Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
947728
2
Nilearn
882589
3
BIDScoin
509659
4
ITK-SNAP
458858
5
FCP/INDI PRIVATE SITE
371854
6
IIT Human Brain Atlas (v.5.0)
210322
7
fMRI-CPCA
204680
8
MRIcroGL
197268
9
CONN : functional connectivity toolbox
188587
10
1000 Functional Connectomes Project
181914
11
BrainNet Viewer
111071
12
DTI-TK
95187
13
IBSR
80414
14
BioImage Suite
77165
15
BXH/XCEDE Tools
73884
16
Multi-Modal MRI Reproducibility Resource
73355
17
age-ility
71706
18
NIDB - Neuroinformatics Database
71624
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
66961
20
WFU_PickAtlas
65807
21
JIST: Java Image Science Toolkit
56960
22
Solar Eclipse Imaging Genetics tools
55894
23
BrainFlow
52839
24
The Neuro Bureau
49708
25
PANDA: a pipeline tool for diffusion MRI
49657
26
GIFTI
47653
27
Functional Imaging BIRN
44415
28
NITRC Computational Environment (NITRC-CE)
44317
29
3T DWI test-retest reliability dataset
43351
30
fNIRS Data Analysis Environment
40041
31
EEGLAB
40027
32
TOADS-CRUISE Brain Segmentation Tools
39712
33
FreeSurfer
37985
34
Generalized PPI Toolbox
36377
35
BrainMap Database
33920
36
Multimodal Visual Consciousness Study Dataset
33257
37
QuickNII - Serial section aligner to volumetric atlases
32561
38
Network-Based Statistic (NBS)
31394
39
MIITRA atlas
29563
40
UNC 0-1-2 Infant Atlases
29361
41
Homer2
27908
42
Brain Biomechanics Imaging Resources
26987
43
NeuroImaging Analysis Kit (NIAK)
26329
44
NeuroDebian
26217
45
Anima
25994
46
NYU CSC TestRetest
25592
47
BrainVisa Morphologist extensions
25337
48
TumorSim
23839
49
XNAT Extras
23505
50
DWI/DTI Quality Control Tool: DTIPrep
23415
51
Neuroimaging Made Easy Blog
21106
52
Graph Theory GLM (GTG) MATLAB Toolbox
21021
53
Melbourne Subcortex Atlas
20880
54
4D UNC Neonatal and Infant Cortical Surface Atlases
20090
55
CBS High-Res Brain Processing Tools
19732
56
Mango
19084
57
Data Format Tools
18346
58
Surf Ice
18260
59
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18160
60
MITK Diffusion
18136
61
Automatic Registration Toolbox
18115
62
Vaa3D and Vaa3D-Neuron
17993
63
SRI24 Atlas: Normal Adult Brain Anatomy
17788
64
Fast Nonlocal Means for MRI denoising
17697
65
BrainMask Volume Processing Tool
17345
66
GRETNA
17345
67
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
16950
68
CANDI Neuroimaging Access Point
16632
69
Group ICA Toolbox (GIFT and EEGIFT)
16578
70
Talairach Daemon
16476
71
SPHARM-PDM Toolbox
16440
72
Diffusion Toolkit / TrackVis
16161
73
3D Slicer
16082
74
Spatially Constrained Parcellation
15947
75
Subject Order-Independent Group ICA
15733
76
DCP：Diffusion Connectome Pipeline
15634
77
Freesurfer fsaverage
15518
78
3DSlicerLupusLesionModule
15455
79
Computational Morphometry Toolkit (CMTK)
15382
80
BrainSuite
15097
81
Awake Rat rsfMRI Database
14899
82
Human Imaging Database (HID)
14663
83
Hammer And WML Modules for 3D Slicer
13998
84
MRtrix
13941
85
Brainstorm
13835
86
SVNTest
13746
87
FSL
13640
88
ENIGMA-DTI pipeline
13598
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13467
90
ShapePopulationViewer
13259
91
dcm2nii
13162
92
MARS (Multi-Atlas Robust Segmentation)
13016
93
Artifact Detection Tools (ART)
12841
94
libminc - Medical Image NetCDF library
12827
95
Nighres
12005
96
BrainVISA
11780
97
NIfTI
11772
98
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11703
99
Task Independent Fluctuations Discussion
11599
100
SPM for fNIRS toolbox
11483