Most Active This Week | Most Active All Time

Most Active All Time
(Updated Daily)

Below is a list of the most active tools and resources within NITRC. Activity is measured through submitted forum messages, bugs, patches, supports, tasks, cvs commits, and file releases and through the number of members and downloads. The tools and resources are ordered by the average monthly activity percentile over the life of NITRC.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

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Rank Tool/Resource Name Percentile
  1MRIcron97.73%
  21000 Functional Connectomes Project97.09%
  3ITK-SNAP95.88%
  4BSMac: Bayesian Spatial Model for Brain Activation and Connectivity95.20%
  5CBICA: GLioma Image SegmenTation and Registration (GLISTR)93.50%
  6MRIcroGL92.84%
  7rapidtide92.34%
  8Rosetta Bit90.88%
  9DTI-TK90.31%
  10Functional Mixed Processes Models89.05%
  11PANDA: a pipeline tool for diffusion MRI88.47%
  12Multi-Modal MRI Reproducibility Resource88.25%
  13MPScope88.22%
  14HippocampalUnfolding_ManualInitialization87.71%
  15BrainNet Viewer87.30%
  16Open Vanderbilt Archive of the Temporal Lobe87.11%
  17CONN : functional connectivity toolbox86.25%
  18TOADS-CRUISE Brain Segmentation Tools85.26%
  19Cavernous Hemangioma: Epilepsy & ADD84.87%
  20p-[(123)I]iodo-L-phenylalanine (IPA)-SPECT template in MNI-coordinates84.84%
  21CBICA: PREDICT84.68%
  22Kurtosis Imaging Network - KIN84.52%
  23CBICA: Brain Tumor Modeling - Coupled Solver84.40%
  24ITools Resourceome84.16%
  25Hadoop for data colocation84.04%
  26CBICA: Brain Anatomy Simulator83.98%
  27JIST: Java Image Science Toolkit83.94%
  28Functional Imaging BIRN83.87%
  29Local Label Learning (LLL) Segmentation83.13%
  30HD Neuro-Informatics83.02%
  31Infant Macaque MRI And DTI Templates82.26%
  32Lumina LP- 400 Response System82.21%
  33Philips Users Community82.17%
  34Brainstem Connectome Atlas82.03%
  35HERMES81.06%
  36NUTMEG80.78%
  37Vaa3D and Vaa3D-Neuron80.77%
  38ODIN80.52%
  39Stochastic Tractography System80.43%
  40Solar Eclipse Imaging Genetics tools80.09%
  41NeuroDebian79.98%
  42Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)79.91%
  43fMRIstat79.79%
  44Bayesian longitudinal low-rank regression79.68%
  45map3d79.67%
  46Turbo-BrainVoyager79.64%
  47WFU_PickAtlas79.16%
  48MITK Diffusion79.01%
  49DSI Studio79.00%
  50MASIMatlab78.83%
  51Seg3D78.68%
  52Ogles - OpenGL/OIV Stereotactic Tool78.64%
  53Umeå Brain Arteries78.64%
  54iView X MRI-LR - Eye Tracking for fMRI78.64%
  55L-Neuron78.49%
  563T DWI test-retest reliability dataset78.49%
  57XCEDE Schema78.35%
  58BioSig78.08%
  59NITRC Image Repository (NITRC-IR)78.00%
  60Curry 777.81%
  61GazeReader77.81%
  62Functional ROI Atlas77.78%
  63BluePyOpt77.70%
  64SurfStat77.60%
  65CBRAIN77.49%
  66GPU based affine registration77.46%
  67FieldTrip77.34%
  68GIFTI77.24%
  69VALiDATe29 squirrel monkey brain atlas77.21%
  70XNBC77.14%
  71CBICA: Chimera77.05%
  72Brede Toolbox77.01%
  73EEG Toolbox76.93%
  74dcm2nii76.90%
  75HCP Harvard/MGH-UCLA76.85%
  76EEProbe76.84%
  77epi-example-dicom76.63%
  78E-Prime Extensions for fMRI76.62%
  79NIMH Data Archive / National Database for Autism Research76.52%
  80TurtleSeg76.48%
  81MindSeer76.42%
  82COINS76.26%
  83EONS76.25%
  84Insight Toolkit76.17%
  85Spatial Analysis 3D76.15%
  86ASA - Advanced Source Analysis76.11%
  87NIPY Diffusion Imaging Analysis76.10%
  88Brain Products' EEG/fMRI Hardware76.05%
  89Cytoseg75.83%
  90HCP WU-Minn Consortium75.77%
  91In vivo MEMRI-based Rat Brain Atlas75.71%
  92NICE-SIGN75.68%
  93MNI Macaque Atlases75.65%
  94GesTr75.60%
  95cmrep75.59%
  96ParaView75.52%
  97PRoNTo – Pattern Recognition for Neuroimaging Toolbox75.46%
  98Framework for Open Programmatic Access75.38%
  99LIBEEP75.38%
  100Nilearn75.23%
  101NIPY File IO75.18%
  102Micro-Manager75.17%
  103CBICA: PORTR75.13%
  104A robust method for correcting partial volume effect in ASL data75.12%
  105Generalized PPI Toolbox75.07%
