Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
940348
2
Nilearn
754055
3
ITK-SNAP
453800
4
BIDScoin
424083
5
FCP/INDI PRIVATE SITE
363722
6
IIT Human Brain Atlas (v.5.0)
202873
7
fMRI-CPCA
199108
8
MRIcroGL
193072
9
CONN : functional connectivity toolbox
183495
10
1000 Functional Connectomes Project
180949
11
BrainNet Viewer
107600
12
DTI-TK
93639
13
IBSR
79658
14
BioImage Suite
76031
15
Multi-Modal MRI Reproducibility Resource
71571
16
BXH/XCEDE Tools
68579
17
age-ility
68543
18
WFU_PickAtlas
65240
19
NIDB - Neuroinformatics Database
64873
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
57177
21
Solar Eclipse Imaging Genetics tools
52585
22
JIST: Java Image Science Toolkit
52136
23
The Neuro Bureau
48831
24
PANDA: a pipeline tool for diffusion MRI
48372
25
BrainFlow
47179
26
GIFTI
46323
27
3T DWI test-retest reliability dataset
41341
28
Functional Imaging BIRN
41069
29
NITRC Computational Environment (NITRC-CE)
40970
30
EEGLAB
39986
31
fNIRS Data Analysis Environment
39249
32
TOADS-CRUISE Brain Segmentation Tools
39097
33
FreeSurfer
37983
34
Generalized PPI Toolbox
35731
35
BrainMap Database
33161
36
Multimodal Visual Consciousness Study Dataset
29542
37
Network-Based Statistic (NBS)
29430
38
QuickNII - Serial section aligner to volumetric atlases
28594
39
Homer2
27501
40
UNC 0-1-2 Infant Atlases
26401
41
NeuroDebian
25690
42
Anima
25465
43
NYU CSC TestRetest
25323
44
Brain Biomechanics Imaging Resources
25044
45
BrainVisa Morphologist extensions
24724
46
XNAT Extras
22407
47
MIITRA atlas
19658
48
Neuroimaging Made Easy Blog
19581
49
Melbourne Subcortex Atlas
19553
50
Mango
18927
51
CBS High-Res Brain Processing Tools
18885
52
MITK Diffusion
18079
53
Data Format Tools
18007
54
Surf Ice
17974
55
4D UNC Neonatal and Infant Cortical Surface Atlases
17903
56
Automatic Registration Toolbox
17879
57
Vaa3D and Vaa3D-Neuron
17448
58
Fast Nonlocal Means for MRI denoising
17263
59
GRETNA
17157
60
SRI24 Atlas: Normal Adult Brain Anatomy
17069
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
16573
62
Group ICA Toolbox (GIFT and EEGIFT)
16125
63
CANDI Neuroimaging Access Point
16034
64
3D Slicer
15935
65
Diffusion Toolkit / TrackVis
15921
66
Talairach Daemon
15883
67
Spatially Constrained Parcellation
15719
68
BrainMask Volume Processing Tool
15586
69
DCP：Diffusion Connectome Pipeline
15320
70
Computational Morphometry Toolkit (CMTK)
15168
71
3DSlicerLupusLesionModule
14987
72
Freesurfer fsaverage
14968
73
DWI/DTI Quality Control Tool: DTIPrep
14663
74
BrainSuite
14632
75
Awake Rat rsfMRI Database
14130
76
TumorSim
14010
77
Subject Order-Independent Group ICA
13969
78
Human Imaging Database (HID)
13950
79
Brainstorm
13829
80
MRtrix
13763
81
Hammer And WML Modules for 3D Slicer
13481
82
NeuroImaging Analysis Kit (NIAK)
13441
83
FSL
13388
84
dcm2nii
13114
85
libminc - Medical Image NetCDF library
12809
86
ENIGMA-DTI pipeline
12796
87
Artifact Detection Tools (ART)
12637
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
12536
89
SVNTest
12196
90
BrainVISA
11665
91
SPHARM-PDM Toolbox
11430
92
NIfTI
11396
93
MARS (Multi-Atlas Robust Segmentation)
11366
94
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11364
95
Task Independent Fluctuations Discussion
11346
96
Graph Theory GLM (GTG) MATLAB Toolbox
11265
97
Diffusional Kurtosis Estimator
11182
98
2008 MICCAI MS Lesion Segmentation Challenge
11097
99
SPM for fNIRS toolbox
11048
100
NODDI Matlab Toolbox
10860