Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.68%
  21000 Functional Connectomes Project97.05%
  3ITK-SNAP95.80%
  4BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6CBICA: CLASSIC93.29%
  7rapidtide92.34%
  8MRIcroGL92.15%
  9Rosetta Bit90.88%
  10DTI-TK90.69%
  11Functional Mixed Processes Models89.05%
  12Hadoop for data colocation89.04%
  13Multi-Modal MRI Reproducibility Resource88.48%
  14PANDA: a pipeline tool for diffusion MRI88.39%
  15MPScope88.22%
  16TOADS-CRUISE Brain Segmentation Tools86.58%
  17BrainNet Viewer86.55%
  18CONN : functional connectivity toolbox85.21%
  19JIST: Java Image Science Toolkit84.92%
  20CBICA: PREDICT84.68%
  21Kurtosis Imaging Network - KIN84.52%
  22BRAINSTestData84.43%
  23CBICA: Brain Tumor Modeling - Coupled Solver84.40%
  24ITools Resourceome84.16%
  25Functional Imaging BIRN83.98%
  26CBICA: Brain Anatomy Simulator83.98%
  27TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA83.25%
  28Local Label Learning (LLL) Segmentation83.13%
  29HD Neuro-Informatics83.02%
  30Infant Macaque MRI And DTI Templates82.26%
  31Lumina LP- 400 Response System82.21%
  32Philips Users Community82.17%
  33HERMES81.06%
  34NUTMEG80.78%
  35ODIN80.52%
  36NeuroDebian80.51%
  37Stochastic Tractography System80.43%
  38Vaa3D and Vaa3D-Neuron80.07%
  39Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  40fMRIstat79.79%
  41Bayesian longitudinal low-rank regression79.68%
  42map3d79.67%
  43Turbo-BrainVoyager79.64%
  44Solar Eclipse Imaging Genetics tools79.48%
  45DSI Studio79.13%
  463T DWI test-retest reliability dataset78.72%
  47WFU_PickAtlas78.68%
  48Seg3D78.68%
  49Ogles - OpenGL/OIV Stereotactic Tool78.64%
  50UNC/Utah NAMIC DTI Fiber Analysis Framework78.64%
  51Umeå Brain Arteries78.64%
  52iView X MRI-LR - Eye Tracking for fMRI78.64%
  53L-Neuron78.49%
  54MITK Diffusion78.38%
  55XCEDE Schema78.35%
  56BioSig78.08%
  57MASIMatlab78.08%
  58ToolConnect77.88%
  59Curry 777.81%
  60GazeReader77.81%
  61Functional ROI Atlas77.78%
  62BluePyOpt77.70%
  63SurfStat77.60%
  64CBRAIN77.49%
  65GPU based affine registration77.46%
  66FieldTrip77.34%
  67Biomag Discussion Group on Yahoo77.32%
  68VALiDATe29 squirrel monkey brain atlas77.21%
  69GIFTI77.18%
  70XNBC77.14%
  71Brede Toolbox77.01%
  72EEG Toolbox76.93%
  73HCP Harvard/MGH-UCLA76.85%
  74EEProbe76.84%
  75epi-example-dicom76.63%
  76E-Prime Extensions for fMRI76.62%
  77National Database for Autism Research76.52%
  78TurtleSeg76.48%
  79MindSeer76.42%
  80COINS76.26%
  81EONS76.25%
  82Insight Toolkit76.17%
  83Spatial Analysis 3D76.15%
  84ASA - Advanced Source Analysis76.11%
  85NIPY Diffusion Imaging Analysis76.10%
  86Brain Products' EEG/fMRI Hardware76.05%
  87Cytoseg75.83%
  88HCP WU-Minn Consortium75.77%
  89In vivo MEMRI-based Rat Brain Atlas75.71%
  90NICE-SIGN75.68%
  91MNI Macaque Atlases75.65%
  92GesTr75.60%
  93cmrep75.59%
  94ParaView75.52%
  95PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  96Framework for Open Programmatic Access75.38%
  97LIBEEP75.38%
  98NIPY File IO75.18%
  99Micro-Manager75.17%
  100CBICA: PORTR75.13%
  101A robust method for correcting partial volume effect in ASL data75.12%
  102NFT: Neuroelectromag Forward Modeling75.04%
  103CBICA: ODVBA74.97%
  104Brainsight74.90%
  105Faceted Search Based Ontology Visualizer74.89%
  106INCF Neuroimaging Data Sharing74.89%
  107Prospective Acquisition CorrEction (PACE) Resting State EPI data74.86%
  108Net Station74.81%
  109UCLA Multimodal Connectivity Database74.77%