  106NFT: Neuroelectromag Forward Modeling75.04%
  107CBICA: ODVBA74.97%
  108Brainsight74.90%
  109Faceted Search Based Ontology Visualizer74.89%
  110INCF Neuroimaging Data Sharing74.89%
  111Net Station74.81%
  112UCLA Multimodal Connectivity Database74.77%
  113FASST – fMRI Artefact rejection and Sleep Scoring Toolbox74.77%
  114brainCOLOR: human brain anatomical labeling protocols and colormaps74.73%
  115EEGVIS74.66%
  116ProbabilisticBiasCorrection74.60%
  117I/OWA 374.57%
  118dtiBrainScope74.54%
  119DICOM_UploadGUI74.52%
  120Connectome File Format (CFF)74.48%
  121APERTURE74.44%
  122Bisque74.41%
  123BrainLiner.jp74.34%
  124Advanced Normalization Tools74.32%
  125nitime74.27%
  126INVIZIAN74.26%
  127Anatomist74.21%
  128Surf Ice74.19%
  129NordicNeuroLab74.14%
  130XCEDE Schema74.09%
  131Presentation74.05%
  132connectir74.03%
  133NC-IGT Fast Imaging Library74.00%
  134Age Related Atrophy Dataset74.00%
  135ERPLAB73.92%
  136VIEWPixx73.91%
  137CANDI Share: Schizophrenia Bulletin 200873.91%
  138Triangle BioSystems73.89%
  139BrainMaps.org73.86%
  140Pydicom73.82%
  141The fMRI Data Center73.82%
  142Network-Based Statistic (NBS)73.78%
  143PySurfer73.76%
  144NITRC Community73.73%
  145fMRI-CPCA73.70%
  146Statistics Online Computational Resource73.45%
  147TARQUIN MRS analysis package73.40%
  148NIRx NIRS Neuroimaging73.39%
  149PyNIfTI73.36%
  150COGNISION (TM) System73.25%
  151Neuroimaging Made Easy Blog73.24%
  152OpenElectrophy73.22%
  153NIPY Community73.20%
  154PVS_Enhance72.99%
  155NeuroScope72.95%
  156ASL data processing tool box72.94%
  157MagPro Magnetic Stimulator (TMS)72.94%
  158XNAT Extras72.91%
  159MINC - Medical Image NetCDF72.90%
  160Lipsia72.87%
  161MedINRIA72.87%
  162NIH Marmoset Brain Atlas72.86%
  163Mouse Connectome Project (MCP)72.79%
  164Fiber Tracking Tool72.78%
  165Fiber-tracking based on Finsler distance72.78%
  166SumsDB Database72.73%
  167Celeritas: Fiber Optic Response System72.72%
  168Waxholm Space Atlas of the Sprague Dawley Rat Brain72.71%
  169CUDA accelerated spherical model M/EEG72.66%
  170False Discovery Rate Weighted72.64%
  171DATAPixx72.63%
  172OpenFMRI72.62%
  173DONE: Detection of Outlier NEurons72.55%
  174ArtRepair for robust fMRI72.45%
  175WhiteText - annotated neuroscience text72.44%
  176NIPY Structural and Functional Analysis72.36%
  177CLEAVE: Large Data Set ANOVA72.21%
  178scikit-learn72.17%
  179Mag Design and Engineering72.10%
  180Working Memory Trainer72.06%
  181PPMI72.00%
  182BioImage Suite71.95%
  183SFMProject71.92%
  184vuTools71.88%
  185Hitachi Optical Topography System71.88%
  186BRAINSConstellationDetector71.85%
  187Computational Morphometry Toolkit (CMTK)71.80%
  188Hyperion: MRI Digital Projection System71.59%
  189ShapeViewer71.52%
  190Normative Independent Component Analysis71.48%
  191LDDMM71.43%
  192fNIR Devices71.38%
  193OpenMEEG71.38%
  194TORTOISE71.25%
  195NeuroElf71.23%
  196ADNI71.16%
  1974D-PARSeR (Pathological Anatomy Regression via Segmentation and Registration)71.10%
  198COST71.02%
  199NeuroSynth70.83%
  200Viking Viewer for Connectomics70.74%
  201GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity70.70%
  202SR Research EyeLink Eye Trackers70.67%
  203LONI Provenance Editor70.63%
  204CoCoMac Brain Connectivity Database70.62%
  205MazeSuite70.54%
  206BrainBrowser70.49%
  207Pipeline Neuroimaging VirtualEnvironment70.41%
  208Homer270.39%
  209Biomedical Informatics Research Network70.34%
  210Fine Relational Spatial Topology70.15%
  211BrainVisa Morphologist extensions70.13%
  212Open Connectome Project70.04%
  213REST: a toolkit for resting-state fMRI69.97%
  214OEI fMRI compatible olfactometer69.96%
  215Data Format Tools69.88%
  216Journals69.76%
  217Fast Fourier Transform (FFT) JavaLibrary69.75%
  218Laboratory of Neuro Imaging (LONI)69.74%
  219IMOD - 3D Reconstruction and Analysis69.72%
  220Primatologist69.64%
  221Source Information Flow Toolbox69.60%
  222CBICA: Confetti69.57%
