mipav (Exploratory JIST)
14883
99
Nutil - Neuroimaging utilities
14452
100
Artifact Detection Tools (ART)
14358