  110FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  111brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  112EEGVIS74.66%
  113ProbabilisticBiasCorrection74.60%
  114I/OWA 374.57%
  115dtiBrainScope74.54%
  116EEGLAB74.54%
  117DICOM_UploadGUI74.52%
  118Connectome File Format (CFF)74.48%
  119APERTURE74.44%
  120mask_explorer74.44%
  121Bisque74.41%
  122BrainLiner.jp74.34%
  123Advanced Normalization Tools74.32%
  124nitime74.27%
  125INVIZIAN74.26%
  126Anatomist74.21%
  127NordicNeuroLab74.14%
  128XCEDE Schema74.09%
  129Presentation74.05%
  130connectir74.03%
  131NC-IGT Fast Imaging Library74.00%
  132Age Related Atrophy Dataset74.00%
  133ERPLAB73.92%
  134VIEWPixx73.91%
  135CANDI Share: Schizophrenia Bulletin 200873.91%
  136Triangle BioSystems73.89%
  137BrainMaps.org73.86%
  138Pydicom73.82%
  139MINC - Medical Image NetCDF73.82%
  140The fMRI Data Center73.82%
  141PySurfer73.76%
  142XNAT Extras73.59%
  143NITRC Community73.54%
  144Generalized PPI Toolbox73.54%
  145Statistics Online Computational Resource73.45%
  146dcm2nii73.43%
  147TARQUIN MRS analysis package73.40%
  148NIRx NIRS Neuroimaging73.39%
  149CBICA: Datasets73.38%
  150fMRI-CPCA73.37%
  151PyNIfTI73.36%
  152Surf Ice73.32%
  153Neuroimaging Made Easy Blog73.31%
  154COGNISION (TM) System73.25%
  155OpenElectrophy73.22%
  156NIPY Community73.20%
  157NeuroScope72.95%
  158ASL data processing tool box72.94%
  159MagPro Magnetic Stimulator (TMS)72.94%
  160Lipsia72.87%
  161MedINRIA72.87%
  162Mouse Connectome Project (MCP)72.79%
  163Fiber Tracking Tool72.78%
  164Fiber-tracking based on Finsler distance72.78%
  165SumsDB Database72.73%
  166Celeritas: Fiber Optic Response System72.72%
  167CUDA accelerated spherical model M/EEG72.66%
  168False Discovery Rate Weighted72.64%
  169DATAPixx72.63%
  170OpenFMRI72.62%
  171DONE: Detection of Outlier NEurons72.55%
  172ArtRepair for robust fMRI72.45%
  173WhiteText - annotated neuroscience text72.44%
  174NIPY Structural and Functional Analysis72.36%
  175CLEAVE: Large Data Set ANOVA72.21%
  176scikit-learn72.17%
  177Mag Design and Engineering72.10%
  178Working Memory Trainer72.06%
  179PPMI72.00%
  180SFMProject71.92%
  181vuTools71.88%
  182Hitachi Optical Topography System71.88%
  183Network-Based Statistic (NBS)71.87%
  184BRAINSConstellationDetector71.85%
  185Computational Morphometry Toolkit (CMTK)71.68%
  186Nilearn71.64%
  187Hyperion: MRI Digital Projection System71.59%
  188ShapeViewer71.52%
  189Normative Independent Component Analysis71.48%
  190LDDMM71.43%
  191ENIGMA-DTI pipeline71.42%
  192fNIR Devices71.38%
  193OpenMEEG71.38%
  194Data Format Tools71.26%
  195TORTOISE71.25%
  196NeuroElf71.23%
  197ADNI71.16%
  1984D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  199COST71.02%
  200GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity71.01%
  201BioImage Suite70.93%
  202NeuroSynth70.83%
  203Viking Viewer for Connectomics70.74%
  204SR Research EyeLink Eye Trackers70.67%
  205LONI Provenance Editor70.63%
  206CoCoMac Brain Connectivity Database70.62%
  207MazeSuite70.54%
  208BrainBrowser70.49%
  209Pipeline Neuroimaging VirtualEnvironment70.41%
  210Biomedical Informatics Research Network70.34%
  211Disease State Prediction70.12%
  212Open Connectome Project70.04%
  213REST: a toolkit for resting-state fMRI69.97%
  214OEI fMRI compatible olfactometer69.96%
  215BrainVisa Morphologist extensions69.83%
  216Source Information Flow Toolbox69.78%
  217Journals69.76%
  218Fast Fourier Transform (FFT) JavaLibrary69.75%
  219Laboratory of Neuro Imaging (LONI)69.74%