  223EEGLAB69.56%
  224CBICA: WhiteStripe69.48%
  225Mouse BIRN69.44%
  226BrainGraph Editor 1.0 Beta69.44%
  227UNC 0-1-2 Infant Atlases69.42%
  228ENIGMA-DTI pipeline69.35%
  229LIMO EEG69.17%
  230Center for Computational Biology (CCB)69.15%
  231PICASSO skull stripping tool69.01%
  232FADTTSter68.99%
  233The Neuro Bureau68.95%
  234Synchronized Histological Image View Arc68.86%
  235cbiNifti: Matlab/Octave Nifti library68.82%
  236Analyze68.78%
  237DPARSF68.68%
  238Textpresso - literature search engine68.67%
  239SMAC: Spatial Multi-category Angle-based Classifier68.62%
  240E-Prime68.58%
  241MRI Simulator68.50%
  242BrainMap Database68.23%
  243PsychoPy68.14%
  244CIVILITY : Cloub based Interactive Visualization of Tractography Brain Connectome68.10%
  245Grantees Meeting for NITRC68.08%
  246Create DWI Atlas67.98%
  247UNC/Utah NAMIC DTI Fiber Analysis Framework67.77%
  248BrainMagix SPM Viewer67.70%
  249BioMesh3D67.70%
  250IIT Human Brain Atlas (v.4.1)67.70%
  251Multiscale Weighted Principal Component Regression67.66%
  252NeuroWeb - NeuroImaging Database67.63%
  253NeuriteTracer67.45%
  254MultiTracer version 267.40%
  255dinifti67.32%
  256Challenge Competitions Collection67.26%
  257Low Resolution Brain Electromagnetic Tomography67.25%
  258Seed-based d Mapping (SDM, formerly Signed Differential Mapping)67.21%
  259N2A67.19%
  260Brede Wiki67.00%
  261BrainVISA66.94%
  262SCIRun66.94%
  263Spatially Constrained Parcellation66.87%
  264Mango66.86%
  265Rockland Download Link Script66.78%
  266MEGSIM66.69%
  267UNC-Wisconsin Neurodevelopment Rhesus MRI Database66.64%
  268NIPY Pipeline and Interfaces66.47%
  269CAMINO-TRACKVIS66.47%
  270HDBIG66.40%
  271ImageVis3D66.18%
  2723D Slicer66.10%
  273fNIRS Data Analysis Environment65.98%
  274SPM for fNIRS toolbox65.71%
  275Books65.58%
  276Group Level Imputation of Statistic Maps65.49%
  277Connectome Viewer65.38%
  278SCRalyze65.38%
  279ShapeTools65.31%
  280MRBrainS Evaluation Framework / Challenge65.15%
  281ExPosition Packages65.09%
  282MRI_CVPR65.08%
  283NIREP64.96%
  284BrainMask Volume Processing Tool64.95%
  285University of Illinois Cognitive Neuroimaging Laboratory Optical Brain Imaging Software64.84%
  286Parkinson's Disease Discovery Database64.60%
  287Longitudinal neuroimaging hippocampal markers for diagnosing Alzheimer's disease64.48%
  288NCANDA: Data Integration Component64.28%
  289Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain64.21%
  290Diffusion Warp64.08%
  291Prospective Acquisition CorrEction (PACE) Resting State EPI data63.87%
  292Anima63.87%
  293Diffusion Toolkit / TrackVis63.77%
  294Non-rigid groupwise registration method63.75%
  295SpiCoDyn63.70%
  296Web Interfaces for Multiscale Images63.57%
  297MarsBaR region of interest toolbox63.54%
  298MARS (Multi-Atlas Robust Segmentation)63.53%
  299Augmented Reality Mirror63.52%
  300Temporal-lobe.com63.32%
  301NeoSegPipeline63.20%
  302Brain Entropy in space and time (BEst)63.14%
  303FSL extensions63.14%
  304fNIRS Research Database63.14%
  305Medical Image Visualization and Analysis63.06%
  306AFNI63.05%
  307HFH_DTI_DATA62.93%
  308Hammer And WML Modules for 3D Slicer62.84%
  309Neuroimaging Data Access Group62.68%
  310GRETNA62.58%
  311The Cognitive Atlas62.43%
  312CBICA: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters (MUSE)62.31%
  313CBICA: Datasets62.21%
  314Tractography based on Riemannian geodesics and tensor adjugates62.21%
  315IBSR62.04%
  316PatternRecog_GAM_SparityRegression61.94%
  317DT_BOLD_calc61.89%
  318Mindboggle-101 manually labeled brains61.81%
  319Monte Carlo Simulation Software: tMCimg61.67%
  320Neural ElectroMagnetic Ontologies61.65%
  321PubBrain Database61.64%
  322MoTrak: Head Motion Tracking System61.63%
  323Rodent Cortical Thickness Analysis61.39%
  324CBICA: PHI Estimator61.34%
  325CIGAL61.11%
  326Talairach Daemon60.98%
  327Mesh-based Monte Carlo (MMC)60.92%
  328MRI denoising60.63%
  329CBICA: MOE60.58%
  330Neuroinformatics - The Journal60.36%
