Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
949054
2
Nilearn
887291
3
BIDScoin
517548
4
ITK-SNAP
459392
5
FCP/INDI PRIVATE SITE
372481
6
IIT Human Brain Atlas (v.5.0)
210746
7
fMRI-CPCA
204873
8
MRIcroGL
197712
9
CONN : functional connectivity toolbox
189413
10
1000 Functional Connectomes Project
182054
11
BrainNet Viewer
111401
12
DTI-TK
95370
13
IBSR
80532
14
BioImage Suite
77369
15
BXH/XCEDE Tools
74573
16
Multi-Modal MRI Reproducibility Resource
73502
17
NIDB - Neuroinformatics Database
72279
18
age-ility
71851
19
Waxholm Space Atlas of the Sprague Dawley Rat Brain
67135
20
WFU_PickAtlas
65884
21
Solar Eclipse Imaging Genetics tools
57563
22
JIST: Java Image Science Toolkit
57271
23
BrainFlow
53371
24
PANDA: a pipeline tool for diffusion MRI
49739
25
The Neuro Bureau
49732
26
GIFTI
48676
27
NITRC Computational Environment (NITRC-CE)
44656
28
Functional Imaging BIRN
44527
29
3T DWI test-retest reliability dataset
43656
30
fNIRS Data Analysis Environment
40164
31
EEGLAB
40032
32
TOADS-CRUISE Brain Segmentation Tools
39774
33
FreeSurfer
37985
34
Generalized PPI Toolbox
36548
35
BrainMap Database
34281
36
Multimodal Visual Consciousness Study Dataset
33514
37
QuickNII - Serial section aligner to volumetric atlases
32942
38
Network-Based Statistic (NBS)
31631
39
MIITRA atlas
29636
40
UNC 0-1-2 Infant Atlases
29446
41
NeuroImaging Analysis Kit (NIAK)
28330
42
Homer2
27956
43
Brain Biomechanics Imaging Resources
27152
44
NeuroDebian
26267
45
Anima
26057
46
NYU CSC TestRetest
25656
47
BrainVisa Morphologist extensions
25413
48
TumorSim
24033
49
DWI/DTI Quality Control Tool: DTIPrep
23615
50
XNAT Extras
23568
51
Graph Theory GLM (GTG) MATLAB Toolbox
21180
52
Neuroimaging Made Easy Blog
21141
53
Melbourne Subcortex Atlas
20917
54
4D UNC Neonatal and Infant Cortical Surface Atlases
20194
55
CBS High-Res Brain Processing Tools
19797
56
Mango
19097
57
SPHARM-PDM Toolbox
18728
58
Data Format Tools
18380
59
Surf Ice
18290
60
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
18234
61
Automatic Registration Toolbox
18144
62
MITK Diffusion
18140
63
Vaa3D and Vaa3D-Neuron
18039
64
SRI24 Atlas: Normal Adult Brain Anatomy
17828
65
Fast Nonlocal Means for MRI denoising
17763
66
BrainMask Volume Processing Tool
17371
67
GRETNA
17363
68
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
17045
69
CANDI Neuroimaging Access Point
16755
70
Group ICA Toolbox (GIFT and EEGIFT)
16635
71
Talairach Daemon
16495
72
Diffusion Toolkit / TrackVis
16175
73
3D Slicer
16100
74
Spatially Constrained Parcellation
15961
75
Subject Order-Independent Group ICA
15781
76
DCP：Diffusion Connectome Pipeline
15678
77
Freesurfer fsaverage
15574
78
Computational Morphometry Toolkit (CMTK)
15485
79
3DSlicerLupusLesionModule
15479
80
BrainSuite
15133
81
Awake Rat rsfMRI Database
14975
82
Human Imaging Database (HID)
14702
83
Hammer And WML Modules for 3D Slicer
14030
84
MRtrix
13990
85
SVNTest
13874
86
Brainstorm
13836
87
ENIGMA-DTI pipeline
13658
88
FSL
13658
89
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13493
90
ShapePopulationViewer
13347
91
MARS (Multi-Atlas Robust Segmentation)
13204
92
dcm2nii
13167
93
Artifact Detection Tools (ART)
12855
94
libminc - Medical Image NetCDF library
12828
95
Nighres
12027
96
BrainVISA
11796
97
NIfTI
11796
98
AutoSeg
11717
99
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11709
100
Task Independent Fluctuations Discussion
11619