  220IMOD - 3D Reconstruction and Analysis69.72%
  221Mouse BIRN69.44%
  222BrainGraph Editor 1.0 Beta69.44%
  223LIMO EEG69.17%
  224Center for Computational Biology (CCB)69.15%
  225FADTTSter68.99%
  226BrainVISA68.91%
  227Synchronized Histological Image View Arc68.86%
  228cbiNifti: Matlab/Octave Nifti library68.82%
  229Analyze68.78%
  230DPARSF68.68%
  231Textpresso - literature search engine68.67%
  232NeuroshareLibrary68.65%
  233BrainMap Database68.65%
  234SMAC: Spatial Multi-category Angle-based Classifier68.62%
  235E-Prime68.58%
  236UNC 0-1-2 Infant Atlases68.56%
  237PST MRI Simulator68.50%
  238Waxholm Space Atlas of the Sprague Dawley Rat Brain68.47%
  239The Neuro Bureau68.21%
  240PsychoPy68.14%
  241NCANDA: Data Integration Component68.11%
  242CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  243Grantees Meeting for NITRC68.08%
  244Create DWI Atlas67.98%
  245Homer267.95%
  246BrainMagix SPM Viewer67.70%
  247BioMesh3D67.70%
  248Multiscale Weighted Principal Component Regression67.66%
  249NeuroWeb - NeuroImaging Database67.63%
  250NeuriteTracer67.45%
  251MultiTracer version 267.40%
  252dinifti67.32%
  253Low Resolution Brain Electromagnetic Tomography67.25%
  254N2A67.19%
  255S3DL Sparse Dictionary Learning based MR Image and Lesion Segmentation67.00%
  256Brede Wiki67.00%
  257SCIRun66.94%
  258Rockland Download Link Script66.78%
  259MEGSIM66.69%
  260Mango66.49%
  261NIPY Pipeline and Interfaces66.47%
  262CAMINO-TRACKVIS66.47%
  263HDBIG66.40%
  2643D Slicer66.32%
  265ImageVis3D66.18%
  266Spatially Constrained Parcellation66.06%
  267BrainMask Volume Processing Tool65.98%
  268Group Sparse Canonical Correlation Analysis65.93%
  269Signed Differential Mapping65.86%
  270fMRI Results Comparison Library65.84%
  271IIT Human Brain Atlas (v.4.1)65.71%
  272Books65.58%
  273Group Level Imputation of Statistic Maps65.49%
  274Connectome Viewer65.38%
  275SCRalyze65.38%
  276ShapeTools65.31%
  277HFH_DTI_DATA65.30%
  278MRBrainS Evaluation Framework / Challenge65.15%
  279PICASSO skull stripping tool65.14%
  280ExPosition Packages65.09%
  281MRI_CVPR65.08%
  282NIREP64.96%
  283Parkinson's Disease Discovery Database64.60%
  284UNC-Wisconsin Neurodevelopment Rhesus MRI Database64.27%
  285Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  286MARS (Multi-Atlas Robust Segmentation)64.18%
  287Diffusion Warp64.08%
  288Non-rigid groupwise registration method63.75%
  289Diffusion Toolkit / TrackVis63.57%
  290Web Interfaces for Multiscale Images63.57%
  291MarsBaR region of interest toolbox63.54%
  292Augmented Reality Mirror63.45%
  293fNIRS Data Analysis Environment63.40%
  294Hammer And WML Modules for 3D Slicer63.34%
  295Temporal-lobe.com63.32%
  296NeoSegPipeline63.20%
  297Brain Entropy in space and time (BEst)63.14%
  298FSL extensions63.14%
  299Medical Image Visualization and Analysis63.06%
  300AFNI63.05%
  301SPM for fNIRS toolbox62.84%
  302Neuroimaging Data Access Group62.68%
  303Talairach Daemon62.44%
  304The Cognitive Atlas62.43%
  305NeuroImaging Analysis Kit (NIAK)62.30%
  306Tractography based on Riemannian geodesics and tensor adjugates62.21%
  307MRtrix62.07%
  308Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration61.88%
  309Mindboggle-101 manually labeled brains61.81%
  310Monte Carlo Simulation Software: tMCimg61.67%
  311Neural ElectroMagnetic Ontologies61.65%
  312PubBrain Database61.64%
  313MoTrak: Head Motion Tracking System61.63%
  314Rodent Cortical Thickness Analysis61.39%
  315CBICA: PHI Estimator61.34%
  316Anima61.22%