  331NeuroImaging Analysis Kit (NIAK)60.31%
  332Automatic Registration Toolbox60.28%
  333CBICA: DTIDROID60.27%
  334mask_explorer60.23%
  335CBICA: GONDOLA60.17%
  336Monte Carlo eXtreme (MCX)60.16%
  337IATR60.11%
  338MRtrix59.93%
  339The EBDS Infant DTI Fiber Atlases59.86%
  340Cerebral Blood Flow Database and Analysis Pipeline (CBFDAP)59.65%
  341Neoseg59.61%
  342iso2mesh59.41%
  3432008 MICCAI MS Lesion Segmentation Challenge59.23%
  344Functional Connectivity Community59.20%
  345BRAINSSurfaceStats59.18%
  346Progression Score Model Toolkit59.14%
  347TAPIR58.98%
  348Statistical Methods for Manifold-valued Data58.97%
  349Human Imaging Database (HID)58.82%
  350NIRAL Utilities58.71%
  351SPHARM-PDM Toolbox58.52%
  352QModeling58.20%
  353Scalable Brain Atlas58.15%
  354Disease State Prediction58.15%
  355Stereoscopic Atlas of Intrinsic Brain Networks (SAIBN)57.98%
  356pyxnat57.94%
  357Combining a patch-based approach with a non-rigid registration-based label fusion method for the hippocampal segmentation57.94%
  358BraTumIA (Brain Tumor Image Analysis)57.66%
  359Denoising of redundant MR series57.35%
  360FSL57.15%
  361BiofilmQuant57.09%
  362NITRC Computational Environment (NITRC-CE)57.07%
  363BRAINSTools57.00%
  364BrainVoyager56.89%
  365ConWhAt - A library for Connectome-Based White Matter Atlas analysis56.87%
  3663DSlicerLupusLesionModule56.20%
  367VectorValuedHistogramNormalizer55.65%
  368AutoTract55.51%
  369ReproNim: A Center for Reproducible Neuroimaging Computation55.40%
  370Center for Functional Neuroimaging Tech55.37%
  371Spinal Cord Toolbox55.13%
  372International Imaging Genetics Conference54.88%
  373CWL EEG fMRI Data Set54.50%
  374Draw3D and Meshinator54.46%
  375Diffusional Kurtosis Estimator54.29%
  376DTIProcess ToolKit54.23%
  377Group ICA Toolbox (GIFT and EEGIFT)54.23%
  378TumorSim53.91%
  379DTI Connectome Pipeline53.76%
  380VMTK in 3D Slicer53.66%
  381Artifact Detection Tools (ART)53.43%
  382Mayo Clinic Adult Lifespan Template and Atlases53.20%
  383UNC 4D Infant Cortical Surface Atlas53.13%
  384NeuroshareLibrary53.07%
  385Subject Order-Independent Group ICA53.02%
  386MCIC- schizophrenic and matched control data53.00%
  387NIfTI52.95%
  3883d Brain Atlas Reconstructor52.90%
  389CBS High-Res Brain Processing Tools52.81%
  390C-PAC52.38%
  391ANTsR52.31%
  392CBICA: Cancer Imaging Phenomics Toolkit (CaPTk)52.29%
  393STAMP Atlases for Brain Abnormality Detection52.19%
  394SpineSegmentation module for 3DSlicer51.99%
  395EEG human categorization data51.96%
  396BrainVoyager Brain Tutor51.73%
  397fMRI Results Comparison Library51.64%
  398Parallel Stochastic Ion Channel Simulator51.43%
  399NYU CSC TestRetest51.40%
  400Licensing51.27%
  401MRI Defacer51.06%
  402VANDPIRE50.79%
  403Nighres50.77%
  404BRAINSMush50.66%
  405A probabilistic subcortical atlas for PD50.62%
  406factory_t1_dti50.47%
  407Lightweight Data Pipeline50.41%
  408LONI Pipeline Environment50.19%
  409shapeAnalysisMANCOVA - SPHARM tools49.87%
  410TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA49.82%
  411nonfractal49.78%
  412ABSORB for groupwise registration49.68%
  413NODDI Matlab Toolbox49.65%
  414Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations49.57%
  415CANDI Neuroimaging Access Point49.53%
  416ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data49.52%
  417Simple Medical Imaging Library Interface (SMILI)49.34%
  418Framewise Integrated Real-time MRI Monitoring49.18%
  419Gibbsconnectome49.15%
  420MISST - Microstructure Imaging Sequence Simulation ToolBox49.10%
  421Multiple Correlation Function Tool48.96%
  422Epsilon Radial Networks48.81%
  423Northwestern University Schizophrenia Data and Software Tool (NUSDAST)48.70%
  424Single-subject Resting state fMRI Reproducibility Resource48.58%
  425GLMdenoise: a fast, automated technique for denoising task-based fMRI data48.57%
  426SIVIC48.42%
  427Maps4Mipav (Exploratory JIST) 48.35%
  428A 3T probabilistic Locus Coeruleus atlas48.28%
