Below is a list of the tools and resources that have had files downloaded directly through NITRC. They are ranked in order starting with the tool/resource with file releases that have been downloaded the most.

You may click on the tool/resource name to get to the Summary page for that tool/resource.

View Other Top Categories

Rank
Tool/Resource name
Downloads
1
MRIcron
945862
2
Nilearn
854579
3
BIDScoin
473474
4
ITK-SNAP
456987
5
FCP/INDI PRIVATE SITE
369523
6
IIT Human Brain Atlas (v.5.0)
208475
7
fMRI-CPCA
203010
8
MRIcroGL
196234
9
CONN : functional connectivity toolbox
186775
10
1000 Functional Connectomes Project
181622
11
BrainNet Viewer
109938
12
DTI-TK
94854
13
IBSR
80319
14
BioImage Suite
76832
15
Multi-Modal MRI Reproducibility Resource
72892
16
BXH/XCEDE Tools
72298
17
age-ility
70953
18
NIDB - Neuroinformatics Database
69085
19
WFU_PickAtlas
65663
20
Waxholm Space Atlas of the Sprague Dawley Rat Brain
65423
21
JIST: Java Image Science Toolkit
55720
22
Solar Eclipse Imaging Genetics tools
55269
23
BrainFlow
50806
24
The Neuro Bureau
49430
25
PANDA: a pipeline tool for diffusion MRI
49067
26
GIFTI
47216
27
Functional Imaging BIRN
43991
28
NITRC Computational Environment (NITRC-CE)
43208
29
3T DWI test-retest reliability dataset
42577
30
EEGLAB
40014
31
fNIRS Data Analysis Environment
39801
32
TOADS-CRUISE Brain Segmentation Tools
39451
33
FreeSurfer
37983
34
Generalized PPI Toolbox
36206
35
BrainMap Database
33688
36
Multimodal Visual Consciousness Study Dataset
31898
37
Network-Based Statistic (NBS)
30902
38
QuickNII - Serial section aligner to volumetric atlases
30335
39
UNC 0-1-2 Infant Atlases
28819
40
Homer2
27789
41
Brain Biomechanics Imaging Resources
26328
42
NeuroDebian
26043
43
Anima
25789
44
NYU CSC TestRetest
25502
45
BrainVisa Morphologist extensions
25035
46
MIITRA atlas
24323
47
XNAT Extras
23245
48
NeuroImaging Analysis Kit (NIAK)
21450
49
Neuroimaging Made Easy Blog
20966
50
DWI/DTI Quality Control Tool: DTIPrep
20781
51
Melbourne Subcortex Atlas
20375
52
TumorSim
19696
53
CBS High-Res Brain Processing Tools
19500
54
Mango
19035
55
4D UNC Neonatal and Infant Cortical Surface Atlases
19011
56
Data Format Tools
18246
57
Surf Ice
18199
58
MITK Diffusion
18112
59
Automatic Registration Toolbox
18034
60
Vaa3D and Vaa3D-Neuron
17834
61
TEMPORAL LOBE EPILPSY MULTIPLE MODALITY DATA
17723
62
Fast Nonlocal Means for MRI denoising
17611
63
SRI24 Atlas: Normal Adult Brain Anatomy
17573
64
GRETNA
17303
65
BrainMask Volume Processing Tool
17220
66
Group ICA Toolbox (GIFT and EEGIFT)
16465
67
Talairach Daemon
16417
68
CANDI Neuroimaging Access Point
16410
69
Diffusion Toolkit / TrackVis
16081
70
SPHARM-PDM Toolbox
16078
71
3D Slicer
16033
72
Spatially Constrained Parcellation
15876
73
DCP：Diffusion Connectome Pipeline
15538
74
Freesurfer fsaverage
15351
75
Computational Morphometry Toolkit (CMTK)
15317
76
3DSlicerLupusLesionModule
15251
77
Subject Order-Independent Group ICA
15009
78
Chinese Adult Brain Atlas with Functional and White Matter Parcellation
14967
79
BrainSuite
14946
80
Graph Theory GLM (GTG) MATLAB Toolbox
14771
81
Awake Rat rsfMRI Database
14634
82
Human Imaging Database (HID)
14340
83
MRtrix
13877
84
Hammer And WML Modules for 3D Slicer
13855
85
Brainstorm
13830
86
FSL
13550
87
ENIGMA-DTI pipeline
13293
88
Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
13202
89
SVNTest
13162
90
dcm2nii
13150
91
libminc - Medical Image NetCDF library
12821
92
Artifact Detection Tools (ART)
12780
93
MARS (Multi-Atlas Robust Segmentation)
12496
94
BrainVISA
11747
95
NIfTI
11678
96
Task Independent Fluctuations Discussion
11528
97
GraphVar: A user-friendly toolbox for comprehensive graph analyses of functional brain connectivity
11499
98
Diffusional Kurtosis Estimator
11286
99
SPM for fNIRS toolbox
11233
100
2008 MICCAI MS Lesion Segmentation Challenge
11108