  317CIGAL61.11%
  318Mesh-based Monte Carlo (MMC)60.92%
  319MRI denoising60.63%
  320The UNC EBDS neonatal DTI fiber atlas60.63%
  321CBICA: MOE60.58%
  322GRETNA60.52%
  323IBSR60.49%
  324SPHARM-PDM Toolbox60.44%
  325Automatic Registration Toolbox60.43%
  326Neuroinformatics - The Journal60.36%
  327CBICA: DTIDROID60.27%
  328Zebrafish heart segmentation60.21%
  329CBICA: GONDOLA60.17%
  330Monte Carlo eXtreme (MCX)60.16%
  331IATR60.11%
  332Human Imaging Database (HID)59.91%
  333Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  334Neoseg59.61%
  335iso2mesh59.41%
  336BrainVoyager59.38%
  337Functional Connectivity Community59.20%
  338BRAINSSurfaceStats59.18%
  339Progression Score Model Toolkit59.14%
  340TAPIR58.98%
  341Statistical Methods for Manifold-valued Data58.97%
  342University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software58.93%
  343NIRAL Utilities58.71%
  344The Grid Code Analysis Toolbox - GridCAT58.33%
  345Scalable Brain Atlas58.15%
  346Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  347pyxnat57.94%
  348Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  349BRAINSTracer57.82%
  350FSL57.81%
  3512008 MICCAI MS Lesion Segmentation Challenge57.66%
  352BRAINSCortex57.21%
  353BiofilmQuant57.09%
  3543DSlicerLupusLesionModule57.04%
  355NITRC Enhanced Services55.92%
  356VectorValuedHistogramNormalizer55.65%
  357BraTumIA (Brain Tumor Image Analysis)55.62%
  358AutoTract55.51%
  359Generation R Pediatric MRI Resources55.44%
  360Center for Functional Neuroimaging Tech55.28%
  361Spinal Cord Toolbox55.13%
  362International Imaging Genetics Conference54.88%
  363Draw3D and Meshinator54.46%
  364Group ICA Toolbox (GIFT and EEGIFT)54.37%
  365DTIProcess ToolKit54.23%
  366TumorSim54.04%
  367Subject Order-Independent Group ICA54.02%
  368VMTK in 3D Slicer53.66%
  369NIfTI53.24%
  370ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis53.00%
  371MCIC- schizophrenic and matched control data53.00%
  3723d Brain Atlas Reconstructor52.90%
  373Artifact Detection Tools (ART)52.64%
  374BrainVoyager Brain Tutor52.52%
  375C-PAC52.38%
  376ANTsR52.31%
  377STAMP Atlases for Brain Abnormality Detection52.19%
  378Licensing52.02%
  379SpineSegmentation module for 3DSlicer51.99%
  380EEG human categorization data51.96%
  381Waxholm Space Atlas of the C57BL/6J Mouse Brain51.64%
  382Diffusional Kurtosis Estimator51.63%
  383LONI Pipeline Environment51.45%
  384CBS High-Res Brain Processing Tools51.44%
  385Parallel Stochastic Ion Channel Simulator51.43%
  386MRI Defacer51.41%
  387Gibbsconnectome51.29%
  388VANDPIRE50.79%
  389BRAINSMush50.66%
  390A probabilistic subcortical atlas for PD50.62%
  391factory_t1_dti50.47%
  392ABSORB for groupwise registration50.41%
  393Lightweight Data Pipeline50.41%
  394CANDI Neuroimaging Access Point50.03%
  395NYU CSC TestRetest49.98%
  396Pipeline system for Octave and Matlab49.95%
  397shapeAnalysisMANCOVA - SPHARM tools49.87%
  398ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  399ReproNim: A Center for Reproducible Neuroimaging Computation49.50%
  400MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  401Maps4Mipav (Exploratory JIST) 49.08%
  402Multiple Correlation Function Tool48.96%
  403Epsilon Radial Networks48.81%
  404Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations48.77%
  405Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  406ATPP: Automatic Tractography-based Parcellation Pipeline48.59%
  407GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  408SIVIC48.42%