  429Conferences, Workshops and Meetings48.24%
  430PREDiCT48.15%
  431DWI/DTI Quality Control Tool: DTIPrep47.92%
  432BXH/XCEDE Tools47.85%
  433Group Sparse Canonical Correlation Analysis47.84%
  434ANIMA47.79%
  435UNC CEDARS INFANT ATLAS47.68%
  436Pipeline system for Octave and Matlab47.66%
  437GenGen47.52%
  438Waxholm Space Atlas of the C57BL/6J Mouse Brain47.43%
  439BRAINSFit47.32%
  440BrainSuite47.32%
  441Graph Theory GLM (GTG) MATLAB Toolbox47.30%
  442The Cancer Imaging Archive (TCIA)47.14%
  443isc-toolbox: Inter-subject correlation analysis for fMRI in Matlab47.14%
  444Visually Evoked Potential EEG46.88%
  445Mixed Effect Model of Genetic-Set and Environment Interaction46.67%
  446MRI Dataset for Hippocampus Segmentation46.59%
  447Local Manifold Learning for Multi-atlas segmentation46.38%
  448SchizConnect: Large-Scale Schizophrenia Neuroimaging Data Mediation & Federation46.26%
  449Task Independent Fluctuations Discussion46.17%
  450Robust Brain Extraction (ROBEX)46.02%
  451GIMME (Group Iterative Multiple Model Estimation)45.91%
  452NPBayes-fMRI45.72%
  453Diffusion MRI @ DKFZ Heidelberg45.52%
  454FBIRN Image Processing Scripts (FIPS)45.50%
  455BetA-Series COrrelation45.28%
  456MultiXplore: Visual Exploration Platform for Multimodal Neuroimaging Data45.11%
  457Statistical Methods for Heterogeneous Neuroimaging Data45.03%
  458Generation R Pediatric MRI Resources44.99%
  459Vervet Probabilistic Atlas44.95%
  460Best Practices for Software Development44.91%
  461PESTICA & SLOMOCO: physio and motion correction tools44.88%
  462FreeSurfer44.85%
  463Spanish Resting State Network44.84%
  464ENIGMA-Viewer: Visualizing Effect Sizes in Meta-Analysis44.78%
  465ATPP: Automatic Tractography-based Parcellation Pipeline44.63%
  466NeuroImage Field-of-View Normalization Tool44.45%
  467Bayesian Connectivity Analysis software (BCA)44.44%
  468Imeka Tractography Service44.35%
  469Brain Connectivity Toolbox43.82%
  470EEG Study data of Rapid Serial Visual Presentation (RSVP) in ESS format43.71%
  471FMRIpower43.70%
  472In vivo MEMRI-based Mouse Brain Atlas43.68%
  473Optseq - fMRI Event Scheduler43.67%
  474Preprocessed Connectomes Project43.46%
  475QCQP43.44%
  476Human Connectome Project (HCP)43.41%
  477Multicomponent T2 estimation with stimulated echo correction43.38%
  478SRI24 Atlas: Normal Adult Brain Anatomy43.23%
  479Advanced Connectivity Analysis (ACA): a large scale functional connectivity data mining environment42.97%
  480Atlasing of the basal ganglia42.94%
  481MATLAB Tutorial on Diffusion Tensor MRI42.84%
  482iBEAT42.78%
  483Wisconsin White Matter Hyperintensities Segmentation Toolbox42.70%
  484The Grid Code Analysis Toolbox (GridCAT)42.53%
  485BRAINSROIAuto42.50%
  486Graphtools42.47%
  487NIDB - Neuroinformatics Database42.27%
  488SPM42.25%
  489Phoneme-Syllable Tsinghua University CS&T 201142.19%
  490age-ility42.13%
  491ShapeComplexityIndex41.87%
  492YMDTI: Diffusion Tensor Images of Healthy Young Males41.39%
  493Brainance DTI Module41.33%
  494REX41.24%
  495MONSTR Multi Contrast Brain Stripping41.17%
  496Cluster reporter41.03%
  497NTU-DSI-122: A Diffusion Spectrum Imaging Template with High Anatomical Matching to the ICBM-152 Space41.00%
  498Local Binary Pattern Analysis Tools for MR Brain Images40.94%
  499ABC (Atlas Based Classification)40.93%
  500Neurolucida40.86%
  501CBFBIRN40.45%
  502HAMMER: Deformable Registration40.40%
  503Stereo Investigator40.09%
  504Brainnetome fMRI toolkit40.01%
  505Brain Hierarchical Atlas: A brain atlas where the regions of interest are relevant for both structure and function39.89%
  506S-rep Fitting, Statistics, and Segmentation39.76%
  507PhysIO Toolbox39.44%
  508POS2SPM39.14%
  509SLIC: a whole brain parcellation toolbox38.88%
  5107T Structural MRI scans ATAG38.87%
  511SegEditing38.76%
  512DTI-TEMPLATE-RHESUS-MACAQUES38.61%
  513Quantitative Diffusion Tools38.58%
  514FiberViewerLight38.56%
  515AHEAD38.48%
