Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
Nilearn
1080575
2
MRIcron
1009332
3
BIDScoin
877823
4
ITK-SNAP
475849
5
FCP/INDI PRIVATE SITE
394801
6
IIT Human Brain Atlas (v.5.0)
236132
7
CONN : functional connectivity toolbox
220315
8
MRIcroGL
211262
9
fMRI-CPCA
209423
10
1000 Functional Connectomes Project
185232
11
BrainNet Viewer
128778
12
BXH/XCEDE Tools
107386
13
DTI-TK
98897
14
NIDB - Neuroinformatics Database
98370
15
age-ility
89127
16
IBSR
83917
17
BioImage Suite
83295
18
Multi-Modal MRI Reproducibility Resource
78350
19
Solar Eclipse Imaging Genetics tools
77684
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
77629
21
JIST: Java Image Science Toolkit
73525
22
BrainFlow
71259
23
WFU_PickAtlas
67159
24
GIFTI
58829
25
NITRC Computational Environment (NITRC-CE)
56478
26
PANDA: a pipeline tool for diffusion MRI
55311
27
The Neuro Bureau
52452
28
3T DWI test-retest reliability dataset
49880
29
Functional Imaging BIRN
49511
30
Multimodal Visual Consciousness Study Dataset
45372
31
TOADS-CRUISE Brain Segmentation Tools
43949
32
fNIRS Data Analysis Environment
42903
33
Generalized PPI Toolbox
42863
34
QuickNII - Serial section aligner to volumetric atlases
41016
35
EEGLAB
40100
36
BrainMap Database
38325
37
Network-Based Statistic (NBS)
38023
38
FreeSurfer
37994
39
MIITRA atlas
37058
40
NeuroImaging Analysis Kit (NIAK)
35168
41
Standard Amygdalar fMRI Probe Tasks
34654
42
UNC 0-1-2 Infant Atlases
34077
43
Brain Biomechanics Imaging Resources
33045
44
DWI/DTI Quality Control Tool: DTIPrep
31031
45
Graph Theory GLM (GTG) MATLAB Toolbox
30932
46
Homer2
30907
47
TumorSim
29732
48
NYU CSC TestRetest
28151
49
NeuroDebian
28130
50
CBS High-Res Brain Processing Tools
27985
51
Melbourne Subcortex Atlas
27678
52
BrainVisa Morphologist extensions
27578
53
Anima
27461
54
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
26152
55
XNAT Extras
26094
56
4D UNC Neonatal and Infant Cortical Surface Atlases
25243
57
SPHARM-PDM Toolbox
23933
58
Neuroimaging Made Easy Blog
23403
59
SRI24 Atlas: Normal Adult Brain Anatomy
21921
60
BrainMask Volume Processing Tool
21308
61
CANDI Neuroimaging Access Point
21173
62
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
20730
63
Data Format Tools
20260
64
Fast Nonlocal Means for MRI denoising
20241
65
Vaa3D and Vaa3D-Neuron
20061
66
Mango
19617
67
Surf Ice
19395
68
3DSlicerLupusLesionModule
19379
69
Group ICA Toolbox (GIFT and EEGIFT)
18981
70
Automatic Registration Toolbox
18951
71
ShapePopulationViewer
18922
72
MRtrix
18678
73
MITK Diffusion
18464
74
Awake Rat rsfMRI Database
18259
75
GRETNA
17815
76
ANDA
17800
77
Subject Order-Independent Group ICA
17702
78
Hammer And WML Modules for 3D Slicer
17557
79
Talairach Daemon
17529
80
DCP：Diffusion Connectome Pipeline
17102
81
Diffusion Toolkit / TrackVis
17007
82
Human Imaging Database (HID)
17002
83
Freesurfer fsaverage
16948
84
AutoSeg
16884
85
Spatially Constrained Parcellation
16735
86
ENIGMA-DTI pipeline
16634
87
BrainSuite
16631
88
Computational Morphometry Toolkit (CMTK)
16611
89
3D Slicer
16329
90
NeuroDOT
15642
91
Multi-site Frequency Drift MR Spectroscopy
15295
92
MARS (Multi-Atlas Robust Segmentation)
15293
93
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
15211
94
FSL
14673
95
ReproNim: A Center for Reproducible Neuroimaging Computation
14285
96
Artifact Detection Tools (ART)
13952
97
Brainstorm
13848
98
Maps4Mipav (Exploratory JIST)
13817
99
ABSORB for groupwise registration
13695
100
3DMeshMetric
13584