  409Conferences, Workshops and Meetings48.24%
  410Graph Theory GLM (GTG) MATLAB Toolbox47.95%
  411ANIMA47.79%
  412UNC CEDARS INFANT ATLAS47.68%
  413BXH/XCEDE Tools47.61%
  414GenGen47.52%
  415NODDI Matlab Toolbox47.41%
  416Single-subject Resting state fMRI Reproducibility Resource47.35%
  417BRAINSFit47.32%
  418fNIRS Research Database47.26%
  419The Cancer Imaging Archive (TCIA)47.14%
  420FBIRN Image Processing Scripts (FIPS)46.84%
  421Task Independent Fluctuations Discussion46.75%
  422Mixed Effect Model of Genetic-Set and Environment Interaction46.67%
  423SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation46.64%
  424MRI Dataset for Hippocampus Segmentation46.59%
  425Local Manifold Learning for Multi-atlas segmentation46.38%
  426BrainSuite46.32%
  427Simple Medical Imaging Library Interface (SMILI)46.30%
  428GIMME (Group Iterative Multiple Model Estimation)46.23%
  429BetA-Series COrrelation46.20%
  430Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography46.09%
  431DWI/DTI Quality Control Tool: DTIPrep45.96%
  432AHEAD45.91%
  433FreeSurfer45.89%
  434PESTICA & SLOMOCO: physio and motion correction tools45.57%
  435Diffusion MRI @ DKFZ Heidelberg45.52%
  436CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)45.38%
  437CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)45.34%
  438Wisconsin White Matter Hyperintensities Segmentation Toolbox45.14%
  439MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data45.11%
  440isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab45.06%
  441Statistical Methods for Heterogeneous Neuroimaging Data45.03%
  442Vervet Probabilistic Atlas44.95%
  443Best Practices for Software Development44.91%
  444CutNII - Custom-angle slicer for brain atlas volumes44.89%
  445Spanish Resting State Network44.84%
  446NeuroImage Field-of-View Normalization Tool44.45%
  447Bayesian Connectivity Analysis software (BCA)44.44%
  448Optseq - fMRI Event Scheduler44.42%
  449Imeka Tractography Service44.35%
  450MONSTR Multi Contrast Brain Stripping44.34%
  451Robust Brain Extraction (ROBEX)44.30%
  452MATLAB Tutorial on Diffusion Tensor MRI43.97%
  453Phoneme-Syllable Tsinghua University CS&T 201143.96%
  454EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  455In vivo MEMRI-based Mouse Brain Atlas43.68%
  456Magnetic Resonance Angiography Atlas Dataset43.49%
  457Preprocessed Connectomes Project43.46%
  458QCQP43.44%
  459Human Connectome Project (HCP)43.41%
  460Multicomponent T2 estimation with stimulated echo correction43.38%
  461SLIC: a whole brain parcellation toolbox43.34%
  462S-rep Fitting, Statistics, and Segmentation43.22%
  463SRI24 Atlas: Normal Adult Brain Anatomy43.16%
  464Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  465FMRIpower42.59%
  466Brainnetome DiffusionKit42.56%
  467Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function42.53%
  468BRAINSROIAuto42.50%
  469Brain Connectivity Toolbox42.48%
  470Graphtools42.47%
  471NIDB - Neuroinformatics Database42.27%
  472Brainnetome fMRI toolkit41.88%
  473ShapeComplexityIndex41.87%
  474ABC (Atlas Based Classification)41.79%
  475Atlasing of the basal ganglia41.76%
  476YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  477Brainance DTI Module41.33%
  478NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space41.15%
  479iBEAT41.15%
  480Longitudinal Multiple Sclerosis Lesion Imaging Archive41.07%
  481Cluster reporter41.03%
  482HAMMER: Deformable Registration41.02%
  483SPM41.01%
  484Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  485Neurolucida40.86%