  516Brainnetome DiffusionKit38.32%
  517Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)38.24%
  518XNAT37.88%
  519A Shimadzu to .nirs data converter37.63%
  520VAMCA Cortical Meta-analysis Toolbox37.53%
  521Segmentation-based Multimodal Rigid Image Registration37.49%
  522Functional Analysis of Diffusion Tensor37.41%
  523Fast Nonlocal Means for MRI denoising37.33%
  524LONI Debabeler37.29%
  525PD RS-fMRI meta and validation36.81%
  526CBICA: Multi Atlas Skull Stripping (MASS)36.66%
  527CutNII - Custom-angle slicer for brain atlas volumes36.41%
  528BrainCSI36.36%
  529masked ICA (mICA) Toolbox36.36%
  530GLIRT35.79%
  531DTI Atlas Builder35.73%
  532Tissue Thickness Estimation via Minimum Line Integrals35.52%
  533Unbiased Atlas Construction via Population (group-wise) DRAMMS Registration35.09%
  534Fast Lesion Extraction using Convolutional Neural Networks34.93%
  535RapidArt34.88%
  536JIP fMRI Analysis Toolkit34.76%
  537JIST Resources for Algorithm Development34.74%
  538AutoSeg34.69%
  539DTI-Reg34.50%
  540CIFTI Connectivity File Format34.40%
  541GTRACT34.29%
  542Emory-UNC Developmental Macaque Structural and DTI Atlases34.06%
  543Task-based fMRI atlases34.04%
  544Stark Cross-Sectional Aging33.84%
  545cPPI Toolbox for fMRI33.81%
  546Arterial Territories of the Neonatal Brain: automated classification33.75%
  547Clinical Toolbox for SPM33.71%
  548DicomBrowser33.67%
  549AMILab33.61%
  550MRIcroS33.43%
  551MABMIS: Multi-Atlas Based Segmentation33.27%
  552PyMVPA33.13%
  553BrainSolution33.12%
  554Brainscape32.79%
  555DRAMMS Deformable Image Registration Toolbox32.75%
  556MriWatcher32.69%
  557ICA Components from Kessler, et al, JAMA Psychiatry 201632.68%
  558CBICA: Tutorials (Image Processing and Machine Learning) using CPP, ITK, etc.32.56%
  559UNC detail-preserved longitudinal 0-3-6-9-12 months-old atlas32.38%
  560DTI denoising32.30%
  561ADJUST - EEG Automatic Artifact Removal31.83%
  562High-quality diffusion-weighted imaging of Parkinson's disease31.71%
  563ENIGMA resting state fMRI processing pipeline31.41%
  5643-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain In Postnatal Day 5, 14, and Adulthood31.41%
  565ASHS: Automatic Segmentation of Hippocampal Subfields31.37%
  566Computational Anatomy Toolbox - CAT31.21%
  567Image Synthesis31.20%
  568Cerebellar White Matter Atlas31.02%
  569ShapeWorks31.01%
  570Diffusion Tractography with Kalman Filter30.92%
  571Haiko89: MRI in vivo Baboon Brain Templates Collection (Papio anubis)30.50%
  572Slicer3 Example Modules30.49%
  573GIMIAS30.39%
  574Multivariate General Linear Models (MGLM) on Riemannian Manifolds30.28%
  575Manually Labeled MRI Brain Scan Database30.25%
  576HAMMER Suite30.17%
  577The De-identification Toolbox - A data sharing tool for neuroimaging studies30.15%
  578MPI-Leipzig Mind-Brain-Body Dataset30.06%
  579BASH4RfMRI29.93%
  580Program for optimal design of blocked fMRI experiments29.83%
  581Templates for In vivo Mouse Brain29.83%
  582MENGA: Multimodal Environment for Neuroimaging and Genomic Analysis29.75%
  583NITRC GForge Extensions29.75%
  584Corpus Callosum Thickness Profile Analysis Pipeline29.74%
  585MRI Studio29.45%
  586DFBIdb29.33%
  587Functional Connectivity Analysis Tool for near-infrared spectroscopy data29.26%
  588SPIKECOR: fMRI tool for automated correction of head motion spikes29.22%
  589GAMBIT29.22%
  590NPTK29.09%
  591Paradigm29.00%
  592peak_nii28.81%
  593MRTool28.78%
  594NIH Pediatric MRI Data Repository28.56%
  595MIPAV28.55%
  596Group Information Guided ICA28.46%
  597Magnetic Resonance Angiography Atlas Dataset28.26%
  598NIH-CIDI Lung Segmentation Tool28.23%
  599UNC Human Brain Atlas28.15%
  600S3DL Sparse Dictionary Learning based MR Image and Lesion Segmentation28.10%
  601Mid-Space-Independent Deformable Image Registration28.03%
  602Numerical Fibre Generator (NFG)27.95%
  603MRI Brain Template and Atlas of the Mouse Lemur Primate Microcebus murinus27.73%
  604SkullStrippingToolkit27.67%