  486REX40.71%
  487CBFBIRN40.45%
  4887T Structural MRI scans ATAG40.43%
  489age-ility40.15%
  490Stereo Investigator40.09%
  491POS2SPM39.14%
  492Quantitative Diffusion Tools39.01%
  493Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)38.99%
  494DTI-TEMPLATE-RHESUS-MACAQUES38.88%
  495XNAT38.80%
  496SegEditing38.76%
  497FiberViewerLight38.56%
  498Functional Analysis of Diffusion Tensor38.37%
  499Fast Nonlocal Means for MRI denoising38.09%
  500VAMCA Cortical Meta-analysis Toolbox37.53%
  501LONI Debabeler37.30%
  502GLIRT37.08%
  503DTI Atlas Builder37.04%
  504BrainCSI37.02%
  505DTI-Reg36.47%
  506The De-identification Toolbox - A data sharing tool for neuroimaging studies36.44%
  507Mid-Space-Independent Deformable Image Registration36.31%
  508Task-based fMRI atlases35.59%
  509JIST Resources for Algorithm Development35.49%
  510Stark Cross-Sectional Aging35.22%
  511JIP fMRI Analysis Toolkit35.05%
  512AutoSeg35.05%
  513AMILab35.01%
  514RapidArt34.88%
  515GTRACT34.29%
  516masked ICA (mICA) Toolbox34.20%
  517MRTool34.10%
  518Computational Anatomy Toolbox - CAT34.10%
  519Emory-UNC Developmental Macaque Structural and DTI Atlases34.06%
  520BrainSolution33.90%
  521MABMIS: Multi-Atlas Based Segmentation33.81%
  522cPPI Toolbox for fMRI33.81%
  523MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis33.69%
  524INSTAR (Infant Joint Segmentation and Registration)33.21%
  525PyMVPA33.13%
  526CIFTI Connectivity File Format33.09%
  527A Shimadzu to .nirs data converter33.04%
  528CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.33.00%
  529Brainscape32.77%
  530MriWatcher32.69%
  531ICA Components from Kessler, et al, JAMA Psychiatry 201632.68%
  532DRAMMS Deformable Image Registration Toolbox32.54%
  533DTI denoising32.30%
  534MRIcroS32.21%
  535DicomBrowser32.08%
  536ShapeWorks31.68%
  537Image Synthesis31.60%
  538Slicer3 Example Modules31.56%
  539Diffusion Tractography with Kalman Filter31.51%
  540Cerebellar White Matter Atlas31.32%
  541ADJUST - EEG Automatic Artifact Removal31.28%
  5423-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood31.12%
  543Functional Connectivity Analysis Tool for near-infrared spectroscopy data31.08%
  544peak_nii31.00%
  545GIMIAS30.79%
  546High-quality diffusion-weighted imaging of Parkinson's disease30.70%
  547Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  548HAMMER Suite30.04%
  549MRI Studio29.94%
  550BASH4RfMRI29.93%
  551SkullStrippingToolkit29.85%
  552Manually Labeled MRI Brain Scan Database29.83%
  553Program for optimal design of blocked fMRI experiments29.83%
  554ASHS: Automatic Segmentation of Hippocampal Subfields29.77%
  555GAMBIT29.74%
  556NPTK29.57%
  557Clinical Toolbox for SPM29.52%
  558HFH_DTI_TLE_TOOLS29.51%
  559Paradigm29.45%
  560MIPAV29.40%
  561DFBIdb29.33%
  562SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  563BRAINSDemonWarp29.19%
  564NITRC GForge Extensions29.08%
  565Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)28.95%
  566Templates for In vivo Mouse Brain28.85%
  567fMRI Grocer28.81%
  568NIH Pediatric MRI Data Repository28.78%
  569DICOMConvert28.59%
  570PHYCAA+: adaptive physiological noise correction for BOLD fMRI28.45%
  571Deformable Template Model for Brain Analysis28.38%
  572NIH-CIDI Lung Segmentation Tool28.35%
  573Group Information Guided ICA28.29%
  574Numerical Fibre Generator (NFG)28.22%
  575Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)28.07%
  576R-package for adaptive DWI analysis28.03%