  605DICOMConvert27.64%
  606MIRCen Macaca fascicularis brain MRI segmentation dataset27.63%
  607PHYCAA+: adaptive physiological noise correction for BOLD fMRI27.46%
  608A label fusion using CRF27.43%
  609SPHARM-MAT27.02%
  610CleanLine27.00%
  611fMRI Grocer26.96%
  612MisterI26.85%
  613Brainnetome Atlas Viewer26.82%
  614Hierarchical Functional Networks in Resting State fMRI26.80%
  615R-package for adaptive DWI analysis26.79%
  616ShapePopulationViewer26.77%
  617HI-SPEED Software Packets26.63%
  618DW-MRI registration in FSL26.31%
  619Deformable Template Model for Brain Analysis26.20%
  620DTI Fiber Tract Statistics26.18%
  621eConnectome26.17%
  622Template Image Processing Library26.11%
  623Robust Biological Parametric Mapping25.88%
  624ARCTIC25.81%
  625Convert MNI coordinates to or from XYZ25.55%
  626C8: Corpus Callosum Computations25.54%
  627Brainstorm25.40%
  628BrainVoyager Viewer25.39%
  629BrainParser25.37%
  630MeshValmet: Validation Metric for Meshes25.21%
  631Multi-contrast and submillimetric 3-Tesla hippocampal subfield segmentation protocol and dataset (MNI-HISUB25)24.88%
  632HFH_DTI_TLE_TOOLS24.86%
  633Zebrafish heart segmentation24.86%
  634Gradient Non-linearity Unwarping Tool24.76%
  635INSTAR (Infant Joint Segmentation and Registration)24.71%
  636Simulated Diffusion-Weighted Datasets24.70%
  637LORIS24.52%
  638WFU_Pipeline24.33%
  639CCSeg - Corpus Callosum Segmentation24.32%
  640FVGWAS: Fast Voxelwise Genome Wide Association Analysis24.28%
  641Multi-fiber Reconstruction from DW-MRI24.16%
  642Finsler tractography module for Slicer24.11%
  6433T MRI data set on structural brain-behavior correlations24.05%
  6443DMeshMetric23.99%
  645MR Connectome Automated Pipeline (MRCAP)23.96%
  646MIView23.93%
  647Automatic Segmentation Tool Adapter23.73%
  648MNE - Minimum Norm Current Estimates23.49%
  649R-package for adaptive fMRI analysis23.46%
  650MABMIS for Slicer 4: Multi-Atlas Based Multi-Image Segmentation23.45%
  651GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data23.43%
  652Diffusion MRI - In-vivo and Phantom Data23.38%
  653WFU_BPM23.38%
  654TetraMetrix23.36%
  655Functional Regression Analysis of DTI23.20%
  656Morphometry BIRN23.14%
  657NiiStat23.08%
  658B0 and eddy current correction for DTI23.07%
  659ProCTSeg23.03%
  660Colin 3T/7T High-resolution Atlas22.99%
  661Dual-tree complex wavelet combined with non-local means for ASL fMRI denoising22.94%
  662RFT_FDR22.92%
  663MASI Label Fusion22.90%
  664SnPM22.86%
  665OASIS22.70%
  666Standard Amygdalar fMRI Probe Tasks22.67%
  667CBICA: Laboratory for Individualized Breast Radiodensity Assessment (LIBRA)22.39%
  668JHU Proj. in Applied Medical Imaging22.20%
  669aBEAT22.20%
  670HistoloZee - 3D histology reconstruction and co-registration with MRI22.07%
  671Inter-Group Registration Toolbox21.96%
  672Web Game for Collaborative Labeling21.93%
  673Corpus callosum and brain segmentations from ABIDE database21.92%
  674Notion ResearchPACS21.90%
  675Iterative dual-regression with sparse prior21.85%
  676Estimating Functional Brain Network based on Modularity Prior21.77%
  677POLGUI- Matlab GUI for Polhemus Fastrak 21.58%
  678LONI Inspector21.36%
  679Slicer3 Module Rician noise filter21.33%
  680UManitoba-JHU Functionally-Defined Human White Matter Atlas21.23%
  681Camino21.13%
  682Mindboggle: open source software for analyzing the shapes of brain structures from human MRI data21.10%
  683Spatial Statistical Parametric Mapping21.06%
  684PICSL Multi-Atlas Segmentation Tool21.03%
  685xjView, a viewing tool for SPM20.94%
  686DOTS WM tract segmentation20.90%
  687SOCK20.83%
  6884D Atlas Construction20.73%
  689BTK : Baby Brain Toolkit20.63%
  690volBrain: online MRI segmentation20.58%
  691MGH Neonatal/Pediatric ADC atlases20.54%
  692VoxBo20.50%
  693minc-toolkit20.36%
  694freesurfR20.36%
  695cortex20.36%
  696Elastic Net-based Parcellation (ENPA)20.25%
  697DentalTools20.18%
  698Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation20.12%