  577Hierarchical Functional Networks in Resting State fMRI27.97%
  578Colin 3T/7T High-resolution Atlas27.85%
  579UNC Human Brain Atlas27.79%
  580HI-SPEED Software Packets27.74%
  581A label fusion using CRF27.43%
  582Brainnetome Atlas Viewer27.35%
  583HistoloZee - 3D histology reconstruction and co-registration with MRI27.26%
  584SPHARM-MAT27.08%
  585ProCTSeg26.94%
  586Template Image Processing Library26.91%
  587MisterI26.85%
  588C8: Corpus Callosum Computations26.61%
  589Corpus Callosum Thickness Profile Analysis Pipeline26.57%
  590DW-MRI registration in FSL26.51%
  591DTI Fiber Tract Statistics26.47%
  592ARCTIC26.32%
  593eConnectome26.25%
  594CleanLine26.16%
  595ShapePopulationViewer26.11%
  596minc-toolkit25.84%
  597Robust Biological Parametric Mapping25.74%
  598Convert MNI coordinates to or from XYZ25.66%
  599BrainVoyager Viewer25.57%
  600BrainParser25.52%
  601MeshValmet: Validation Metric for Meshes25.49%
  6023DMeshMetric25.41%
  603Simulated Diffusion-Weighted Datasets25.26%
  604Gradient Non-linearity Unwarping Tool25.06%
  605MR Connectome Automated Pipeline (MRCAP)25.05%
  606Standard Amygdalar fMRI Probe Tasks24.99%
  607WFU_Pipeline24.77%
  608LORIS24.52%
  6093T MRI data set on structural brain-behavior correlations24.31%
  610MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation24.28%
  611MIView24.25%
  612Multi-fiber Reconstruction from DW-MRI24.16%
  613Finsler tractography module for Slicer24.11%
  614Automatic Segmentation Tool Adapter24.10%
  615GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data24.10%
  616FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.04%
  617TetraMetrix23.91%
  618Brainstorm23.81%
  619WFU_BPM23.75%
  620MASI Label Fusion23.69%
  621MNE - Minimum Norm Current Estimates23.45%
  622R-package for adaptive fMRI analysis23.40%
  623Functional Regression Analysis of DTI23.20%
  624Morphometry BIRN23.14%
  625SnPM23.14%
  626B0 and eddy current correction for DTI23.07%
  627Diffusion MRI - In-vivo and Phantom Data22.99%
  628RFT_FDR22.92%
  629aBEAT22.81%
  630volBrain: online MRI segmentation22.77%
  631Elastic Net-based Parcellation (ENPA)22.61%
  632OASIS22.44%
  633CCSeg - Corpus Callosum Segmentation22.42%
  634Corpus callosum and brain segmentations from ABIDE database22.37%
  635JHU Proj. in Applied Medical Imaging22.20%
  636Web Game for Collaborative Labeling22.15%
  637PICSL Multi-Atlas Segmentation Tool22.06%
  638Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising22.04%
  639Inter-Group Registration Toolbox22.02%
  640POLGUI- Matlab GUI for Polhemus Fastrak 22.02%
  641Notion ResearchPACS21.93%
  642Spatial Statistical Parametric Mapping21.92%
  643Camino21.88%
  644Iterative dual-regression with sparse prior21.85%
  645MGH Neonatal/Pediatric ADC atlases21.78%
  646Estimating Functional Brain Network based on Modularity Prior21.77%
  647LONI Inspector21.60%
  648xjView, a viewing tool for SPM21.59%
  649DOTS WM tract segmentation21.58%
  6504D Atlas Construction21.25%
  651A joint sparse partial correlation method for estimating group functional networks21.16%
  652Slicer3 Module Rician noise filter21.11%
  653Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data21.10%
  654SOCK20.87%
  655NiiStat20.86%
  656VoxBo20.83%
  657BTK : Baby Brain Toolkit20.79%
  658Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation20.71%
  659cortex20.57%
  660freesurfR20.36%
  661DentalTools20.18%
  662Parallel Graph-theoretical Analysis Toolkit19.93%
  663STAPLE19.79%
  664Efficient Permutation Testing19.75%
  665NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.61%
  666GAMMA19.58%
  667Generalized Covariance Analysis (gCVA)19.49%
  668MOCA19.29%
  669imcalc: SPM batch image calulator19.19%
  670INIA19 Primate Brain Atlas19.18%
  671Fusion ICA Toolbox (FIT)19.13%
  672ALVIN - Lateral Ventricle Segmentation18.88%
  673NIRx2nirs: A NIRx to .nirs data converter18.86%
  674Hitachi2nirs18.78%
  675Connectome Workbench18.78%
  676Randomized Denoising Autoencoders for Neuroimaging18.77%
  677FIV18.50%
  678Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.50%
  679DW-MRI Random Walk Simulator18.48%
  680AURA tools : AUtomated Retinal Analysis tools18.37%
  681Displacement Field Viewer18.37%
  682Landman NeuroImaging Tools18.17%
  683BrainNetworkConstructionAnalysisPlatform18.14%
  684Penn Hippocampus Atlas18.07%
  685UManitoba-JHU Functionally-Defined Human White Matter Atlas18.05%
  686Resource Ontology Discussion Group17.90%
  687NVM17.79%
  688SINOMO (SIngular NOde MOtifs)17.61%
  689MouseBIRN Atlasing Toolkit (MBAT)17.55%
  690CMFreg17.54%
  691Ultra-high field atlas for DBS planning17.50%
  692AtlasConstructionToolkit17.28%
  693MeshGen - Surface meshes from volumetric segmentation data17.25%
  694fMRI Classification in R17.15%
  695CBICA: WMLS (White Matter Lesion Segmentation)17.15%
  696SPM_SS - fMRI functional localizers16.95%
  697Diffusion MRI Tool16.72%
  698BCILAB16.70%
  699Brain Segmentation Testing Protocol16.69%
  700Automated Image Registration (AIR)16.65%
  701resting-state pediatric imaging template16.48%
  702XFSL: An FSL toolbox16.45%
  703Single-index Varying Coefficient Model for Functional Responses16.45%
  704MIAS Registration Toolkit16.33%
  705ValMap: simple statistical mapping tool15.79%
  706CoCoMac-Paxinos3D viewer15.74%
  707Jim15.71%
  708Wavelet-based Image Fusion15.70%
  709Segmentation Validation Engine15.51%
  710vis: SPM Visualized Statistics toolbox15.48%
  711NeuroLens15.43%
  712MGDM: Multi Geometric Deformable Model15.32%
  713TractoR: Tractography with R15.29%
  714IDeA Lab brain image processing suite15.25%
  715DIAMOND15.11%
  716Internet Brain Volume Database (IBVD)15.07%
  717NIRS-SPM14.98%
  718Using Make for Neuroimaging Workflow: Manual and Examples14.91%
  719CBICA: COMPARE14.67%
  720DICCCOL predictor (v0.1)14.60%
  721CamBA14.49%
  722Measure Projection Toolbox (MPT)14.34%
  723Brainwaver14.31%
  724Serotonin Transporter HighResolution PET Template14.31%
  725MRI Neuroanatomy Labeling Services14.23%
  726Level-set Segmentation for Slicer314.13%
  727Subject Library14.04%
  728LONI De-identification Debablet14.00%
  729Cluster Extent Correction13.99%
  730The Brain Coactivation Map13.97%
  731Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI13.72%
  732BrainDecoderToolbox13.51%
  733NeuroPub Visualizer13.47%
  734Kymata Atlas13.43%
  735Microstructural correlation toolbox13.41%
  736BrainFX13.32%
  737Pythagorean Displacement and Motion Regressors13.17%
  738mach2dat13.14%
  739VarTbx – Variability Toolbox13.06%
  740Wisconsin Cortical Thickness Analysis (CTA) Toolbox12.89%
  741N3 - MINC B0 nonuniformity correction12.85%
  742gCCA12.82%
  743mach2qtl12.72%
  744BrainVision Analyzer12.56%
  745SVV12.48%
  746fanDTasia Java Applet: DT-MRI Processing12.42%
  747Brainvox12.36%
  748MouseTracker12.01%
  749M311.92%
  750MEG Tools11.74%
  751Caret11.02%
  752INCF11.00%
  753MaCH10.86%
  754Rodent Brain Extraction Tool10.85%
  755UNC Primate Brain Atlas10.79%
  756ShapeComplexAtlas10.08%
  757CDF-HC PointSetReg10.02%
  758MaCH-Admix9.549%
  759Distributome9.086%