  699GAMMA19.81%
  700AURA tools : AUtomated Retinal Analysis tools19.65%
  701Ultra-high field atlas for DBS planning19.64%
  702Efficient Permutation Testing19.59%
  703Randomized Denoising Autoencoders for Neuroimaging19.56%
  704STAPLE19.52%
  705NIH-CIDI Segmentation of PET Images based on Affinity Propagation Clustering19.43%
  706imcalc: Batch image calulations and transformations (SPM5/8/12)19.36%
  707Generalized Covariance Analysis (gCVA)19.30%
  708Orientation Distribution Function in Constant Solid Angle (CSA-ODF) and Hough-Transform Tractography19.17%
  709Fusion ICA Toolbox (FIT)19.13%
  710NIRx2nirs: A NIRx to .nirs data converter18.94%
  711ALVIN - Lateral Ventricle Segmentation18.88%
  712INIA19 Primate Brain Atlas18.85%
  713Parallel Graph-theoretical Analysis Toolkit18.59%
  714Hitachi2nirs18.59%
  715Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.018.56%
  716FIV18.55%
  717A joint sparse partial correlation method for estimating group functional networks18.49%
  718ToolConnect18.42%
  719MOCA18.37%
  720Displacement Field Viewer18.02%
  721BrainNetworkConstructionAnalysisPlatform17.99%
  722DW-MRI Random Walk Simulator17.91%
  723Resource Ontology Discussion Group17.89%
  724Connectome Workbench17.84%
  725SINOMO (SIngular NOde MOtifs)17.80%
  726Landman NeuroImaging Tools17.76%
  727Penn Hippocampus Atlas17.69%
  728NVM17.60%
  729MouseBIRN Atlasing Toolkit (MBAT)17.55%
  730fMRI Classification in R17.26%
  731AtlasConstructionToolkit17.11%
  732CMFreg17.07%
  733SPM_SS - fMRI functional localizers17.02%
  734Brain Segmentation Testing Protocol16.89%
  735CBICA: WMLS (White Matter Lesion Segmentation)16.88%
  736Longitudinal Multiple Sclerosis Lesion Imaging Archive16.78%
  737BCILAB16.49%
  738resting-state pediatric imaging template16.48%
  739Automated Image Registration (AIR)16.45%
  740MIAS Registration Toolkit16.33%
  741Diffusion MRI Tool16.28%
  742Jim16.20%
  743NIRS-SPM15.90%
  744CoCoMac-Paxinos3D viewer15.74%
  745NeuroLens15.72%
  746XFSL: An FSL toolbox15.67%
  747ValMap: simple statistical mapping tool15.64%
  748Segmentation Validation Engine15.51%
  749Wavelet-based Image Fusion15.45%
  750MGDM: Multi Geometric Deformable Model15.32%
  751Internet Brain Volume Database (IBVD)15.27%
  752IDeA Lab brain image processing suite15.26%
  753DIAMOND15.23%
  754TractoR: Tractography with R15.18%
  755CBICA: COMPARE15.16%
  756DICCCOL predictor (v0.1)15.10%
  757vis: Visualized statistics toolbox (SPM5/8/12)14.99%
  758CamBA14.61%
  759Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI14.42%
  760Brainwaver14.32%
  761Single-index Varying Coefficient Model for Functional Responses14.31%
  762MeshGen - Surface meshes from volumetric segmentation data14.20%
  763Cluster Extent Correction14.17%
  764Measure Projection Toolbox (MPT)14.10%
  765Level-set Segmentation for Slicer314.10%
  766MRI Neuroanatomy Labeling Services14.05%
  767Subject Library14.04%
  768LONI De-identification Debablet13.75%
  769The Brain Coactivation Map13.66%
  770Serotonin Transporter HighResolution PET Template13.35%
  771NeuroPub Visualizer13.25%
  772BrainFX13.22%
  773Microstructural correlation toolbox13.21%
  774mach2dat13.08%
  775Kymata Atlas12.95%
  776Using Make for Neuroimaging Workflow: Manual and Examples12.88%
  777N3 - MINC B0 nonuniformity correction12.85%
  778gCCA12.81%
  779BrainDecoderToolbox12.76%
  780Pythagorean Displacement and Motion Regressors12.71%
  781BrainVision Analyzer12.63%
  782Wisconsin Cortical Thickness Analysis (CTA) Toolbox12.62%
  783VarTbx – Variability Toolbox12.55%
  784SVV12.37%
  785Brainvox12.36%
  786mach2qtl12.27%
  787fanDTasia Java Applet: DT-MRI Processing12.25%
  788M311.92%
  789MouseTracker11.91%
  790MEG Tools11.48%
  791Rodent Brain Extraction Tool11.45%
  792UNC Primate Brain Atlas11.11%
  793Caret11.10%
  794INCF10.90%
  795CDF-HC PointSetReg10.86%
  796MaCH10.11%
  797MaCH-Admix9.989%
  798ShapeComplexAtlas9.742%
  799Distributome9.235%